Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Reverse (-)

31852083 .. 31857680

Gene Structure 5598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2628 bp

ATGTCTTTCTTTCCCTCCAATTCCCAAATCCAAACCGAACACTCAATTTCACGCTTCCAGGCCGCCGTCCTCGTCGGTGCTCCCTCCTACCCCAACGCCATTGCCTGGTCCGACGAGAACCTCATCGCCGTCGCCTCCGGCCACCTCGTCACCATTCTGAATCCGGCGACACTGCCTTTCGGACCAAGAGGTCTCATCACTATCCAAAACGGACCTCCCTTTCCAATTGGTGTCATAGATAGTCAAGATTTGTTCTCTGATTGCTTGCTGCCTACGATTATATCAAGGGACCATGAACCCTGTGTTCGATCAATTTCGTGGTCTCCGGTTGGGCTTGCTCCGAATGCTGGCTGCTTGCTGGCTGTCTGCACAACCCAAGGACTTGTCAAGCTTTACCGCCCGCCGTATTGTGATTTCTGTGCCGAATGGATAGAGGTTGCGGATTTATCAGCCAAGCTTTATGATTATCTTGCGAGTATTAGTTTCGGGGAGGTACCAGATGGTTCTTTGGTACGGTGTGATAACCGTGAGATAGAGCAGGGTGTACAATCTGTCCCTACAAAGGAGGGTAAGCGACGAAAAGCACACATATCTGGCAAAAGCTCTAGTAACCCTTATTCCAAACGCTATGGACAAGAAGTGCATACGGAGCTTGACAGTGACTCCGACCAGATGGAAGAAAGGAGTTCAAATCAGATTGTTCCATCATCAAAATCTAAAGTAACATCTGTCAAGAAGATACAAGAAAACTCTACCCTCCCTCAAATAACTGTGGATCAATATGCTACTCGTAGTGCAATGCTATCATCACTTGTAGTTGCCTGGTCACCGATACTGCAATCACGTGCCAAAATCAGTTCAAGTCCTCAACATGGTTCATCCCTGTCTTTACTTGCAGTCGGAGGGAAGTCGGGTCAAGTTTCTGTATGGAGAGTTTCTGTACCAGAGTGTTATTCTGTTGACCAAAGCAGGGATCCAACTACGCTGATGCTCATTCAAATCATTCAGGCACACAATTCATGGATCACAGCAATTAGTTGGGCTTTGCTTGATTCTGATTCGTCAAATCCTCAATTTCTATTGGCTACAGCAAGTTATAATGGAAGTGTGAAGATCTGGCTGGCATATTATGAACAATTGCTAAAGTCATCGGAACCTAATACCACTTCCTTTTCCTTGTTAAAGGAGGTTGGAACTGTTGATATGGTTCCAGTTTCAGCGCTTTCAGTTACTGTGCCTGCTCAGTGTCCACAGACAATGCACTTGGCAGTTGGCAAAGGTTCTGGCTTTTGTGAAGTGTGGATATGCAACATCTCTGGCCAAAAATTTCATAAAATTAGTCCACATGATGGGCATTCCCAGATTGTTACAGGTTTAGCTTGGGCTTTTGATGGGAAAATTTTGTACAGCAGCAGTCAGGATAATTTTGTACGTGGTTGGATTCTAAATGGAAGTTCCCTGTGTGAAGTACCTATTCCTTCAAATACTCCTGGTCTGAGAAGCTCAACTGATCTTCCAGATGGATTTGTTTCTTGCTTTGGTGTGGCAGTGTCCCCTGGAAATGTTGCAATTGCGTGGGTTCGTAATACTGATGTTGATCAATTAAATCCAATGTATGAGGCAAGGACTCAAAAGGCCATTGTAGAGTTTTTCTGGATCGGGGGCCAGCAAGTTCATGTTTTGTCAAACAATTTCCTGGATCGTGATACTGAAGCTATTCCTGGCTCTTCTGAGAAGGAATTGGTTGATTGGGAAACCAATATTATATGGTCTTTAAAGCAGTTTGAAACTCAGGATAAGCCTCTTGTTGTTTGGGATATTGCTACAGCATTATTGGCATTTAGGCGTTCTAAACCAGAGTATGTAGACTGCGTAGTGATTAAGTGGCTCTCTGTTTCCTCTCTGGGATCTGAGTTGAACTCTTCTGCTGAAAATGTTCTGTTGTATGCCTCCCGAAATTTTTCAAAAGTCACTTCTCGCCAACTACACCTTCTCAATATAATCTGTAGACGCGTGATACTATCGGAGATGAAGGCTGATGAGATAAACAACAAACTTCTGAACATGGAAGGAGTGGATGGTGCTGAAGAAGAGCAACTGACTTTGTGGATCAAGCTGCTTTTGAACAGTGAAAGAGAACTCCGTGAGAGGCTTGTGGGGTTTACATTTTCTTCTTTCAAAAGTCGAATGCTTGCTTCAGCCACAAATTCTCAATCTAGAGATTGGTTTCCTGTTGGACTGACACAAATGGAGCAGTGGGTTGAGCTTAACCAAGATCATGTGCAGGATCAACTGAGGGTCCTTGCAGCAGAAGTTAGGAAGCATGAGCAGAGGCTCCAATTGAGTAATTCCATAGCAGCAGAGAAGTGTAGCTATTGTTCAGCATCAGTTCCATTCGAATCTCTAGAAGTTGCCTTCTGCAGTAAAGGACACAAACTAGCAAGGTGTGCCGTTTCTATGGTGGTTTGTCCTACCACTCCCATATGGTTTTGCATGTGTTGTCATAGACGAGCTCTCAAAATGGCGCCAGAGACTCTATTTGCAATCCCTGGTCCACAGTGTCCCTTCTGCGGGATACTGCTGCAGAGACTACAACCGGATTTTCTACTTTCTGCATCACCGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

875

Amino Acids

96.56

Weight (kDa)

5.92

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIIC_delta	PF12657	36 - 525	5.2e-20	Transcription factor IIIC subunit delta bet-propeller domain
zf-TFIIIC	PF12660	785 - 841	1.3e-10	Putative zinc-finger of transcription factor IIIC complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1098
AasI	GACNNNNNNGTC	1 cut(s)	189
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	2 cut(s)	493, 2524
AccB7I	CCANNNNNTGG	2 cut(s)	105, 1349
AccI	GTMKAC	2 cut(s)	1866, 2008
AccII	CGCG	1 cut(s)	2013
AciI	CCGC	5 cut(s)	63, 397, 401, 440, 2571
AclWI	GGATC	9 cut(s)	783, 968, 981, 1031, 1664, 1707, 1915, 2117, 2295
AcoI	YGGCCR	2 cut(s)	139, 1318
AcsI	RAATTY	4 cut(s)	1325, 1398, 1957, 2206
AcuI	CTGAAG	3 cut(s)	1731, 2106, 2181
AcvI	CACGTG	1 cut(s)	845
AcyI	GRCGYC	1 cut(s)	2525
AfaI	GTAC	7 cut(s)	495, 513, 546, 942, 1406, 1431, 1470
AfeI	AGCGCT	1 cut(s)	1221
AfiI	CCNNNNNNNGG	8 cut(s)	105, 347, 562, 872, 970, 1349, 2570, 2571
AflIII	ACRYGT	1 cut(s)	2011
AgsI	TTSAA	9 cut(s)	690, 861, 998, 1482, 1787, 1918, 1965, 2125, 2179
AjnI	CCWGG	8 cut(s)	57, 104, 821, 1489, 1555, 1695, 1720, 2548
AjuI	GAANNNNNNNTTGG	2 cut(s)	1974, 2006
Alw21I	GWGCWC	2 cut(s)	82, 2515
Alw26I	GTCTC	4 cut(s)	197, 327, 2525, 2581
AlwI	GGATC	9 cut(s)	783, 968, 981, 1031, 1664, 1707, 1915, 2117, 2295
AlwNI	CAGNNNCTG	1 cut(s)	1232
Aor51HI	AGCGCT	1 cut(s)	1221
AoxI	GGCC	5 cut(s)	60, 139, 1318, 1635, 1663
ApeKI	GCWGC	7 cut(s)	268, 351, 1410, 2116, 2306, 2357, 2581
ApoI	RAATTY	4 cut(s)	1325, 1398, 1957, 2206
Asp700I	GAANNNNTTC	3 cut(s)	1716, 1935, 1960
Asp718I	GGTACC	1 cut(s)	493
AspLEI	GCGC	2 cut(s)	1222, 2527
AspS9I	GGNCC	7 cut(s)	108, 182, 212, 289, 1663, 2299, 2552
AsuHPI	GGTGA	3 cut(s)	142, 819, 2610
AsuII	TTCGAA	1 cut(s)	2397
AvaII	GGWCC	6 cut(s)	108, 182, 212, 289, 2299, 2552
BalI	TGGCCA	1 cut(s)	1320
BamHI	GGATCC	1 cut(s)	973
BanI	GGYRCC	2 cut(s)	493, 2524
BanII	GRGCYC	1 cut(s)	2515
BbrPI	CACGTG	1 cut(s)	845
Bbv12I	GWGCWC	2 cut(s)	82, 2515
