Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

22305259 .. 22310548

Gene Structure 5290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18430.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGCTCTCCAAAAGGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGTAGCTGTTCCGATAGCTCAAGGGCAGACCATCGGAGGCCTCATCGCGACTCTCCTTGGTATCATTCGCGTCCAAGGCGTGGTCTATTGCAGTGTCAATGGCGCTGCCAGTGTTGGGACCAACGGCGCCATTCTTACCCCTCCATTTTCAAATGCTACAGTCCAACTACGTTGCGGAGCAGGAAGTGGTACTGTGTTAGAAACTGTGCAAACCAATGCCAAAGGAGAGTTCTCAATCTTGTTAGACATTTCCTTCTATACACTACCCCAAATATTGTCCGGATGCCGTGTTGTGGTTACAACACCACTTGCCAGTTGCAACGCCGCCCTCCCTTCCACTGGATGTCTTACATCGACCTTGACATCACTCGGAAACACCGTTGTTCCCCTCTTGACCACCGTCAATGTCGGTACCGGAGTGTTCAGTGTCTCCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

165

Amino Acids

16.46

Weight (kDa)

8.65

Isoelectric Point (pI)

20.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	2 cut(s)	182, 467
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	3 cut(s)	104, 126, 491
AccIII	TCCGGA	1 cut(s)	335
AciI	CCGC	3 cut(s)	231, 381, 489
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	247, 469
AfiI	CCNNNNNNNGG	4 cut(s)	136, 171, 349, 395
AgsI	TTSAA	1 cut(s)	207
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	2 cut(s)	62, 74
AluI	AGCT	2 cut(s)	62, 74
Alw26I	GTCTC	1 cut(s)	490
AlwNI	CAGNNNCTG	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	335
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	47, 161
Asp718I	GGTACC	1 cut(s)	467
AspLEI	GCGC	3 cut(s)	7, 161, 185
AspS9I	GGNCC	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	174
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BanI	GGYRCC	2 cut(s)	182, 467
BbvI	GCAGC	2 cut(s)	34, 148
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	196, 327
BcoDI	GTCTC	1 cut(s)	490
BfmI	CTRYAG	2 cut(s)	48, 213
BfoI	RGCGCY	3 cut(s)	8, 162, 186
BisI	GCNGC	3 cut(s)	48, 162, 381
BlsI	GCNGC	3 cut(s)	49, 163, 382
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	3 cut(s)	175, 184, 469
BmsI	GCATC	1 cut(s)	329
BoxI	GACNNNNGTC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	112, 130
BsaWI	WCCGGW	2 cut(s)	335, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 171, 349, 395
Bse1I	ACTGG	3 cut(s)	165, 369, 400
BseAI	TCCGGA	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	112, 130
BseGI	GGATG	2 cut(s)	344, 404
BseLI	CCNNNNNNNGG	4 cut(s)	136, 171, 349, 395
BseNI	ACTGG	3 cut(s)	165, 369, 400
BseXI	GCAGC	2 cut(s)	34, 148
Bsh1236I	CGCG	3 cut(s)	104, 126, 491
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	2 cut(s)	182, 467
BsiSI	CCGG	2 cut(s)	336, 471
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	136, 171, 349, 395
BsmAI	GTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	96
Bsp13I	TCCGGA	1 cut(s)	335
Bsp68I	TCGCGA	1 cut(s)	104
BspACI	CCGC	3 cut(s)	231, 381, 489
BspANI	GGCC	1 cut(s)	96
BspEI	TCCGGA	1 cut(s)	335
BspFNI	CGCG	3 cut(s)	104, 126, 491
BspLI	GGNNCC	3 cut(s)	175, 184, 469
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	182, 467
BsrI	ACTGG	3 cut(s)	165, 369, 400
BssECI	CCNNGG	2 cut(s)	112, 130
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	112, 130
Bst4CI	ACNGT	5 cut(s)	217, 250, 262, 436, 457
BstACI	GRCGYC	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	344, 404
BstFNI	CGCG	3 cut(s)	104, 126, 491
BstH2I	RGCGCY	3 cut(s)	8, 162, 186
BstHHI	GCGC	3 cut(s)	7, 161, 185
