RLG00000007596

Phylloplanin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002452
Physical Location & Seq
Forward (+)
18816475 .. 18817413
939 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007596

Sequence Viewer

Length: 495 bp
ATGGCGCCCTCCAAAAAGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTTGCAGTAGTTGTTCCGATAGCTCAAGGGCAGCTGAACATTGGAAACCTCATCCCGTCTCTTCTTGGTCTCATCCGCATCCAAGGCACAGTCTTTTGCAGTGCCAATGGTCGTGCCACCGTTGGCACCATTCCTACCCCAGCATTTGCAAATGCTACGGTCCAACTACGTTGCGGAGCAGGAAACGGTACTGTGATTGCAACTGCGCAGACCAACTCCAACGGAGCGTTTTCAATCATGTTAGACCCTTCCTCCCTTACAGTACCTCAAATATTGTCCGGATGCCGTGCTGTGGTTACAACACCACTTGTCAGTTGCAACGCCACCCTCGCTTCAACCGGAACTCTCACGTCGACCTTGACATCACTTGGAAGCACCACCGCTGGCCCCTTGAGCATCTTCAATATCATTGCCGGCGGGTTCGGTCTCACCGTGCAAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

165

Amino Acids

16.36

Weight (kDa)

9.41

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 44 - 127 1.4e-06 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 258
AccB1I GGYRCC 2 cut(s) 4, 176
AccI GTMKAC 1 cut(s) 404
AccIII TCCGGA 1 cut(s) 329
AciI CCGC 4 cut(s) 127, 225, 432, 468
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 241, 315
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 285, 387, 454
AjiI CACGTC 1 cut(s) 402
AluBI AGCT 2 cut(s) 74, 85
AluI AGCT 2 cut(s) 74, 85
Alw26I GTCTC 3 cut(s) 114, 125, 482
Aor13HI TCCGGA 1 cut(s) 329
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 47, 82
AspLEI GCGC 2 cut(s) 7, 259
AspS9I GGNCC 2 cut(s) 211, 437
AsuHPI GGTGA 1 cut(s) 472
AvaII GGWCC 1 cut(s) 211
BanI GGYRCC 2 cut(s) 4, 176
BbvI GCAGC 2 cut(s) 34, 94
BceAI ACGGC 1 cut(s) 321
BcoDI GTCTC 3 cut(s) 114, 125, 482
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 48, 83
BlsI GCNGC 2 cut(s) 49, 84
Bme18I GGWCC 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 211, 437
BmiI GGNNCC 3 cut(s) 6, 178, 439
BmsI GCATC 3 cut(s) 138, 323, 456
BpuEI CTTGAG 2 cut(s) 60, 463
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 125, 482
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 2 cut(s) 329, 389
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 4 cut(s) 102, 123, 129, 338
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 459
BseXI GCAGC 2 cut(s) 34, 94
BseYI CCCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 438
BshNI GGYRCC 2 cut(s) 4, 176
BsiSI CCGG 3 cut(s) 330, 390, 465
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 3 cut(s) 114, 125, 482
BsmBI CGTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 438
Bso31I GGTCTC 2 cut(s) 125, 482
Bsp13I TCCGGA 1 cut(s) 329
BspACI CCGC 4 cut(s) 127, 225, 432, 468
BspANI GGCC 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 329
BspLI GGNNCC 3 cut(s) 6, 178, 439
BspMAI CTGCAG 1 cut(s) 52
BspT107I GGYRCC 2 cut(s) 4, 176
BspTNI GGTCTC 2 cut(s) 125, 482
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 7 cut(s) 142, 172, 211, 239, 244, 313, 484
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 436, 466
BstF5I GGATG 4 cut(s) 102, 123, 129, 338
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 259
BstMAI GTCTC 3 cut(s) 114, 125, 482
BstMWI GCNNNNNNNGC 4 cut(s) 53, 135, 380, 444
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 34, 94
BsuRI GGCC 1 cut(s) 438
BtrI CACGTC 1 cut(s) 402