BbvI	GCAGC	7 cut(s)	255, 338, 1422, 2103, 2318, 2369, 2568
BccI	CCATC	7 cut(s)	494, 667, 712, 1343, 1385, 1514, 2072
BceAI	ACGGC	4 cut(s)	50, 113, 388, 2435
BciT130I	CCWGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
BciVI	GTATCC	1 cut(s)	2568
BclI	TGATCA	1 cut(s)	1597
BcoDI	GTCTC	4 cut(s)	197, 327, 2525, 2581
BfaI	CTAG	4 cut(s)	606, 2217, 2405, 2438
BfmI	CTRYAG	5 cut(s)	1086, 1824, 2005, 2419, 2582
BfoI	RGCGCY	2 cut(s)	1223, 2528
BfuI	GTATCC	1 cut(s)	2568
BglII	AGATCT	1 cut(s)	1113
BisI	GCNGC	8 cut(s)	63, 269, 352, 1411, 2117, 2307, 2358, 2582
BlsI	GCNGC	8 cut(s)	64, 270, 353, 1412, 2118, 2308, 2359, 2583
Bme1390I	CCNGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
Bme18I	GGWCC	6 cut(s)	108, 182, 212, 289, 2299, 2552
BmgT120I	GGNCC	7 cut(s)	108, 182, 212, 289, 1663, 2299, 2552
BmiI	GGNNCC	9 cut(s)	290, 495, 975, 1155, 1209, 1664, 2300, 2336, 2526
BmrFI	CCNGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
BmsI	GCATC	3 cut(s)	978, 2393, 2624
BplI	GAGNNNNNCTC	2 cut(s)	1904, 1936
Bpu14I	TTCGAA	1 cut(s)	2397
BsaAI	YACGTR	2 cut(s)	845, 1433
BsaBI	GATNNNNATC	1 cut(s)	1596
BsaHI	GRCGYC	1 cut(s)	2525
BsaI	GGTCTC	2 cut(s)	197, 327
BsaJI	CCNNGG	3 cut(s)	376, 1555, 2548
BsaWI	WCCGGW	2 cut(s)	325, 2596
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	8 cut(s)	105, 347, 562, 872, 970, 1349, 2570, 2571
Bse1I	ACTGG	1 cut(s)	1211
Bse3DI	GCAATG	2 cut(s)	99, 804
Bse8I	GATNNNNATC	1 cut(s)	1596
BseBI	CCWGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
BseDI	CCNNGG	3 cut(s)	376, 1555, 2548
BseGI	GGATG	2 cut(s)	878, 2083
BseJI	GATNNNNATC	1 cut(s)	1596
BseLI	CCNNNNNNNGG	8 cut(s)	105, 347, 562, 872, 970, 1349, 2570, 2571
BseMI	GCAATG	2 cut(s)	99, 804
BseMII	CTCAG	6 cut(s)	1256, 1487, 1722, 1805, 1902, 2285
BseNI	ACTGG	1 cut(s)	1211
BseXI	GCAGC	7 cut(s)	255, 338, 1422, 2103, 2318, 2369, 2568
BsgI	GTGCAG	2 cut(s)	352, 2303
Bsh1236I	CGCG	1 cut(s)	2013
BshFI	GGCC	5 cut(s)	62, 141, 1320, 1637, 1665
BshNI	GGYRCC	2 cut(s)	493, 2524
BsiHKAI	GWGCWC	2 cut(s)	82, 2515
BsiSI	CCGG	4 cut(s)	138, 164, 326, 2597
BslFI	GGGAC	4 cut(s)	302, 539, 1537, 2547
BslI	CCNNNNNNNGG	8 cut(s)	105, 347, 562, 872, 970, 1349, 2570, 2571
BsmAI	GTCTC	4 cut(s)	197, 327, 2525, 2581
BsmFI	GGGAC	4 cut(s)	302, 539, 1537, 2547
BsmI	GAATGC	3 cut(s)	349, 1354, 2193
BsnI	GGCC	5 cut(s)	62, 141, 1320, 1637, 1665
Bso31I	GGTCTC	2 cut(s)	197, 327
Bsp119I	TTCGAA	1 cut(s)	2397
Bsp1286I	GDGCHC	2 cut(s)	82, 2515
