Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001715.1

Orthogroup ID

OG0002206

Physical Location & Seq

Genomic Coordinates Forward (+)

90496 .. 92274

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001715.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgaccagtcaaacaaggggaatgcagaatggcgaattgaagaacaagaggcttcacttggctggtgagcttctagagagagagctgaaggcacacataggacatgcagggaggtgcatggcaaaagctttgcagagagacctttgtggttaccgtgttgtccgcccggttgagcaacatatagatgctacaatagtaactaatggcatctccagagcattctcaacaggagcgttgcgtcatcctttcaagactatggagaggatatctggtgtggtggtaaatgttgggaaaacaaatccactgcaaacaatggtagatatgaggaagacacgcctccaagttcaatacatggggaaggttcgagatgccagatatccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

10.55

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18090 AT3G18090 AT3G18090 AT3G23780 AT3G23780
fragaria_vesca	FvH4_1g06870 FvH4_1g06870
malus_domestica	MD08G1057300.v1.1 MD15G1040100.v1.1
prunus_persica	Prupe.1G393500_v2.0.a1
pyrus_communis	pycom08g04680 pycom15g03760
rosa_chinensis	RchiOBHm_Chr2g0092681 RchiOBHm_Chr5g0042241 RchiOBHm_Chr5g0042281
rosa_laevigata	RLG00000016333 RLG00000034111 RLG00000034115
rosa_multiflora	Rmu_sc0001132.1_g000021 Rmu_sc0001715.1_g000028 Rmu_sc0017518.1_g000004 Rmu_sc0039596.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038430 Rroxscaffold_2G00148910
rosa_rugosa	Rorug02G0028500 Rorug02G0028600 Rorug02G0028700 Rorug05G0198900
rosa_samantha	Rh2AG074500 Rh2BG075400 Rh2CG077200 Rh2DG073100 Rh5AG283600 Rh5AG284200 Rh5AG285200 Rh5BG289600 Rh5BG290100 Rh5CG320900 Rh5DG298900 Rh5DG299300
rosa_wichuraiana	Rw0G001490 Rw0G001760 Rw2G005860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	40, 250, 347
AluBI	AGCT	3 cut(s)	70, 85, 128
AluI	AGCT	3 cut(s)	70, 85, 128
Alw26I	GTCTC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	175, 216, 358
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	132
BsmI	GAATGC	2 cut(s)	27, 218
Bso31I	GGTCTC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	155
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	107
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
CseI	GACGC	1 cut(s)	227
CviAII	CATG	3 cut(s)	104, 118, 352
CviJI	RGCY	5 cut(s)	52, 62, 70, 85, 128
CviKI_1	RGCY	5 cut(s)	52, 62, 70, 85, 128
EciI	GGCGGA	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	132
Eco32I	GATATC	2 cut(s)	267, 377
Eco57I	CTGAAG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRV	GATATC	2 cut(s)	267, 377
FaeI	CATG	3 cut(s)	107, 121, 355
FaiI	YATR	8 cut(s)	98, 105, 119, 180, 182, 257, 323, 353
FatI	CATG	3 cut(s)	103, 117, 351
FokI	GGATG	1 cut(s)	228
FspBI	CTAG	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	196
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	107, 121, 355
HindIII	AAGCTT	1 cut(s)	126
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	77
Hpy188III	TCNNGA	4 cut(s)	74, 213, 250, 365
HpyAV	CCTTC	2 cut(s)	82, 352
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	5 cut(s)	25, 107, 117, 133, 307
Hsp92II	CATG	3 cut(s)	107, 121, 355
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	7 cut(s)	19, 48, 93, 180, 213, 226, 255
LweI	GCATC	3 cut(s)	175, 216, 358
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	149, 196
MboII	GAAGA	2 cut(s)	52, 340
MluCI	AATT	1 cut(s)	35
MnlI	CCTC	5 cut(s)	42, 105, 255, 318, 347
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	27, 218
NciI	CCSGG	1 cut(s)	167
NlaIII	CATG	3 cut(s)	107, 121, 355
NspI	RCATGY	1 cut(s)	107
PctI	GAATGC	2 cut(s)	27, 218
PspEI	GGTNACC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	6 cut(s)	72, 87, 116, 130, 144, 363
SfaNI	GCATC	3 cut(s)	175, 216, 358
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	364
TasI	AATT	1 cut(s)	35
TscAI	CASTG	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.