AT3G18090

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002206
Physical Location & Seq
Forward (+)
6194509 .. 6200424
5916 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18090.3

Sequence Viewer

Length: 3168 bp
ATGGCATGCAGGCTTCAGAACATGACATACTCAGCAAGGATCAAAGTCAATGCCCAAGTTGAGGTGTTCAAAAAAATTGTTATTAAACACGACAAATTCAAGACTGGACAAGATGAATATGTCGAGAAGGAGATACTGGATGTCAAAAAACAGGACATTCTAATTGGTAGCATACCTGTCATGGTGAAATCTGTCCTTTGCAAAACTAGCGAGAAAGGAAAAGAAAACTGCAAAAAGGGGAATTGTGCCTTTGATCAGGGTGGATATTTTGTGATAAAGGGGGCTGAGAAGGTGTTTATAGCTCAAGAACAGATGTGCACAAAGAGATTGTGGATTTCTAATTCACCATGGACAGTCTCCTTCAGGTCCGAAACTAAAAGAAATAGGTTCATTGTGCGCCTCTCGGAGAATGAGAAAGCAGAAGACTATAAGATAATGGAGAAAGTACTGACAGTGTACTTCTTGTCGACTGAGATTCCAGTCTGGCTCCTGTTCTTTGCGTTGGGTGTTTCATCAGACAAAGAAGCCATGGATCTAATTGCTTTCGATGGTGATGATGCAAGCATTACCAACAGTCTCATAGCTTCTATCCATGAAGCTGATGCAGTGTGTGAAGCTTTTCGCTGTGGGAACAATGCCCTAACATATGTTGAACATCAGATCAAAAGCACCAAATTCCCTCCTGCTGAAAGTGTGGATGATTGCCTCCGTCTGTATTTGTTTCCATGCCTCCAAGGTTTGAAGAAGAAAGCCCGATTCCTGGGCTATATGGTGAAGTGCCTTTTGAGCGCGTATGCGGGAAAACGAAAATGTGAAAACAGGGACAGTTTCCGGAATAAACGAATTGAGCTCGCTGGAGAACTGTTGGAGAGGGAGATAAGGGTGCATCTTGCACATGCTAGAAGAAAGATGACCAGGGCCATGCAGAAACAACTCTCAGGCGATGGCGATTTGAAGCCTATAGAGCATTATTTGGATGCTTCCGTTATCACCAATGGGCTTAATAGAGCCTTCTCCACTGGAGCATGGTCTCATCCTTTCAGGAAGATGGAAAGGGTCTCAGGTGTTGTAGCTAATTTGGGTCGTGCAAATCCATTGCAGACTCTGATTGATCTGAGGAGAACGCGACAGCAAGTCCTTTATACCGGCAAGGTTGGAGATGCTAGACATCCGCATCCTTCTCACTGGGGCAGAGTATGCTTTTTGTCAACTCCAGATGGTGAAAATTGTGGTCTTGTGAAGAACATGTCTCTTCTTGGACTTGTTAGCACTCAAGGTTTGGAGTCTGTGGTGGAAATGCTCTTTACTTGCGGAATGGAAGAGCTGATGAATGATACCAGCACACCATTGTGTGGCAAACACAAAGTTCTTCTCAATGGAGACTGGGTTGGATTATGTGCAGATTCTGAATCCTTTGTCGGGGAGTTAAAAAGCAGGCGGCGCCAAAGTGAATTACCTCTCGAGATGGAAATCAAGCGAGATAAAGATGACAATGAGGTGAGAATTTTCACTGACGCTGGTAGACTACTCCGACCTCTCTTGGTTGTGGAAAATCTCCACAAGTTGAAGCAAGACAAACCTACACAGTATCCTTTTAAGCATCTTCTTGACCAAGGGATTCTCGAGCTGATCGGGATTGAGGAAGAAGAAGACTGTACTACAGCATGGGGAATCAAACAGCTTCTGAAGGAACCAAAGAATTACACGCATTGCGAATTGGACCTATCATTCCTGTTGGGTGTGAGCTGTGCAATTGTCCCATTTGCAAATCACGATCATGGGAAAAGAGTTCTTTACCAGTCTCAGAAGCATTGCCAACAAGCCATCGGATTCTCATCAACGAACCCTAACATCCGCTGCGATACGCTGTCCCAGCAGCTGTTCTATCCCCAAAAGCCACTTTTCAAGACATTGGCGTCAGAGTGTCTTGAAAAAGAAGTTCTATTTAATGGCCAGAACGCAATTGTTGCTGTGAATGTTCATCTCGGGTACAACCAAGAGGACTCCATTGTGATGAACAAGGCTTCATTGGAACGTGGTATGTTCCGTTCAGAGCAGATTAGAAGCTACAAAGCAGAGGTTGATACTAAAGACTCGGAGAAGAGGAAGAAGATGGATGAGCTTGTTCAGTTTGGAAAGACATACAGCAAAATCGGCAAAGTAGACAGCCTTGAAGATGACGGGTTTCCTTTCATTGGTGCTAACATGAGTACTGGCGATATTGTCATTGGCAGATGCACCGAGTCTGGGGCTGATCACAGTATAAAGCTCAAGCACACTGAGAGAGGAATTGTGCAAAAAGTGGTATTATCTTCTAATGATGAAGGGAAGAATTTTGCAGCGGTTTCTCTGAGACAGGTTCGTTCTCCATGCCTTGGAGATAAGTTTTCCAGTATGCATGGCCAGAAGGGTGTTTTAGGCTATCTAGAGGAACAGCAGAATTTTCCTTTCACGATCCAAGGCATAGTTCCTGATATTGTGATAAACCCGCACGCTTTCCCTTCTAGGCAGACACCAGGTCAACTCTTGGAGGCTGCTCTCTCCAAAGGAATCGCTTGTCCTATACAAAAGAAGGAGGGTAGCTCTGCTGCATACACCAAATTGACACGTCATGCCACTCCTTTCTCCACTCCGGGTGTCACTGAAATCACCGAGCAGCTTCACAGGGCCGGCTTTTCAAGATGGGGAAACGAAAGGGTCTACAATGGTAGATCGGGTGAGATGATGCGCTCTCTGATATTCATGGGCCCAACTTTCTACCAGCGACTTGTCCACATGTCAGAGAACAAAGTCAAGTTCAGGAACACCGGACCAGTCCACCCGCTCACACGCCAGCCAGTCGCAGACCGGAAGAGGTTTGGCGGGATAAGATTTGGAGAAATGGAGCGAGACTGCCTAATAGCTCACGGTGCATCCGCTAATCTGCACGAGCGGCTCTTCACTCTAAGTGACTCTTCTCAGATGCACATCTGCAGAAAATGCAAGACCTATGCGAATGTGATCGAGAGGACTCCAAGCAGTGGAAGAAAGATCAGAGGGCCATATTGCAGAGTGTGCGCATCCTCCGACCATGTGGTTAGGGTCTATGTTCCTTATGGAGCTAAGCTTCTTTGTCAGGAGCTGTTCAGCATGGGCATTACTCTCAACTTCGACACCAAGCTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1055

Amino Acids

118.97

Weight (kDa)

8.95

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_1 PF04563 2 - 318 1.1e-25 RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 137 - 283 2.1e-11 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 361 - 419 9.1e-15 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 456 - 517 8.1e-20 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6 PF00562 583 - 889 5.7e-76 RNA polymerase Rpb2, domain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1915
Acc16I TGCGCA 1 cut(s) 3058
AccB1I GGYRCC 1 cut(s) 1440
AccB7I CCANNNNNTGG 3 cut(s) 1352, 2375, 3020
AccBSI CCGCTC 2 cut(s) 2824, 2932
AccI GTMKAC 4 cut(s) 467, 1522, 2163, 2700
AccII CGCG 2 cut(s) 791, 1126
AccIII TCCGGA 1 cut(s) 831
AclWI GGATC 3 cut(s) 47, 540, 2449
AcoI YGGCCR 2 cut(s) 1951, 2401
AcsI RAATTY 5 cut(s) 95, 674, 1503, 2332, 2440
AcuI CTGAAG 2 cut(s) 346, 1706
AcyI GRCGYC 2 cut(s) 1441, 1916
AfaI GTAC 5 cut(s) 447, 458, 1657, 1991, 2212
AfiI CCNNNNNNNGG 8 cut(s) 61, 760, 1352, 1419, 2195, 2247, 2375, 3020
AflIII ACRYGT 3 cut(s) 1245, 2606, 2775
AhdI GACNNNNNGTC 2 cut(s) 1133, 2517