Bsp1407I	TGTACA	2 cut(s)	544, 1404
BspACI	CCGC	5 cut(s)	63, 397, 401, 440, 2571
BspANI	GGCC	5 cut(s)	62, 141, 1320, 1637, 1665
BspCNI	CTCAG	6 cut(s)	1255, 1488, 1723, 1804, 1903, 2286
BspFNI	CGCG	1 cut(s)	2013
BspLI	GGNNCC	9 cut(s)	290, 495, 975, 1155, 1209, 1664, 2300, 2336, 2526
BspMAI	CTGCAG	2 cut(s)	2423, 2586
BspPI	GGATC	9 cut(s)	783, 968, 981, 1031, 1664, 1707, 1915, 2117, 2295
BspQI	GCTCTTC	2 cut(s)	1732, 2085
BspT104I	TTCGAA	1 cut(s)	2397
BspT107I	GGYRCC	2 cut(s)	493, 2524
BspTNI	GGTCTC	2 cut(s)	197, 327
BsrDI	GCAATG	2 cut(s)	99, 804
BsrGI	TGTACA	2 cut(s)	544, 1404
BsrI	ACTGG	1 cut(s)	1211
BssECI	CCNNGG	3 cut(s)	376, 1555, 2548
BssNI	GRCGYC	1 cut(s)	2525
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
Bst4CI	ACNGT	8 cut(s)	516, 527, 659, 772, 1198, 1234, 2129, 2559
Bst6I	CTCTTC	3 cut(s)	1732, 1927, 2085
BstACI	GRCGYC	1 cut(s)	2525
BstAPI	GCANNNNNTGC	1 cut(s)	2447
BstAUI	TGTACA	2 cut(s)	544, 1404
BstBAI	YACGTR	2 cut(s)	845, 1433
BstBI	TTCGAA	1 cut(s)	2397
BstDEI	CTNAG	6 cut(s)	1242, 1496, 1731, 1791, 1911, 2294
BstEII	GGTNACC	1 cut(s)	825
BstF5I	GGATG	2 cut(s)	878, 2083
BstFNI	CGCG	1 cut(s)	2013
BstH2I	RGCGCY	2 cut(s)	1223, 2528
BstHHI	GCGC	2 cut(s)	1222, 2527
BstMAI	GTCTC	4 cut(s)	197, 327, 2525, 2581
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 649, 1835, 2447
BstNI	CCWGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
BstNSI	RCATGY	1 cut(s)	2497
BstPI	GGTNACC	1 cut(s)	825
BstSCI	CCNGG	8 cut(s)	57, 104, 821, 1489, 1555, 1695, 1720, 2548
BstSFI	CTRYAG	5 cut(s)	1086, 1824, 2005, 2419, 2582
BstUI	CGCG	1 cut(s)	2013
BstV1I	GCAGC	7 cut(s)	255, 338, 1422, 2103, 2318, 2369, 2568
BstX2I	RGATCY	3 cut(s)	973, 1113, 1907
BstYI	RGATCY	3 cut(s)	973, 1113, 1907
BsuI	GTATCC	1 cut(s)	2568
BsuRI	GGCC	5 cut(s)	62, 141, 1320, 1637, 1665
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	878, 2083
BtsI	GCAGTG	3 cut(s)	170, 1554, 2261
BtsIMutI	CAGTG	7 cut(s)	170, 664, 1250, 1554, 2134, 2261, 2564
CaiI	CAGNNNCTG	1 cut(s)	1232
CfoI	GCGC	2 cut(s)	1222, 2527
Cfr13I	GGNCC	7 cut(s)	108, 182, 212, 289, 1663, 2299, 2552
CseI	GACGC	1 cut(s)	2019
Csp6I	GTAC	7 cut(s)	494, 512, 545, 941, 1405, 1430, 1469
CviAII	CATG	9 cut(s)	293, 872, 1020, 1346, 1676, 2065, 2279, 2324, 2494
CviQI	GTAC	7 cut(s)	494, 512, 545, 941, 1405, 1430, 1469
DdeI	CTNAG	6 cut(s)	1242, 1496, 1731, 1791, 1911, 2294
DinI	GGCGCC	1 cut(s)	2526
DraI	TTTAAA	1 cut(s)	1776
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
