Rroxscaffold_1G00038430

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002206
Physical Location & Seq
Forward (+)
55905495 .. 55912701
7207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038430.1

Sequence Viewer

Length: 1575 bp
ATGACAAAGGCTTTGCAGAGAGACCTTTGTGGTTACCGTGTTGTCCGCCCGGTTGAGCAATATATAGATGCTACAATAGTAACTAATGGCATCTCCAGAGCATTCTCAACAGGAGCGTTGTGTCATCCTTTCAAGACTATGGAGAGGATATCTAGTGTGGTGGTAAATGCTGGGAAAACAAATCCACTGCAAACAATGGTAGATATGAGGAAGACACGCCTCCAAGTTCAATACACGGGGAAGGTTCCAGATGCCAGATATCCGCATACTTCTCACTGGGGTAGGGTTTTCTTTATCTCAACCCCAGATGGTGAGAATTGTGGGCTTGTGAAAAATTTGGCTACCACTGCACTGATAAGTACAAACATATTGGAGCCCATATTGCCCGAGTTTTTCTCTTGTGGCATGGAGGAGCTGGTAGATGATACTTCAACATCACTTGATGGGAAGAATAAAGTTTTTCTCAAGGGAGATTGGGTTGGCGTTTGTGAAGATTCCGGTGATTTTGTCATGAGACTAAGGACATTGAGACGCAGGAAAAAGTTGCTACAGCAGATGGAAATCAAAAGAGATGAGCAGCTCTGGGAAGTACGAATATATTCTGATGCTGGAAGGATTCTACGTCCTTTCCTGGTAGTTAAGAATTTGAATAAGATTAAAGCATCCAAGGGAAAAAAACACACGTTCCAAGATCTTCTTGGCAATGGAATAATCGAGCTCATTGGAGCTGAAGAAGAAGAGGATTGCTGTACAGCATGGGACGTCAGGCATCTATTTGTGGAAGACAATGGGGAGTCAGCAGTCAAGTACACACACTGTGAACTGGACCTGTCATTTTTGTTAGGCTTAAGTTGTGGTATCATTCCCTTTTCAAACCATGATCATGCAAGGAGGGTTCTATACCAGCCTCAGAAGCACTCTCAGCAGGTCATTGGTTTTTCTACCACAAATCCTAACCACAGAGTGGTTACTCTGTCTCACCAACTACGCTACCCTCAGAGGCCGCTTTTTTGTAATATGATATCTGATTGCCTTGGCCAACCAGGAAACCCAGTGAGCCATAGCAGAGTTATGTCCAAGCCTGAATACTGTAATGGCCAAAATGCAATTGTTGCATTCAATGTGCACCTAGGATATAACCAAGAAGATTCTATTGTGATGAACCGCACATCTGTGCAACGTGGTATGTTCAAATCTGAGCACATACGGAGCTACAAGGCTGAAGCTGAAAACAAGTTCCCATTGGGAAAAAGGAGGAATCCAGATGACTGTATAAACTTTTGCAAAATACAGAGTAGATTTGGAACTGTTGACAGCCTTGATGATGATGGATTCCCTCGTATAGGTGCATATCTGCTGAGTGGTGATATTATTATTGGGAGGTGCAGTGAATCTGGTACTGATCATAGCATAAAACTGAGGCATACTGAAAGAGGAAATGTTCAGAAGGTTGTACTTTCCTCTAATGACGAGGGAAAGAATTTTGGTGTTGTATCCTTAAGACAGGTTTGTTCTCCTTGTCTTGGAGACAAGTTCTCAAGCATGCATGGGTGTCCTAGGCTTTTTGGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

524

Amino Acids

59.01

Weight (kDa)