AjiI CACGTC 1 cut(s) 2609
AjnI CCWGG 3 cut(s) 759, 914, 2515
AjuI GAANNNNNNNTTGG 2 cut(s) 2451, 2483
AleI CACNNNNGTG 1 cut(s) 1348
Alw21I GWGCWC 2 cut(s) 320, 852
Alw26I GTCTC 9 cut(s) 361, 581, 1035, 1063, 1254, 1374, 1806, 2347, 2883
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 3 cut(s) 47, 540, 2449
AlwNI CAGNNNCTG 5 cut(s) 1105, 1406, 1684, 1879, 3121
Ama87I CYCGRG 3 cut(s) 1460, 1622, 1985
Aor13HI TCCGGA 1 cut(s) 831
AoxI GGCC 6 cut(s) 918, 1951, 2401, 2667, 2746, 3038
ApaI GGGCCC 1 cut(s) 2750
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 6 cut(s) 1857, 1876, 2339, 2534, 2588, 2656
ApoI RAATTY 5 cut(s) 95, 674, 1503, 2332, 2440
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 5 cut(s) 399, 791, 1443, 2730, 3059
AspS9I GGNCC 8 cut(s) 366, 918, 1720, 2667, 2746, 2747, 2810, 3038
AsuC2I CCSGG 1 cut(s) 2634
AsuHPI GGTGA 9 cut(s) 196, 336, 563, 784, 982, 1232, 1510, 2641, 2729
AvaI CYCGRG 3 cut(s) 1460, 1622, 1985
AvaII GGWCC 3 cut(s) 366, 1720, 2810
BaeGI GKGCMC 2 cut(s) 320, 2750
BalI TGGCCA 2 cut(s) 1953, 2403
BanI GGYRCC 1 cut(s) 1440
BanII GRGCYC 2 cut(s) 852, 2750
BauI CACGAG 1 cut(s) 2927
BbsI GAAGAC 2 cut(s) 429, 1656
Bbv12I GWGCWC 2 cut(s) 320, 852
BbvI GCAGC 6 cut(s) 1844, 1888, 2351, 2521, 2575, 2668
BccI CCATC 8 cut(s) 542, 938, 1042, 1211, 1459, 1832, 2107, 2676
BciT130I CCWGG 3 cut(s) 761, 916, 2517
BciVI GTATCC 1 cut(s) 1599
BclI TGATCA 2 cut(s) 253, 2254
BcnI CCSGG 1 cut(s) 2634
BcoDI GTCTC 9 cut(s) 361, 581, 1035, 1063, 1254, 1374, 1806, 2347, 2883
BfaI CTAG 5 cut(s) 207, 900, 1164, 2426, 2505
BfmI CTRYAG 3 cut(s) 960, 1659, 2971
BfoI RGCGCY 1 cut(s) 1444
BfuI GTATCC 1 cut(s) 1599
BisI GCNGC 8 cut(s) 1439, 1858, 1877, 2340, 2535, 2589, 2657, 2933
BlpI GCTNAGC 1 cut(s) 3102
BlsI GCNGC 8 cut(s) 1440, 1859, 1878, 2341, 2536, 2590, 2658, 2934
BmcAI AGTACT 2 cut(s) 447, 2212
Bme1390I CCNGG 4 cut(s) 761, 916, 2517, 2634
Bme18I GGWCC 3 cut(s) 366, 1720, 2810
BmeRI GACNNNNNGTC 2 cut(s) 1133, 2517
BmeT110I CYCGRG 3 cut(s) 1460, 1622, 1985
BmgBI CACGTC 1 cut(s) 2609
BmgT120I GGNCC 8 cut(s) 366, 918, 1720, 2667, 2746, 2747, 2810, 3038
BmiI GGNNCC 4 cut(s) 488, 1442, 1692, 2748
BmrFI CCNGG 4 cut(s) 761, 916, 2517, 2634
BmrI ACTGGG 2 cut(s) 1195, 1393
BmuI ACTGGG 2 cut(s) 1195, 1393
BpiI GAAGAC 2 cut(s) 429, 1656
