Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

10574790 .. 10576148

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G133700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCTTCAAAATAGTTCTCTTTGTGCCTCTCTTGGTTGCTGCCATGGCACTTCCACTAGCCGATGCCCAACTTGGGAATCTCCTGCCCCCTCTTCTCGGTCTGTTTCGGATACAAGGCACTGTATTTTGCACTGCCAATGGCTCTGTGAGTGTTGGTGGCAATGCTGCTACCCCAGTGTTCCCAAATGCCACTGTCCAACTGCAGTGTGGAGCTGGAAATGGGGTCTCGACTGTCACAGCCAATGCGTCAGGAGTGTTTTCAATCTTGTTGGATCCTTTACACTTTCTTCTCTCTTCACTTTTGACTGGTTGCAGGCTTGTTGTCACCACACCACTCGCCACCTGCAATGCTAGTTTGCCTCCGTCTGGAGTTCTCATATCGGCCTTGCAGTTCTTTGGAACCACCCTCGTCGGTGCCCTCAGCGTCATCAATGTCACCCCAGTCGGGTTCACCCTCCAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

156

Amino Acids

15.66

Weight (kDa)

7.69

Isoelectric Point (pI)

21.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	416
AclWI	GGATC	2 cut(s)	269, 282
AfiI	CCNNNNNNNGG	4 cut(s)	75, 98, 368, 447
AgsI	TTSAA	2 cut(s)	10, 264
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	269, 282
AoxI	GGCC	2 cut(s)	3, 384
ApeKI	GCWGC	2 cut(s)	41, 167
AsuHPI	GGTGA	3 cut(s)	319, 430, 445
BaeGI	GKGCMC	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	416
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	28, 154
BciVI	GTATCC	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	59, 354
BfmI	CTRYAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	42, 168
BlsI	GCNGC	2 cut(s)	43, 169
BmiI	GGNNCC	3 cut(s)	276, 403, 418
BmrI	ACTGGG	2 cut(s)	170, 437
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	2 cut(s)	170, 437
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 98, 368, 447
Bse1I	ACTGG	3 cut(s)	176, 313, 443
Bse3DI	GCAATG	2 cut(s)	169, 355
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	4 cut(s)	75, 98, 368, 447
BseMI	GCAATG	2 cut(s)	169, 355
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	3 cut(s)	176, 313, 443
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	28, 154
BshFI	GGCC	2 cut(s)	5, 386
BshNI	GGYRCC	1 cut(s)	416
BslI	CCNNNNNNNGG	4 cut(s)	75, 98, 368, 447
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	5, 386
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	5, 386
BspCNI	CTCAG	1 cut(s)	435
BspLI	GGNNCC	3 cut(s)	276, 403, 418
BspMAI	CTGCAG	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	269, 282
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	169, 355
BsrI	ACTGG	3 cut(s)	176, 313, 443
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	124, 196, 235
Bst6I	CTCTTC	2 cut(s)	99, 301
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	28, 154
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	5, 386
BtgI	CCRYGG	1 cut(s)	45
BtsI	GCAGTG	2 cut(s)	132, 212
BtsIMutI	CAGTG	5 cut(s)	120, 132, 183, 192, 212
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	317
CseI	GACGC	2 cut(s)	237, 415
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	5, 62, 144, 215, 242, 319, 386
CviKI_1	RGCY	7 cut(s)	5, 62, 144, 215, 242, 319, 386
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	99, 301
EarI	CTCTTC	2 cut(s)	99, 301
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 380
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	42, 168
Fsp4HI	GCNGC	2 cut(s)	42, 168
FspBI	CTAG	2 cut(s)	59, 354
GluI	GCNGC	2 cut(s)	42, 168
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	5, 386
HgaI	GACGC	2 cut(s)	237, 415
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	3 cut(s)	319, 430, 445
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	229, 252, 369
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	3 cut(s)	124, 196, 235
HpyCH4V	TGCA	5 cut(s)	132, 205, 315, 348, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	9 cut(s)	98, 189, 201, 237, 294, 301, 354, 358, 456
Lsp1109I	GCAGC	2 cut(s)	28, 154
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	59, 354
MaeIII	GTNAC	3 cut(s)	235, 325, 436
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	86, 281, 288
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	223, 252
MnlI	CCTC	6 cut(s)	39, 102, 372, 419, 431, 467
MwoI	GCNNNNNNNGC	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	276, 403, 418
NmuCI	GTSAC	3 cut(s)	235, 325, 436
PaqCI	CACCTGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	43, 169
PspN4I	GGNNCC	3 cut(s)	276, 403, 418
PstI	CTGCAG	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	274
SatI	GCNGC	2 cut(s)	42, 168
Sau3AI	GATC	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	2 cut(s)	217, 347
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	203
SspMI	CTAG	2 cut(s)	59, 354
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	124, 196, 235
TaqI	TCGA	1 cut(s)	230
TaqII	GACCGA	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	5 cut(s)	127, 139, 183, 199, 212
TseFI	GTSAC	3 cut(s)	235, 325, 436
TseI	GCWGC	2 cut(s)	41, 167
Tsp45I	GTSAC	3 cut(s)	235, 325, 436
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	5 cut(s)	127, 139, 183, 199, 212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XspI	CTAG	2 cut(s)	59, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.