MD00G1127800.v1.1

Phylloplanin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0002452
Physical Location & Seq
Reverse (-)
27174217 .. 27175275
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1127800.v1.1.491

Sequence Viewer

Length: 483 bp
ATGGCTTTCAAAGCAACCCTCTTTGTGTTCCTCTTGGTTGCTGCAGTGGCGATAGTACTAGTTCCAATGGCAGAAGCTCAACTTGGGCTGATCAGCGGCCTCCTTGGTCTCATTCGCATACAAGGAACTCTATTCTGCACTCCCAACGGTAATGTGGGTACCGGTGGTGCTACCGCTACCCCAGTATTCTCAAATGCTACTGTTCAACTGTTGTGTGGAACTGCGGGGAATGTGATTTCAACTGTGACAACTAATGGTAGCGGAATCTTTTCAATCTTGTTGGACCCTCTCCAGTTTCTTCTCAATTCACTACTGTCGGATTGCAAGCTGCTGGTTAGGACACCGCTGTCCGCCTGCAACGCAAGTCTATCCGGGTTGACTGGCCTTCTCTCATCACCGTTGCAGTTTATCGGAAATACCATCGCTGGCCTCCTCAGCATCGTCAACATCATTCCAGTCGGCTTCAACCTCATAAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

161

Amino Acids

16.3

Weight (kDa)

7.66

Isoelectric Point (pI)

18.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 6 cut(s) 96, 174, 224, 261, 344, 351
AfaI GTAC 2 cut(s) 57, 160
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 5 cut(s) 10, 206, 240, 273, 466
AhlI ACTAGT 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AluBI AGCT 2 cut(s) 77, 328
AluI AGCT 2 cut(s) 77, 328
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 3 cut(s) 97, 382, 427
ApeKI GCWGC 2 cut(s) 41, 328
AsiGI ACCGGT 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 268
Asp718I GGTACC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 387
AvaII GGWCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 158
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 28, 315
BccI CCATC 1 cut(s) 428
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 113
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 3 cut(s) 42, 97, 329
BlsI GCNGC 3 cut(s) 43, 98, 330
BmcAI AGTACT 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 160, 285
BmrFI CCNGG 1 cut(s) 373
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 4 cut(s) 182, 292, 385, 455
BseDI CCNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 448
BseNI ACTGG 4 cut(s) 182, 292, 385, 455
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 2 cut(s) 28, 315
BsgI GTGCAG 1 cut(s) 121
BshFI GGCC 3 cut(s) 99, 384, 429
BshNI GGYRCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 161
BsiSI CCGG 2 cut(s) 162, 372
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 3 cut(s) 99, 384, 429
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 6 cut(s) 96, 174, 224, 261, 344, 351
BspANI GGCC 3 cut(s) 99, 384, 429
BspCNI CTCAG 1 cut(s) 447
BspLI GGNNCC 2 cut(s) 160, 285
BspMAI CTGCAG 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 4 cut(s) 182, 292, 385, 455
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 6 cut(s) 149, 202, 210, 244, 315, 399
BstC8I GCNNGC 3 cut(s) 326, 355, 427
BstDEI CTNAG 1 cut(s) 434
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 11, 47, 359, 435
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 28, 315
BsuRI GGCC 3 cut(s) 99, 384, 429
BtgZI GCGATG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 326, 355, 427
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 56, 159
CspAI ACCGGT 1 cut(s) 161
CviJI RGCY 8 cut(s) 5, 77, 88, 99, 328, 384, 429, 462
CviKI_1 RGCY 8 cut(s) 5, 77, 88, 99, 328, 384, 429, 462
CviQI GTAC 2 cut(s) 56, 159
DdeI CTNAG 1 cut(s) 434
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EciI GGCGGA 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaiI YATR 2 cut(s) 119, 473
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 42, 97, 329
Fsp4HI GCNGC 3 cut(s) 42, 97, 329
FspBI CTAG 1 cut(s) 59
GluI GCNGC 3 cut(s) 42, 97, 329
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 3 cut(s) 99, 384, 429
HapII CCGG 2 cut(s) 162, 372
HincII GTYRAC 2 cut(s) 378, 445
HindII GTYRAC 2 cut(s) 378, 445
HinfI GANTC 1 cut(s) 264
HpaII CCGG 2 cut(s) 162, 372
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 2 cut(s) 378, 445
Hpy188I TCNGA 2 cut(s) 319, 413
Hpy8I GTNNAC 2 cut(s) 378, 445
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 6 cut(s) 149, 202, 210, 244, 315, 399
HpyCH4V TGCA 5 cut(s) 44, 138, 324, 357, 403
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 47, 359, 435
HpyF3I CTNAG 1 cut(s) 434
KpnI GGTACC 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 9 cut(s) 175, 195, 305, 317, 366, 367, 385, 411, 468
Lsp1109I GCAGC 2 cut(s) 28, 315
LweI GCATC 1 cut(s) 447
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 290
MluCI AATT 2 cut(s) 304, 478
MmeI TCCRAC 2 cut(s) 261, 297
MnlI CCTC 7 cut(s) 29, 41, 110, 297, 440, 443, 479
MroXI GAANNNNTTC 1 cut(s) 268
MseI TTAA 1 cut(s) 481
MspA1I CMGCKG 2 cut(s) 96, 346
MspI CCGG 2 cut(s) 162, 372
MspR9I CCNGG 1 cut(s) 373
MwoI GCNNNNNNNGC 4 cut(s) 11, 47, 359, 435
NciI CCSGG 1 cut(s) 373
NdeII GATC 1 cut(s) 90
NlaIV GGNNCC 2 cut(s) 160, 285
NmuCI GTSAC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 264
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 3 cut(s) 43, 98, 330
PspN4I GGNNCC 2 cut(s) 160, 285
PspPI GGNCC 1 cut(s) 283
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 2 cut(s) 57, 160
RsaNI GTAC 2 cut(s) 56, 159
SaqAI TTAA 1 cut(s) 481
SatI GCNGC 3 cut(s) 42, 97, 329
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 283
ScaI AGTACT 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 373
SetI ASST 3 cut(s) 79, 330, 471
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 283
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 2 cut(s) 304, 478
SsiI CCGC 6 cut(s) 96, 174, 224, 261, 344, 351
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 6 cut(s) 149, 202, 210, 244, 315, 399
TasI AATT 2 cut(s) 304, 478
TatI WGTACW 1 cut(s) 55
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 41, 328
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 1 cut(s) 59
ZrmI AGTACT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.