BplI GAGNNNNNCTC 2 cut(s) 2567, 2599
BpmI CTGGAG 3 cut(s) 876, 1041, 1197
Bpu1102I GCTNAGC 1 cut(s) 3102
BpuEI CTTGAG 3 cut(s) 288, 1257, 2255
BpuMI CCSGG 1 cut(s) 2634
BsaBI GATNNNNATC 3 cut(s) 1469, 1834, 2966
BsaHI GRCGYC 2 cut(s) 1441, 1916
BsaI GGTCTC 2 cut(s) 1035, 1063
BsaJI CCNNGG 8 cut(s) 347, 528, 733, 760, 915, 1612, 2374, 2458
BsaWI WCCGGW 3 cut(s) 831, 2807, 2847
BsaXI ACNNNNNCTCC 2 cut(s) 1371, 1401
Bsc4I CCNNNNNNNGG 8 cut(s) 61, 760, 1352, 1419, 2195, 2247, 2375, 3020
Bse118I RCCGGY 2 cut(s) 1145, 2669
Bse3DI GCAATG 3 cut(s) 1094, 1708, 1810
Bse8I GATNNNNATC 3 cut(s) 1469, 1834, 2966
BseAI TCCGGA 1 cut(s) 831
BseBI CCWGG 3 cut(s) 761, 916, 2517
BseDI CCNNGG 8 cut(s) 347, 528, 733, 760, 915, 1612, 2374, 2458
BseJI GATNNNNATC 3 cut(s) 1469, 1834, 2966
BseLI CCNNNNNNNGG 8 cut(s) 61, 760, 1352, 1419, 2195, 2247, 2375, 3020
BseMI GCAATG 3 cut(s) 1094, 1708, 1810
BseRI GAGGAG 1 cut(s) 1132
BseSI GKGCMC 2 cut(s) 320, 2750
BseXI GCAGC 6 cut(s) 1844, 1888, 2351, 2521, 2575, 2668
BseYI CCCAGC 1 cut(s) 1872
BsgI GTGCAG 2 cut(s) 1419, 2909
Bsh1236I CGCG 2 cut(s) 791, 1126
BshFI GGCC 6 cut(s) 920, 1953, 2403, 2669, 2748, 3040
BshNI GGYRCC 1 cut(s) 1440
BsiHKAI GWGCWC 2 cut(s) 320, 852
BsiHKCI CYCGRG 3 cut(s) 1460, 1622, 1985
BsiSI CCGG 6 cut(s) 832, 1146, 2633, 2670, 2808, 2848
BslFI GGGAC 3 cut(s) 836, 1742, 1855
BslI CCNNNNNNNGG 8 cut(s) 61, 760, 1352, 1419, 2195, 2247, 2375, 3020
BsmAI GTCTC 9 cut(s) 361, 581, 1035, 1063, 1254, 1374, 1806, 2347, 2883
BsmFI GGGAC 3 cut(s) 836, 1742, 1855
BsnI GGCC 6 cut(s) 920, 1953, 2403, 2669, 2748, 3040
Bso31I GGTCTC 2 cut(s) 1035, 1063
BsoBI CYCGRG 3 cut(s) 1460, 1622, 1985
Bsp120I GGGCCC 1 cut(s) 2746
Bsp1286I GDGCHC 3 cut(s) 320, 852, 2750
Bsp13I TCCGGA 1 cut(s) 831
Bsp1720I GCTNAGC 1 cut(s) 3102
Bsp19I CCATGG 2 cut(s) 347, 528
BspANI GGCC 6 cut(s) 920, 1953, 2403, 2669, 2748, 3040
BspEI TCCGGA 1 cut(s) 831
BspFNI CGCG 2 cut(s) 791, 1126
BspLI GGNNCC 4 cut(s) 488, 1442, 1692, 2748
BspMAI CTGCAG 1 cut(s) 2975
BspPI GGATC 3 cut(s) 47, 540, 2449
BspQI GCTCTTC 2 cut(s) 1314, 2942
BspT107I GGYRCC 1 cut(s) 1440
BspTNI GGTCTC 2 cut(s) 1035, 1063
BsrBI CCGCTC 2 cut(s) 2824, 2932
BsrDI GCAATG 3 cut(s) 1094, 1708, 1810
BsrFI RCCGGY 2 cut(s) 1145, 2669
BssAI RCCGGY 2 cut(s) 1145, 2669