EaeI	YGGCCR	2 cut(s)	139, 1318
Eam1104I	CTCTTC	3 cut(s)	1732, 1927, 2085
EarI	CTCTTC	3 cut(s)	1732, 1927, 2085
Ecl136II	GAGCTC	1 cut(s)	2513
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	2515
Eco31I	GGTCTC	2 cut(s)	197, 327
Eco47I	GGWCC	6 cut(s)	108, 182, 212, 289, 2299, 2552
Eco47III	AGCGCT	1 cut(s)	1221
Eco53kI	GAGCTC	1 cut(s)	2513
Eco57I	CTGAAG	3 cut(s)	1731, 2106, 2181
Eco72I	CACGTG	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	2513
EcoO109I	RGGNCCY	1 cut(s)	2299
EcoO65I	GGTNACC	1 cut(s)	825
EcoRII	CCWGG	8 cut(s)	57, 104, 821, 1489, 1555, 1695, 1720, 2548
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	2515
EgeI	GGCGCC	1 cut(s)	2526
EheI	GGCGCC	1 cut(s)	2526
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	9 cut(s)	296, 875, 1023, 1349, 1679, 2068, 2282, 2327, 2497
FaqI	GGGAC	4 cut(s)	302, 539, 1537, 2547
FatI	CATG	9 cut(s)	292, 871, 1019, 1345, 1675, 2064, 2278, 2323, 2493
FauI	CCCGC	2 cut(s)	408, 2564
FauNDI	CATATG	1 cut(s)	2483
FbaI	TGATCA	1 cut(s)	1597
FblI	GTMKAC	2 cut(s)	1866, 2008
Fnu4HI	GCNGC	8 cut(s)	63, 269, 352, 1411, 2117, 2307, 2358, 2582
FokI	GGATG	2 cut(s)	865, 2090
FriOI	GRGCYC	1 cut(s)	2515
Fsp4HI	GCNGC	8 cut(s)	63, 269, 352, 1411, 2117, 2307, 2358, 2582
FspBI	CTAG	4 cut(s)	606, 2217, 2405, 2438
GlaI	GCGC	2 cut(s)	1221, 2526
GluI	GCNGC	8 cut(s)	63, 269, 352, 1411, 2117, 2307, 2358, 2582
HaeII	RGCGCY	2 cut(s)	1223, 2528
HaeIII	GGCC	5 cut(s)	62, 141, 1320, 1637, 1665
HapII	CCGG	4 cut(s)	138, 164, 326, 2597
HgaI	GACGC	1 cut(s)	2019
HhaI	GCGC	2 cut(s)	1222, 2527
Hin1I	GRCGYC	1 cut(s)	2525
Hin1II	CATG	9 cut(s)	296, 875, 1023, 1349, 1679, 2068, 2282, 2327, 2497
Hin6I	GCGC	2 cut(s)	1220, 2525
HinP1I	GCGC	2 cut(s)	1220, 2525
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	2 cut(s)	389, 455
HinfI	GANTC	8 cut(s)	160, 662, 1052, 1058, 1441, 1627, 2399, 2533
HpaII	CCGG	4 cut(s)	138, 164, 326, 2597
HphI	GGTGA	3 cut(s)	142, 819, 2610
Hpy166II	GTNNAC	8 cut(s)	545, 961, 1250, 1343, 1867, 2009, 2163, 2555
Hpy8I	GTNNAC	8 cut(s)	545, 961, 1250, 1343, 1867, 2009, 2163, 2555
Hpy99I	CGWCG	4 cut(s)	77, 116, 134, 579
HpyAV	CCTTC	7 cut(s)	1488, 1729, 2000, 2026, 2063, 2425, 2575
HpyCH4III	ACNGT	8 cut(s)	516, 527, 659, 772, 1198, 1234, 2129, 2559
HpyCH4IV	ACGT	2 cut(s)	844, 1432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 649, 1835, 2447
HpyF3I	CTNAG	6 cut(s)	1242, 1496, 1731, 1791, 1911, 2294
HpySE526I	ACGT	2 cut(s)	844, 1432