8.7

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_3 PF04565 58 - 118 1e-14 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 153 - 214 8.3e-19 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5 PF04567 229 - 276 6.4e-08 RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 285 - 517 8.4e-41 RNA polymerase Rpb2, domain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 765
Acc36I ACCTGC 1 cut(s) 916
AccB7I CCANNNNNTGG 1 cut(s) 964
AciI CCGC 4 cut(s) 46, 263, 1004, 1165
AcoI YGGCCR 2 cut(s) 1036, 1096
AcsI RAATTY 3 cut(s) 334, 643, 1480
AcuI CTGAAG 2 cut(s) 750, 1242
AcyI GRCGYC 1 cut(s) 762
AdeI CACNNNGTG 2 cut(s) 818, 964
AfaI GTAC 6 cut(s) 361, 591, 751, 809, 1399, 1455
AfiI CCNNNNNNNGG 3 cut(s) 964, 1343, 1523
AflII CTTAAG 2 cut(s) 847, 1498
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 7 cut(s) 133, 230, 432, 649, 873, 1120, 1192
AjnI CCWGG 2 cut(s) 630, 1042
AleI CACNNNNGTG 1 cut(s) 1172
AluBI AGCT 6 cut(s) 415, 580, 718, 728, 1212, 1226
AluI AGCT 6 cut(s) 415, 580, 718, 728, 1212, 1226
Alw21I GWGCWC 3 cut(s) 720, 1128, 1203
Alw26I GTCTC 5 cut(s) 15, 508, 523, 981, 1521
Alw44I GTGCAC 1 cut(s) 1124
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 3 cut(s) 1001, 1036, 1096
ApaLI GTGCAC 1 cut(s) 1124
ApeKI GCWGC 1 cut(s) 577
ApoI RAATTY 3 cut(s) 334, 643, 1480
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 598
AspA2I CCTAGG 2 cut(s) 1129, 1556
AspS9I GGNCC 1 cut(s) 826
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 4 cut(s) 323, 512, 971, 1376
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 826
AvrII CCTAGG 2 cut(s) 1129, 1556
BaeGI GKGCMC 1 cut(s) 1128
BalI TGGCCA 2 cut(s) 1038, 1098
BanII GRGCYC 2 cut(s) 378, 720
BbsI GAAGAC 2 cut(s) 218, 789
Bbv12I GWGCWC 3 cut(s) 720, 1128, 1203
BbvI GCAGC 1 cut(s) 589
BccI CCATC 4 cut(s) 302, 437, 550, 1322
BciT130I CCWGG 2 cut(s) 632, 1044
BciVI GTATCC 1 cut(s) 1504
BclI TGATCA 2 cut(s) 880, 1402
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 5 cut(s) 15, 508, 523, 981, 1521
BfaI CTAG 3 cut(s) 153, 1130, 1557
BfmI CTRYAG 1 cut(s) 548
BfrI CTTAAG 2 cut(s) 847, 1498
BfuAI ACCTGC 1 cut(s) 916
BfuI GTATCC 1 cut(s) 1504
BglII AGATCT 1 cut(s) 691
BisI GCNGC 2 cut(s) 578, 1004
BlnI CCTAGG 2 cut(s) 1129, 1556
BlsI GCNGC 2 cut(s) 579, 1005
Bme1390I CCNGG 3 cut(s) 50, 632, 1044
Bme18I GGWCC 1 cut(s) 826
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 826
BmiI GGNNCC 2 cut(s) 246, 375
BmrFI CCNGG 3 cut(s) 50, 632, 1044
BmrI ACTGGG 2 cut(s) 286, 1046
BmsI GCATC 6 cut(s) 58, 99, 241, 595, 671, 778
BmuI ACTGGG 2 cut(s) 286, 1046
BpiI GAAGAC 2 cut(s) 218, 789
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 449, 1522
BpuMI CCSGG 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 4 cut(s) 666, 1033, 1129, 1556
BsaWI WCCGGW 1 cut(s) 497
BsaXI ACNNNNNCTCC 4 cut(s) 462, 492, 1372, 1402
Bsc4I CCNNNNNNNGG 3 cut(s) 964, 1343, 1523
Bse1I ACTGG 3 cut(s) 281, 828, 1052
Bse3DI GCAATG 1 cut(s) 709
Bse8I GATNNNNATC 1 cut(s) 560
BseBI CCWGG 2 cut(s) 632, 1044
BseDI CCNNGG 4 cut(s) 666, 1033, 1129, 1556
BseGI GGATG 2 cut(s) 124, 662
BseJI GATNNNNATC 1 cut(s) 560
BseLI CCNNNNNNNGG 3 cut(s) 964, 1343, 1523
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 6 cut(s) 923, 935, 1010, 1188, 1349, 1409
BseNI ACTGG 3 cut(s) 281, 828, 1052
BseRI GAGGAG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 1128
BseXI GCAGC 1 cut(s) 589
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 2 cut(s) 333, 1405
BshFI GGCC 3 cut(s) 1003, 1038, 1098
BsiHKAI GWGCWC 3 cut(s) 720, 1128, 1203