BssECI CCNNGG 8 cut(s) 347, 528, 733, 760, 915, 1612, 2374, 2458
BssNI GRCGYC 2 cut(s) 1441, 1916
BssSI CACGAG 1 cut(s) 2927
BssT1I CCWWGG 6 cut(s) 347, 528, 733, 1612, 2374, 2458
Bst2BI CACGAG 1 cut(s) 2927
Bst2UI CCWGG 3 cut(s) 761, 916, 2517
Bst4CI ACNGT 9 cut(s) 355, 454, 575, 827, 864, 1587, 1655, 2261, 2909
Bst6I CTCTTC 6 cut(s) 1257, 1314, 2096, 2846, 2942, 2959
BstACI GRCGYC 2 cut(s) 1441, 1916
BstAPI GCANNNNNTGC 4 cut(s) 1197, 1967, 2979, 3054
BstC8I GCNNGC 8 cut(s) 7, 11, 562, 852, 1436, 2493, 2671, 2834
BstDSI CCRYGG 2 cut(s) 347, 528
BstFNI CGCG 2 cut(s) 791, 1126
BstH2I RGCGCY 1 cut(s) 1444
BstHHI GCGC 5 cut(s) 399, 791, 1443, 2730, 3059
BstMAI GTCTC 9 cut(s) 361, 581, 1035, 1063, 1254, 1374, 1806, 2347, 2883
BstNI CCWGG 3 cut(s) 761, 916, 2517
BstNSI RCATGY 4 cut(s) 9, 899, 1249, 2779
BstSCI CCNGG 4 cut(s) 759, 914, 2515, 2632
BstSFI CTRYAG 3 cut(s) 960, 1659, 2971
BstSLI GKGCMC 2 cut(s) 320, 2750
BstUI CGCG 2 cut(s) 791, 1126
BstV1I GCAGC 6 cut(s) 1844, 1888, 2351, 2521, 2575, 2668
BstV2I GAAGAC 2 cut(s) 429, 1656
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuI GTATCC 1 cut(s) 1599
BsuRI GGCC 6 cut(s) 920, 1953, 2403, 2669, 2748, 3040
BtgI CCRYGG 2 cut(s) 347, 528
BtgZI GCGATG 1 cut(s) 957
BtrI CACGTC 1 cut(s) 2609
BtsI GCAGTG 2 cut(s) 612, 3025
BtsIMutI CAGTG 8 cut(s) 459, 612, 1017, 1183, 1509, 2277, 2640, 3025
Cac8I GCNNGC 8 cut(s) 7, 11, 562, 852, 1436, 2493, 2671, 2834
CaiI CAGNNNCTG 5 cut(s) 1105, 1406, 1684, 1879, 3121
CfoI GCGC 5 cut(s) 399, 791, 1443, 2730, 3059
Cfr10I RCCGGY 2 cut(s) 1145, 2669
Cfr13I GGNCC 8 cut(s) 366, 918, 1720, 2667, 2746, 2747, 2810, 3038
CseI GACGC 2 cut(s) 1523, 1905
CsiI ACCWGGT 1 cut(s) 2515
Csp6I GTAC 5 cut(s) 446, 457, 1656, 1990, 2211
CviQI GTAC 5 cut(s) 446, 457, 1656, 1990, 2211
DinI GGCGCC 1 cut(s) 1442
DrdI GACNNNNNNGTC 1 cut(s) 1915
DriI GACNNNNNGTC 2 cut(s) 1133, 2517
DseDI GACNNNNNNGTC 1 cut(s) 1915
EaeI YGGCCR 2 cut(s) 1951, 2401
Eam1104I CTCTTC 6 cut(s) 1257, 1314, 2096, 2846, 2942, 2959
Eam1105I GACNNNNNGTC 2 cut(s) 1133, 2517
EarI CTCTTC 6 cut(s) 1257, 1314, 2096, 2846, 2942, 2959
Ecl136II GAGCTC 1 cut(s) 850
Eco130I CCWWGG 6 cut(s) 347, 528, 733, 1612, 2374, 2458
Eco24I GRGCYC 2 cut(s) 852, 2750
Eco31I GGTCTC 2 cut(s) 1035, 1063
Eco47I GGWCC 3 cut(s) 366, 1720, 2810