Hsp92I	GRCGYC	1 cut(s)	2525
Hsp92II	CATG	9 cut(s)	296, 875, 1023, 1349, 1679, 2068, 2282, 2327, 2497
HspAI	GCGC	2 cut(s)	1220, 2525
KasI	GGCGCC	1 cut(s)	2524
KpnI	GGTACC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	1597
LguI	GCTCTTC	2 cut(s)	1732, 2085
LmnI	GCTCC	5 cut(s)	85, 343, 649, 2251, 2340
Lsp1109I	GCAGC	7 cut(s)	255, 338, 1422, 2103, 2318, 2369, 2568
LweI	GCATC	3 cut(s)	978, 2393, 2624
MaeI	CTAG	4 cut(s)	606, 2217, 2405, 2438
MaeII	ACGT	2 cut(s)	844, 1432
MaeIII	GTNAC	8 cut(s)	148, 608, 659, 721, 825, 1228, 1366, 1969
MboII	GAAGA	9 cut(s)	689, 748, 1123, 1505, 1719, 1914, 2099, 2102, 2163
MfeI	CAATTG	4 cut(s)	225, 1136, 1569, 2339
MflI	RGATCY	3 cut(s)	973, 1113, 1907
MhlI	GDGCHC	2 cut(s)	82, 2515
MlsI	TGGCCA	1 cut(s)	1320
MluI	ACGCGT	1 cut(s)	2011
MluNI	TGGCCA	1 cut(s)	1320
Mly113I	GGCGCC	1 cut(s)	2525
MlyI	GAGTC	3 cut(s)	656, 1621, 2527
MmeI	TCCRAC	7 cut(s)	135, 690, 880, 1001, 1171, 1418, 2215
Mox20I	TGGCCA	1 cut(s)	1320
MroXI	GAANNNNTTC	3 cut(s)	1716, 1935, 1960
MscI	TGGCCA	1 cut(s)	1320
MseI	TTAA	6 cut(s)	1181, 1604, 1775, 1881, 2268, 2626
Msp20I	TGGCCA	1 cut(s)	1320
MspI	CCGG	4 cut(s)	138, 164, 326, 2597
MspR9I	CCNGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
MunI	CAATTG	4 cut(s)	225, 1136, 1569, 2339
Mva1269I	GAATGC	3 cut(s)	349, 1354, 2193
MvaI	CCWGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
MvnI	CGCG	1 cut(s)	2013
MwoI	GCNNNNNNNGC	4 cut(s)	344, 649, 1835, 2447
NarI	GGCGCC	1 cut(s)	2525
NdeI	CATATG	1 cut(s)	2483
NlaIII	CATG	9 cut(s)	296, 875, 1023, 1349, 1679, 2068, 2282, 2327, 2497
NlaIV	GGNNCC	9 cut(s)	290, 495, 975, 1155, 1209, 1664, 2300, 2336, 2526
NmuCI	GTSAC	4 cut(s)	148, 659, 825, 1969
NspI	RCATGY	1 cut(s)	2497
NspV	TTCGAA	1 cut(s)	2397
PciSI	GCTCTTC	2 cut(s)	1732, 2085
PctI	GAATGC	3 cut(s)	349, 1354, 2193
PdmI	GAANNNNTTC	3 cut(s)	1716, 1935, 1960
PfeI	GAWTC	5 cut(s)	160, 1052, 1058, 1441, 2399
PflMI	CCANNNNNTGG	2 cut(s)	105, 1349
PfoI	TCCNGGA	1 cut(s)	1695
PkrI	GCNGC	8 cut(s)	64, 270, 353, 1412, 2118, 2308, 2359, 2583
PleI	GAGTC	3 cut(s)	656, 1621, 2527
PluTI	GGCGCC	1 cut(s)	2528
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
PpsI	GAGTC	3 cut(s)	656, 1621, 2527
Ppu21I	YACGTR	2 cut(s)	845, 1433
PpuMI	RGGWCCY	1 cut(s)	2299
PsiI	TTATAA	1 cut(s)	1098
Psp124BI	GAGCTC	1 cut(s)	2515
Psp5II	RGGWCCY	1 cut(s)	2299
Psp6I	CCWGG	8 cut(s)	57, 104, 821, 1489, 1555, 1695, 1720, 2548
PspCI	CACGTG	1 cut(s)	845
