Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Reverse (-)

22337214 .. 22338310

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCTCCTTCAAAACACTTCTCTTTGTTTCGCTCTTGGTTGTTGCCGCACTGGCAGCAGTTCCGATCGCCGAAGCGCAACTTATTGGCCTGATCAACCGGATCTTTCAGCTGATCCGCATACAAGGAACTTTGTTTTGCACCGCCAATGGCCGTGTCAGTACTGCTGGCGCCTCCCTTACACCAGTATTCCCAAATGCTACTGTCGTACTGCAATGTGGATCTGGAAATGTGATATCTACTGCAACTACGAATGCCTCGGGAGTCTTTTCAATCCTGCTAGATCCTCTCCAGTTTCTTCTATCTTCACTCTTATCTAATTGCAAGCTCGTGGTTACCACACCGCTCTCTAGCTGCAACTCTAGTTTGTCCGGAACCCAGATACTTGAATCTGCCTTGCAGTTCATTGGAAACACCCTCCTCGGCCTCCTTACCATCATCAATGTCATTCCGGCTGGCTTCATCGTCAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

159

Amino Acids

16.31

Weight (kDa)

8.5

Isoelectric Point (pI)

23.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	4 cut(s)	48, 118, 144, 344
AclWI	GGATC	4 cut(s)	109, 110, 229, 278
AcoI	YGGCCR	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	163, 210
AgsI	TTSAA	3 cut(s)	13, 273, 389
AluBI	AGCT	3 cut(s)	112, 328, 354
AluI	AGCT	3 cut(s)	112, 328, 354
AlwI	GGATC	4 cut(s)	109, 110, 229, 278
Ama87I	CYCGRG	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	4 cut(s)	3, 88, 151, 424
ApeKI	GCWGC	2 cut(s)	56, 354
AspLEI	GCGC	2 cut(s)	79, 173
AvaI	CYCGRG	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	68, 341
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	138
BclI	TGATCA	1 cut(s)	93
BfaI	CTAG	3 cut(s)	281, 351, 363
BfoI	RGCGCY	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	3 cut(s)	48, 57, 355
BlsI	GCNGC	3 cut(s)	49, 58, 356
BmcAI	AGTACT	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	172, 376
BpmI	CTGGAG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	258, 421
BsaWI	WCCGGW	2 cut(s)	99, 371
Bse1I	ACTGG	3 cut(s)	57, 185, 292
Bse3DI	GCAATG	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	258, 421
BseMI	GCAATG	1 cut(s)	221
BseNI	ACTGG	3 cut(s)	57, 185, 292
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	68, 341
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	5, 90, 153, 426
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	100, 372, 452
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	5, 90, 153, 426
BsoBI	CYCGRG	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
BspACI	CCGC	4 cut(s)	48, 118, 144, 344
BspANI	GGCC	4 cut(s)	5, 90, 153, 426
BspEI	TCCGGA	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	172, 376
BspPI	GGATC	4 cut(s)	109, 110, 229, 278
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	3 cut(s)	57, 185, 292
BssECI	CCNNGG	2 cut(s)	258, 421
BssMI	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	169, 326, 457
BstEII	GGTNACC	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	79, 173
BstKTI	GATC	6 cut(s)	69, 96, 105, 117, 224, 286
BstMBI	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 56
BstPI	GGTNACC	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	68, 341
BstX2I	RGATCY	3 cut(s)	102, 221, 283
BstYI	RGATCY	3 cut(s)	102, 221, 283
BsuRI	GGCC	4 cut(s)	5, 90, 153, 426
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	169, 326, 457
CfoI	GCGC	2 cut(s)	79, 173
Csp6I	GTAC	2 cut(s)	162, 209
CviJI	RGCY	9 cut(s)	5, 90, 112, 153, 328, 354, 426, 455, 459
CviKI_1	RGCY	9 cut(s)	5, 90, 112, 153, 328, 354, 426, 455, 459
CviQI	GTAC	2 cut(s)	162, 209
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	6 cut(s)	68, 95, 104, 116, 223, 285
DpnII	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
EaeI	YGGCCR	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
FaiI	YATR	1 cut(s)	122
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	48, 57, 355
Fsp4HI	GCNGC	3 cut(s)	48, 57, 355
FspBI	CTAG	3 cut(s)	281, 351, 363
GlaI	GCGC	2 cut(s)	78, 172
GluI	GCNGC	3 cut(s)	48, 57, 355
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	4 cut(s)	5, 90, 153, 426
HapII	CCGG	3 cut(s)	100, 372, 452
HhaI	GCGC	2 cut(s)	79, 173
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	2 cut(s)	77, 171
HinP1I	GCGC	2 cut(s)	77, 171
HinfI	GANTC	2 cut(s)	264, 389
HpaII	CCGG	3 cut(s)	100, 372, 452
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	225, 261, 372
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	141, 214, 245, 324, 357, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 56
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	2 cut(s)	77, 171
KasI	GGCGCC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
Lsp1109I	GCAGC	2 cut(s)	68, 341
MaeI	CTAG	3 cut(s)	281, 351, 363
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	6 cut(s)	68, 95, 104, 116, 223, 285
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
MboII	GAAGA	2 cut(s)	290, 297
MflI	RGATCY	3 cut(s)	102, 221, 283
MluCI	AATT	1 cut(s)	319
Mly113I	GGCGCC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	16, 184, 268, 297, 428, 431, 437
MroI	TCCGGA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	3 cut(s)	100, 372, 452
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	53, 56
NarI	GGCGCC	1 cut(s)	171
NdeII	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
NlaIV	GGNNCC	2 cut(s)	172, 376
NmeAIII	GCCGAG	1 cut(s)	402
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	49, 58, 356
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	1 cut(s)	272
PluTI	GGCGCC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	272
PspEI	GGTNACC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	172, 376
PsuI	RGATCY	3 cut(s)	102, 221, 283
PvuI	CGATCG	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	163, 210
RsaNI	GTAC	2 cut(s)	162, 209
SatI	GCNGC	3 cut(s)	48, 57, 355
Sau3AI	GATC	6 cut(s)	66, 93, 102, 114, 221, 283
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	273
SetI	ASST	3 cut(s)	114, 330, 356
SfoI	GGCGCC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	4 cut(s)	48, 118, 144, 344
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	3 cut(s)	281, 351, 363
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	1 cut(s)	319
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	389
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	2 cut(s)	56, 354
TspDTI	ATGAA	2 cut(s)	394, 451
TspRI	CASTG	1 cut(s)	57
XspI	CTAG	3 cut(s)	281, 351, 363
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.