BstMAI	GTCTC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 132
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSFI	CTRYAG	2 cut(s)	48, 213
BstUI	CGCG	3 cut(s)	104, 126, 491
BstV1I	GCAGC	2 cut(s)	34, 148
BsuRI	GGCC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	344, 404
BtsI	GCAGTG	2 cut(s)	57, 154
BtsIMutI	CAGTG	5 cut(s)	57, 154, 172, 393, 487
BtuMI	TCGCGA	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	3 cut(s)	7, 161, 185
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	246, 468
CviJI	RGCY	3 cut(s)	62, 74, 96
CviKI_1	RGCY	3 cut(s)	62, 74, 96
CviQI	GTAC	2 cut(s)	246, 468
DinI	GGCGCC	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	112, 130
Eco147I	AGGCCT	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	112, 130
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	2 cut(s)	112, 130
FaiI	YATR	1 cut(s)	315
FaqI	GGGAC	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	48, 162, 381
FokI	GGATG	2 cut(s)	351, 411
Fsp4HI	GCNGC	3 cut(s)	48, 162, 381
GlaI	GCGC	3 cut(s)	6, 160, 184
GluI	GCNGC	3 cut(s)	48, 162, 381
HaeII	RGCGCY	3 cut(s)	8, 162, 186
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	2 cut(s)	336, 471
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	3 cut(s)	7, 161, 185
Hin1I	GRCGYC	1 cut(s)	183
Hin6I	GCGC	3 cut(s)	5, 159, 183
HinP1I	GCGC	3 cut(s)	5, 159, 183
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	2 cut(s)	336, 471
Hpy188I	TCNGA	3 cut(s)	69, 92, 428
Hpy188III	TCNNGA	3 cut(s)	103, 336, 448
HpyAV	CCTTC	2 cut(s)	319, 399
HpyCH4III	ACNGT	5 cut(s)	217, 250, 262, 436, 457
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	50, 147, 265, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 132
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	183
HspAI	GCGC	3 cut(s)	5, 159, 183
KasI	GGCGCC	1 cut(s)	182
Kpn2I	TCCGGA	1 cut(s)	335
KpnI	GGTACC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	6 cut(s)	178, 222, 349, 381, 382, 484
Lsp1109I	GCAGC	2 cut(s)	34, 148
LweI	GCATC	1 cut(s)	329
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	352
Mly113I	GGCGCC	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	47, 86, 107, 207, 395, 455
MroI	TCCGGA	1 cut(s)	335
MspI	CCGG	2 cut(s)	336, 471
MvnI	CGCG	3 cut(s)	104, 126, 491
MwoI	GCNNNNNNNGC	2 cut(s)	53, 132
NarI	GGCGCC	1 cut(s)	183
NlaIV	GGNNCC	3 cut(s)	175, 184, 469
NruI	TCGCGA	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	49, 163, 382
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	455
PspN4I	GGNNCC	3 cut(s)	175, 184, 469
PspPI	GGNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	62
RruI	TCGCGA	1 cut(s)	104
RsaI	GTAC	2 cut(s)	247, 469
RsaNI	GTAC	2 cut(s)	246, 468
SatI	GCNGC	3 cut(s)	48, 162, 381
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	100
SetI	ASST	4 cut(s)	64, 76, 229, 416
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	48, 213
SfoI	GGCGCC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	3 cut(s)	231, 381, 489
SspDI	GGCGCC	1 cut(s)	182
SspI	AATATT	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	96
StyI	CCWWGG	2 cut(s)	112, 130
TaaI	ACNGT	5 cut(s)	217, 250, 262, 436, 457
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	410
TauI	GCSGC	1 cut(s)	383
TscAI	CASTG	5 cut(s)	57, 154, 172, 400, 487
TseI	GCWGC	2 cut(s)	47, 161
TspRI	CASTG	5 cut(s)	57, 154, 172, 400, 487
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.