Eco53kI GAGCTC 1 cut(s) 850
Eco57I CTGAAG 2 cut(s) 346, 1706
Eco88I CYCGRG 3 cut(s) 1460, 1622, 1985
EcoICRI GAGCTC 1 cut(s) 850
EcoRII CCWGG 3 cut(s) 759, 914, 2515
EcoT14I CCWWGG 6 cut(s) 347, 528, 733, 1612, 2374, 2458
EcoT22I ATGCAT 1 cut(s) 2400
EcoT38I GRGCYC 2 cut(s) 852, 2750
EgeI GGCGCC 1 cut(s) 1442
EheI GGCGCC 1 cut(s) 1442
ErhI CCWWGG 6 cut(s) 347, 528, 733, 1612, 2374, 2458
FalI AAGNNNNNCTT 2 cut(s) 2938, 2970
FaqI GGGAC 3 cut(s) 836, 1742, 1855
FauI CCCGC 4 cut(s) 790, 2496, 2829, 2855
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 2 cut(s) 253, 2254
FblI GTMKAC 4 cut(s) 467, 1522, 2163, 2700
Fnu4HI GCNGC 8 cut(s) 1439, 1858, 1877, 2340, 2535, 2589, 2657, 2933
FriOI GRGCYC 2 cut(s) 852, 2750
Fsp4HI GCNGC 8 cut(s) 1439, 1858, 1877, 2340, 2535, 2589, 2657, 2933
FspAI RTGCGCAY 1 cut(s) 3058
FspBI CTAG 5 cut(s) 207, 900, 1164, 2426, 2505
FspI TGCGCA 1 cut(s) 3058
GlaI GCGC 5 cut(s) 398, 790, 1442, 2729, 3058
GluI GCNGC 8 cut(s) 1439, 1858, 1877, 2340, 2535, 2589, 2657, 2933
GsaI CCCAGC 1 cut(s) 1876
GsuI CTGGAG 3 cut(s) 876, 1041, 1197
HaeII RGCGCY 1 cut(s) 1444
HaeIII GGCC 6 cut(s) 920, 1953, 2403, 2669, 2748, 3040
HapII CCGG 6 cut(s) 832, 1146, 2633, 2670, 2808, 2848
HgaI GACGC 2 cut(s) 1523, 1905
HhaI GCGC 5 cut(s) 399, 791, 1443, 2730, 3059
Hin1I GRCGYC 2 cut(s) 1441, 1916
Hin6I GCGC 5 cut(s) 397, 789, 1441, 2728, 3057
HinP1I GCGC 5 cut(s) 397, 789, 1441, 2728, 3057
HincII GTYRAC 3 cut(s) 468, 1209, 2522
HindII GTYRAC 3 cut(s) 468, 1209, 2522
HindIII AAGCTT 2 cut(s) 615, 3104
HpaII CCGG 6 cut(s) 832, 1146, 2633, 2670, 2808, 2848
HphI GGTGA 9 cut(s) 196, 336, 563, 784, 982, 1232, 1510, 2641, 2729
HpyCH4III ACNGT 9 cut(s) 355, 454, 575, 827, 864, 1587, 1655, 2261, 2909
HpyCH4IV ACGT 2 cut(s) 2035, 2608
HpySE526I ACGT 2 cut(s) 2035, 2608
Hsp92I GRCGYC 2 cut(s) 1441, 1916
HspAI GCGC 5 cut(s) 397, 789, 1441, 2728, 3057
KasI GGCGCC 1 cut(s) 1440
Kpn2I TCCGGA 1 cut(s) 831
KroI GCCGGC 1 cut(s) 2669
KroNI GCCGGC 1 cut(s) 2671
Ksp22I TGATCA 2 cut(s) 253, 2254
LguI GCTCTTC 2 cut(s) 1314, 2942
LmnI GCTCC 5 cut(s) 492, 1022, 2884, 3098, 3118
Lsp1109I GCAGC 6 cut(s) 1844, 1888, 2351, 2521, 2575, 2668
MabI ACCWGGT 1 cut(s) 2515
MaeI CTAG 5 cut(s) 207, 900, 1164, 2426, 2505
MaeII ACGT 2 cut(s) 2035, 2608
MaeIII GTNAC 2 cut(s) 2638, 2948