PspEI	GGTNACC	1 cut(s)	825
PspGI	CCWGG	8 cut(s)	57, 104, 821, 1489, 1555, 1695, 1720, 2548
PspN4I	GGNNCC	9 cut(s)	290, 495, 975, 1155, 1209, 1664, 2300, 2336, 2526
PspPI	GGNCC	7 cut(s)	108, 182, 212, 289, 1663, 2299, 2552
PspPPI	RGGWCCY	1 cut(s)	2299
PsrI	GAACNNNNNNTAC	2 cut(s)	2362, 2394
PstI	CTGCAG	2 cut(s)	2423, 2586
PstNI	CAGNNNCTG	1 cut(s)	1232
PsuI	RGATCY	3 cut(s)	973, 1113, 1907
RsaI	GTAC	7 cut(s)	495, 513, 546, 942, 1406, 1431, 1470
RsaNI	GTAC	7 cut(s)	494, 512, 545, 941, 1405, 1430, 1469
SacI	GAGCTC	1 cut(s)	2515
SapI	GCTCTTC	2 cut(s)	1732, 2085
SaqAI	TTAA	6 cut(s)	1181, 1604, 1775, 1881, 2268, 2626
SatI	GCNGC	8 cut(s)	63, 269, 352, 1411, 2117, 2307, 2358, 2582
Sau96I	GGNCC	7 cut(s)	108, 182, 212, 289, 1663, 2299, 2552
SchI	GAGTC	3 cut(s)	656, 1621, 2527
ScrFI	CCNGG	8 cut(s)	59, 106, 823, 1491, 1557, 1697, 1722, 2550
SduI	GDGCHC	2 cut(s)	82, 2515
SfaNI	GCATC	3 cut(s)	978, 2393, 2624
SfcI	CTRYAG	5 cut(s)	1086, 1824, 2005, 2419, 2582
SfoI	GGCGCC	1 cut(s)	2526
SfuI	TTCGAA	1 cut(s)	2397
SinI	GGWCC	6 cut(s)	108, 182, 212, 289, 2299, 2552
SsiI	CCGC	5 cut(s)	63, 397, 401, 440, 2571
SspDI	GGCGCC	1 cut(s)	2524
SspI	AATATT	1 cut(s)	1762
SspMI	CTAG	4 cut(s)	606, 2217, 2405, 2438
SstI	GAGCTC	1 cut(s)	2515
StyD4I	CCNGG	8 cut(s)	57, 104, 821, 1489, 1555, 1695, 1720, 2548
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	8 cut(s)	516, 527, 659, 772, 1198, 1234, 2129, 2559
TaiI	ACGT	2 cut(s)	847, 1435
TaqI	TCGA	3 cut(s)	307, 2185, 2397
TatI	WGTACW	2 cut(s)	544, 1404
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	5 cut(s)	160, 1052, 1058, 1441, 2399
Tru1I	TTAA	6 cut(s)	1181, 1604, 1775, 1881, 2268, 2626
Tru9I	TTAA	6 cut(s)	1181, 1604, 1775, 1881, 2268, 2626
TscAI	CASTG	7 cut(s)	177, 664, 1250, 1554, 2134, 2261, 2564
TseFI	GTSAC	4 cut(s)	148, 659, 825, 1969
TseI	GCWGC	7 cut(s)	268, 351, 1410, 2116, 2306, 2357, 2581
Tsp45I	GTSAC	4 cut(s)	148, 659, 825, 1969
TspDTI	ATGAA	7 cut(s)	309, 867, 1008, 1146, 1319, 1664, 2045
TspGWI	ACGGA	3 cut(s)	225, 662, 2132
TspRI	CASTG	7 cut(s)	177, 664, 1250, 1554, 2134, 2261, 2564
Van91I	CCANNNNNTGG	2 cut(s)	105, 1349
VpaK11BI	GGWCC	6 cut(s)	108, 182, 212, 289, 2299, 2552
XapI	RAATTY	4 cut(s)	1325, 1398, 1957, 2206
XbaI	TCTAGA	2 cut(s)	2216, 2404
XceI	RCATGY	1 cut(s)	2497
XmiI	GTMKAC	2 cut(s)	1866, 2008
XmnI	GAANNNNTTC	3 cut(s)	1716, 1935, 1960
XspI	CTAG	4 cut(s)	606, 2217, 2405, 2438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.