BtsCI GGATG 4 cut(s) 102, 123, 129, 338
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 436, 466
CfoI GCGC 2 cut(s) 7, 259
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 211, 437
Csp6I GTAC 2 cut(s) 240, 314
CviAII CATG 1 cut(s) 289
CviJI RGCY 3 cut(s) 74, 85, 438
CviKI_1 RGCY 3 cut(s) 74, 85, 438
CviQI GTAC 2 cut(s) 240, 314
DinI GGCGCC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 133
Eco31I GGTCTC 2 cut(s) 125, 482
Eco47I GGWCC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 1 cut(s) 292
FaiI YATR 1 cut(s) 290
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 461
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 2 cut(s) 48, 83
FokI GGATG 4 cut(s) 89, 110, 116, 345
Fsp4HI GCNGC 2 cut(s) 48, 83
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 2 cut(s) 6, 258
GluI GCNGC 2 cut(s) 48, 83
GsaI CCCAGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 438
HapII CCGG 3 cut(s) 330, 390, 465
HhaI GCGC 2 cut(s) 7, 259
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 5, 257
HinP1I GCGC 2 cut(s) 5, 257
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HpaII CCGG 3 cut(s) 330, 390, 465
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 7 cut(s) 142, 172, 211, 239, 244, 313, 484
HpyCH4IV ACGT 3 cut(s) 220, 401, 491
HpyCH4V TGCA 7 cut(s) 50, 56, 150, 200, 251, 369, 487
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 135, 380, 444
HpySE526I ACGT 3 cut(s) 220, 401, 491
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 5, 257
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 329
KroI GCCGGC 1 cut(s) 464
KroNI GCCGGC 1 cut(s) 466
LmnI GCTCC 2 cut(s) 227, 275
LpnPI CCDG 6 cut(s) 204, 216, 343, 403, 420, 478
Lsp1109I GCAGC 2 cut(s) 34, 94
LweI GCATC 3 cut(s) 138, 323, 456
MaeII ACGT 3 cut(s) 220, 401, 491
MaeIII GTNAC 1 cut(s) 346
MboII GAAGA 2 cut(s) 104, 442
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 238, 294
MnlI CCTC 6 cut(s) 19, 47, 110, 313, 327, 389
MroI TCCGGA 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 464
MspA1I CMGCKG 2 cut(s) 85, 434
MspI CCGG 3 cut(s) 330, 390, 465
MwoI GCNNNNNNNGC 4 cut(s) 53, 135, 380, 444
NaeI GCCGGC 1 cut(s) 466
NarI GGCGCC 1 cut(s) 5
NgoMIV GCCGGC 1 cut(s) 464
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 3 cut(s) 6, 178, 439
NsbI TGCGCA 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 466
PkrI GCNGC 2 cut(s) 49, 84
PluTI GGCGCC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 6, 178, 439
PspPI GGNCC 2 cut(s) 211, 437
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 2 cut(s) 241, 315
RsaNI GTAC 2 cut(s) 240, 314
SalI GTCGAC 1 cut(s) 403
SatI GCNGC 2 cut(s) 48, 83
Sau96I GGNCC 2 cut(s) 211, 437
SetI ASST 8 cut(s) 76, 87, 102, 223, 319, 404, 410, 494
SfaNI GCATC 3 cut(s) 138, 323, 456
SfcI CTRYAG 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 211
SmlI CTYRAG 2 cut(s) 75, 442
SmoI CTYRAG 2 cut(s) 75, 442
SsiI CCGC 4 cut(s) 127, 225, 432, 468
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 324
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 7 cut(s) 142, 172, 211, 239, 244, 313, 484
TaiI ACGT 3 cut(s) 223, 404, 494
TaqI TCGA 1 cut(s) 404
TaqII GACCGA 1 cut(s) 464
TscAI CASTG 1 cut(s) 157
TseI GCWGC 2 cut(s) 47, 82
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.