MbiI CCGCTC 2 cut(s) 2824, 2932
MfeI CAATTG 2 cut(s) 1752, 1962
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 3 cut(s) 320, 852, 2750
MlsI TGGCCA 2 cut(s) 1953, 2403
MluNI TGGCCA 2 cut(s) 1953, 2403
Mly113I GGCGCC 1 cut(s) 1441
MlyI GAGTC 7 cut(s) 1096, 1292, 1997, 2087, 2252, 2945, 3004
MmeI TCCRAC 5 cut(s) 846, 1135, 1369, 1555, 3090
Mox20I TGGCCA 2 cut(s) 1953, 2403
Mph1103I ATGCAT 1 cut(s) 2400
MroI TCCGGA 1 cut(s) 831
MroNI GCCGGC 1 cut(s) 2669
MroXI GAANNNNTTC 1 cut(s) 618
MscI TGGCCA 2 cut(s) 1953, 2403
MseI TTAA 5 cut(s) 84, 1002, 1427, 1596, 1947
MslI CAYNNNNRTG 3 cut(s) 1348, 1776, 2012
Msp20I TGGCCA 2 cut(s) 1953, 2403
MspA1I CMGCKG 3 cut(s) 1857, 1879, 2342
MspI CCGG 6 cut(s) 832, 1146, 2633, 2670, 2808, 2848
MspR9I CCNGG 4 cut(s) 761, 916, 2517, 2634
MunI CAATTG 2 cut(s) 1752, 1962
MvaI CCWGG 3 cut(s) 761, 916, 2517
MvnI CGCG 2 cut(s) 791, 1126
NaeI GCCGGC 1 cut(s) 2671
NarI GGCGCC 1 cut(s) 1441
NciI CCSGG 1 cut(s) 2634
NcoI CCATGG 2 cut(s) 347, 528
NdeI CATATG 1 cut(s) 646
NgoMIV GCCGGC 1 cut(s) 2669
NlaIV GGNNCC 4 cut(s) 488, 1442, 1692, 2748
NmuCI GTSAC 2 cut(s) 2638, 2948
NsbI TGCGCA 1 cut(s) 3058
NsiI ATGCAT 1 cut(s) 2400
NspI RCATGY 4 cut(s) 9, 899, 1249, 2779
OliI CACNNNNGTG 1 cut(s) 1348
PaeI GCATGC 1 cut(s) 9
PaeR7I CTCGAG 2 cut(s) 1460, 1622
PciI ACATGT 2 cut(s) 1245, 2775
PciSI GCTCTTC 2 cut(s) 1314, 2942
PdiI GCCGGC 1 cut(s) 2671
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 8 cut(s) 475, 756, 1403, 1409, 1618, 1671, 1830, 2550
PflMI CCANNNNNTGG 3 cut(s) 1352, 2375, 3020
PkrI GCNGC 8 cut(s) 1440, 1859, 1878, 2341, 2536, 2590, 2658, 2934
PleI GAGTC 7 cut(s) 1096, 1291, 1997, 2087, 2251, 2945, 3004
PluTI GGCGCC 1 cut(s) 1444
PpsI GAGTC 7 cut(s) 1096, 1291, 1997, 2087, 2251, 2945, 3004
PscI ACATGT 2 cut(s) 1245, 2775
Psp124BI GAGCTC 1 cut(s) 852
Psp6I CCWGG 3 cut(s) 759, 914, 2515
PspFI CCCAGC 1 cut(s) 1872
PspGI CCWGG 3 cut(s) 759, 914, 2515
PspN4I GGNNCC 4 cut(s) 488, 1442, 1692, 2748
PspOMI GGGCCC 1 cut(s) 2746
PspPI GGNCC 8 cut(s) 366, 918, 1720, 2667, 2746, 2747, 2810, 3038
PsrI GAACNNNNNNTAC 4 cut(s) 11, 43, 2032, 2064
PstI CTGCAG 1 cut(s) 2975
PstNI CAGNNNCTG 5 cut(s) 1105, 1406, 1684, 1879, 3121
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 1879
RsaI GTAC 5 cut(s) 447, 458, 1657, 1991, 2212
