Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Reverse (-)

46401236 .. 46402451

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCTCCTTCAAAACACTTGTCTTTGTGCCGCTCTTGGTTATTGCTGCACTGGCAGTAGTTCCAATCGCAAAAGCCCAACTTGGCGGTCTTCTTGGGCTAATCCGCATACAAGGGACTCTGTTTTGTACGGCCAATGGCCGTGTCAGTAATGCTGGCGCCTCCCTTACACCAGTATTCCCAAATGCTACAGTCCAATTGCAATGTGGATCAGGAAATGTGGTATCTACCGCTATTACGGATACCTCGGGACTCTTTTCAATCGTGCTAGATCCTCTCCAGTTTCTTCTGTCTTCACTATTGTCTAATTGCAAGCTCGTTGTTAGCACACCACTCTCCAGCTGCAACTCTAGTTTGTCTGGAACCACGATACTCCAATCTACCTTGCAGCTCATTGGAACAACCCTCGCGGGCCTCCTCAGCATCATCAATCTCATTCCAGCCGGCTTCAGCCCCATCATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

155

Amino Acids

15.77

Weight (kDa)

8.91

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	410
AciI	CCGC	5 cut(s)	32, 87, 106, 231, 410
AclWI	GGATC	2 cut(s)	217, 266
AcoI	YGGCCR	2 cut(s)	132, 139
AcuI	CTGAAG	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	13, 261
AluBI	AGCT	3 cut(s)	316, 342, 391
AluI	AGCT	3 cut(s)	316, 342, 391
AlwI	GGATC	2 cut(s)	217, 266
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	4 cut(s)	3, 132, 139, 412
ApeKI	GCWGC	3 cut(s)	47, 342, 388
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	83, 285
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	3 cut(s)	34, 329, 400
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	2 cut(s)	126, 147
BciVI	GTATCC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	269, 351
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	32, 48, 343, 389
BlsI	GCNGC	4 cut(s)	33, 49, 344, 390
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	160, 364
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	2 cut(s)	83, 285
BpmI	CTGGAG	2 cut(s)	263, 322
Bpu10I	CCTNAGC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	57, 173, 280
Bse3DI	GCAATG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	433
BseNI	ACTGG	3 cut(s)	57, 173, 280
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	34, 329, 400
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	4 cut(s)	5, 134, 141, 414
BshNI	GGYRCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	130, 264
BsmFI	GGGAC	2 cut(s)	130, 264
BsnI	GGCC	4 cut(s)	5, 134, 141, 414
BsoBI	CYCGRG	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	209, 271
BspACI	CCGC	5 cut(s)	32, 87, 106, 231, 410
BspANI	GGCC	4 cut(s)	5, 134, 141, 414
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	2 cut(s)	160, 364
BspPI	GGATC	2 cut(s)	217, 266
BspT107I	GGYRCC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	57, 173, 280
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	209, 271
BssNI	GRCGYC	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	4 cut(s)	157, 314, 412, 445
BstDEI	CTNAG	1 cut(s)	419
BstFNI	CGCG	1 cut(s)	410
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	212, 274
BstMBI	GATC	2 cut(s)	209, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 420
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	3 cut(s)	34, 329, 400
BstV2I	GAAGAC	2 cut(s)	83, 285
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	4 cut(s)	5, 134, 141, 414
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	157, 314, 412, 445
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	129
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	419
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	2 cut(s)	211, 273
DpnII	GATC	2 cut(s)	209, 271
EaeI	YGGCCR	2 cut(s)	132, 139
Eco57I	CTGAAG	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	247
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
FaiI	YATR	1 cut(s)	110
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	2 cut(s)	130, 264
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	32, 48, 343, 389
Fsp4HI	GCNGC	4 cut(s)	32, 48, 343, 389
FspBI	CTAG	2 cut(s)	269, 351
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	32, 48, 343, 389
GsuI	CTGGAG	2 cut(s)	263, 322
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	5, 134, 141, 414
HapII	CCGG	1 cut(s)	444
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	118, 252
HpaII	CCGG	1 cut(s)	444
Hpy188III	TCNNGA	3 cut(s)	213, 249, 360
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	5 cut(s)	50, 202, 312, 345, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 420
HpyF3I	CTNAG	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	1 cut(s)	159
KasI	GGCGCC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	209, 271
LpnPI	CCDG	9 cut(s)	38, 141, 186, 198, 293, 345, 352, 453, 457
Lsp1109I	GCAGC	3 cut(s)	34, 329, 400
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	2 cut(s)	269, 351
MalI	GATC	2 cut(s)	211, 273
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	2 cut(s)	209, 271
MboII	GAAGA	3 cut(s)	83, 278, 285
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	3 cut(s)	197, 307, 463
Mly113I	GGCGCC	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	112, 246
MnlI	CCTC	7 cut(s)	16, 172, 256, 285, 416, 425, 428
MroNI	GCCGGC	1 cut(s)	443
MseI	TTAA	2 cut(s)	462, 466
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	444
MunI	CAATTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	53, 420
NaeI	GCCGGC	1 cut(s)	445
NarI	GGCGCC	1 cut(s)	159
NdeII	GATC	2 cut(s)	209, 271
NgoMIV	GCCGGC	1 cut(s)	443
NlaIV	GGNNCC	2 cut(s)	160, 364
PacI	TTAATTAA	1 cut(s)	466
PdiI	GCCGGC	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	33, 49, 344, 390
PleI	GAGTC	2 cut(s)	112, 246
PluTI	GGCGCC	1 cut(s)	162
PpsI	GAGTC	2 cut(s)	112, 246
PshBI	ATTAAT	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	160, 364
PspPI	GGNCC	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	342
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	462, 466
SatI	GCNGC	4 cut(s)	32, 48, 343, 389
Sau3AI	GATC	2 cut(s)	209, 271
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	2 cut(s)	112, 246
SetI	ASST	5 cut(s)	248, 318, 344, 386, 393
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	160
Sse9I	AATT	3 cut(s)	197, 307, 463
SsiI	CCGC	5 cut(s)	32, 87, 106, 231, 410
SspDI	GGCGCC	1 cut(s)	158
SspMI	CTAG	2 cut(s)	269, 351
TaaI	ACNGT	1 cut(s)	193
TasI	AATT	3 cut(s)	197, 307, 463
TauI	GCSGC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	462, 466
Tru9I	TTAA	2 cut(s)	462, 466
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	3 cut(s)	47, 342, 388
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	2 cut(s)	269, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.