RsaNI GTAC 5 cut(s) 446, 457, 1656, 1990, 2211
RseI CAYNNNNRTG 3 cut(s) 1348, 1776, 2012
SacI GAGCTC 1 cut(s) 852
SalI GTCGAC 1 cut(s) 466
SapI GCTCTTC 2 cut(s) 1314, 2942
SaqAI TTAA 5 cut(s) 84, 1002, 1427, 1596, 1947
SatI GCNGC 8 cut(s) 1439, 1858, 1877, 2340, 2535, 2589, 2657, 2933
Sau96I GGNCC 8 cut(s) 366, 918, 1720, 2667, 2746, 2747, 2810, 3038
ScaI AGTACT 2 cut(s) 447, 2212
SchI GAGTC 7 cut(s) 1096, 1292, 1997, 2087, 2252, 2945, 3004
ScrFI CCNGG 4 cut(s) 761, 916, 2517, 2634
SduI GDGCHC 3 cut(s) 320, 852, 2750
SexAI ACCWGGT 1 cut(s) 2515
SfcI CTRYAG 3 cut(s) 960, 1659, 2971
SfoI GGCGCC 1 cut(s) 1442
Sfr274I CTCGAG 2 cut(s) 1460, 1622
SinI GGWCC 3 cut(s) 366, 1720, 2810
SlaI CTCGAG 2 cut(s) 1460, 1622
SmiMI CAYNNNNRTG 3 cut(s) 1348, 1776, 2012
SmlI CTYRAG 5 cut(s) 303, 1272, 1460, 1622, 2270
SmoI CTYRAG 5 cut(s) 303, 1272, 1460, 1622, 2270
SphI GCATGC 1 cut(s) 9
SspDI GGCGCC 1 cut(s) 1440
SspMI CTAG 5 cut(s) 207, 900, 1164, 2426, 2505
SstI GAGCTC 1 cut(s) 852
StyD4I CCNGG 4 cut(s) 759, 914, 2515, 2632
StyI CCWWGG 6 cut(s) 347, 528, 733, 1612, 2374, 2458
TaaI ACNGT 9 cut(s) 355, 454, 575, 827, 864, 1587, 1655, 2261, 2909
TaiI ACGT 2 cut(s) 2038, 2611
TaqI TCGA 7 cut(s) 123, 467, 546, 1461, 1623, 3003, 3150
TatI WGTACW 4 cut(s) 445, 456, 1655, 2210
TauI GCSGC 2 cut(s) 1441, 2935
TfiI GAWTC 8 cut(s) 475, 756, 1403, 1409, 1618, 1671, 1830, 2550
Tru1I TTAA 5 cut(s) 84, 1002, 1427, 1596, 1947
Tru9I TTAA 5 cut(s) 84, 1002, 1427, 1596, 1947
TscAI CASTG 8 cut(s) 459, 612, 1024, 1190, 1516, 2284, 2647, 3025
TseFI GTSAC 2 cut(s) 2638, 2948
TseI GCWGC 6 cut(s) 1857, 1876, 2339, 2534, 2588, 2656
Tsp45I GTSAC 2 cut(s) 2638, 2948
TspGWI ACGGA 3 cut(s) 698, 973, 2036
TspRI CASTG 8 cut(s) 459, 612, 1024, 1190, 1516, 2284, 2647, 3025
Van91I CCANNNNNTGG 3 cut(s) 1352, 2375, 3020
VneI GTGCAC 1 cut(s) 316
VpaK11BI GGWCC 3 cut(s) 366, 1720, 2810
XapI RAATTY 5 cut(s) 95, 674, 1503, 2332, 2440
XbaI TCTAGA 1 cut(s) 2425
XceI RCATGY 4 cut(s) 9, 899, 1249, 2779
XhoI CTCGAG 2 cut(s) 1460, 1622
XmiI GTMKAC 4 cut(s) 467, 1522, 2163, 2700
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 5 cut(s) 207, 900, 1164, 2426, 2505
ZrmI AGTACT 2 cut(s) 447, 2212
Zsp2I ATGCAT 1 cut(s) 2400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.