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 2 cut(s) 50, 498
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 3 cut(s) 964, 1343, 1523
BsmAI GTCTC 5 cut(s) 15, 508, 523, 981, 1521
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 773
BsmI GAATGC 2 cut(s) 101, 1115
BsnI GGCC 3 cut(s) 1003, 1038, 1098
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 386
Bsp1286I GDGCHC 4 cut(s) 378, 720, 1128, 1203
Bsp1407I TGTACA 1 cut(s) 749
Bsp143I GATC 3 cut(s) 691, 880, 1402
BspACI CCGC 4 cut(s) 46, 263, 1004, 1165
BspANI GGCC 3 cut(s) 1003, 1038, 1098
BspCNI CTCAG 6 cut(s) 922, 934, 1009, 1189, 1350, 1410
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 246, 375
BspMI ACCTGC 1 cut(s) 916
BspTI CTTAAG 2 cut(s) 847, 1498
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 709
BsrGI TGTACA 1 cut(s) 749
BsrI ACTGG 3 cut(s) 281, 828, 1052
BssECI CCNNGG 4 cut(s) 666, 1033, 1129, 1556
BssMI GATC 3 cut(s) 691, 880, 1402
BssNI GRCGYC 1 cut(s) 762
BssT1I CCWWGG 4 cut(s) 666, 1033, 1129, 1556
Bst2UI CCWGG 2 cut(s) 632, 1044
Bst4CI ACNGT 5 cut(s) 38, 818, 1091, 1271, 1309
Bst6I CTCTTC 1 cut(s) 732
BstACI GRCGYC 1 cut(s) 762
BstAFI CTTAAG 2 cut(s) 847, 1498
BstAPI GCANNNNNTGC 1 cut(s) 1112
BstAUI TGTACA 1 cut(s) 749
BstC8I GCNNGC 1 cut(s) 1544
BstDEI CTNAG 7 cut(s) 518, 909, 921, 996, 1197, 1358, 1418
BstEII GGTNACC 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 1341
BstF5I GGATG 2 cut(s) 124, 662
BstKTI GATC 3 cut(s) 694, 883, 1405
BstMAI GTCTC 5 cut(s) 15, 508, 523, 981, 1521
BstMBI GATC 3 cut(s) 691, 880, 1402
BstMWI GCNNNNNNNGC 5 cut(s) 347, 382, 913, 922, 1112
BstNI CCWGG 2 cut(s) 632, 1044
BstNSI RCATGY 1 cut(s) 1546
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 3 cut(s) 48, 630, 1042
BstSFI CTRYAG 1 cut(s) 548
BstSLI GKGCMC 1 cut(s) 1128
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 2 cut(s) 218, 789
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
BsuI GTATCC 1 cut(s) 1504
BsuRI GGCC 3 cut(s) 1003, 1038, 1098
BtsCI GGATG 2 cut(s) 124, 662
BtsI GCAGTG 3 cut(s) 185, 345, 1393
BtsIMutI CAGTG 7 cut(s) 185, 274, 345, 350, 814, 1059, 1393
BveI ACCTGC 1 cut(s) 916
Cac8I GCNNGC 1 cut(s) 1544
CciI TCATGA 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 826
CseI GACGC 1 cut(s) 540
Csp6I GTAC 6 cut(s) 360, 590, 750, 808, 1398, 1454
CviAII CATG 7 cut(s) 406, 511, 756, 878, 884, 1543, 1547
CviQI GTAC 6 cut(s) 360, 590, 750, 808, 1398, 1454
DdeI CTNAG 7 cut(s) 518, 909, 921, 996, 1197, 1358, 1418
DpnI GATC 3 cut(s) 693, 882, 1404
DpnII GATC 3 cut(s) 691, 880, 1402
DraIII CACNNNGTG 2 cut(s) 818, 964
EaeI YGGCCR 2 cut(s) 1036, 1096
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 718
Eco130I CCWWGG 4 cut(s) 666, 1033, 1129, 1556
Eco24I GRGCYC 2 cut(s) 378, 720
Eco31I GGTCTC 1 cut(s) 15
Eco32I GATATC 3 cut(s) 150, 260, 1023
Eco47I GGWCC 1 cut(s) 826
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 2 cut(s) 750, 1242
Eco88I CYCGRG 1 cut(s) 386
Eco91I GGTNACC 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 718
EcoNI CCTNNNNNAGG 1 cut(s) 1341
EcoO65I GGTNACC 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 630, 1042
EcoRV GATATC 3 cut(s) 150, 260, 1023
EcoT14I CCWWGG 4 cut(s) 666, 1033, 1129, 1556
EcoT22I ATGCAT 1 cut(s) 1548
EcoT38I GRGCYC 2 cut(s) 378, 720
ErhI CCWWGG 4 cut(s) 666, 1033, 1129, 1556
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 7 cut(s) 409, 514, 759, 881, 887, 1546, 1550
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 1 cut(s) 773
FatI CATG 7 cut(s) 405, 510, 755, 877, 883, 1542, 1546
FbaI TGATCA 2 cut(s) 880, 1402
Fnu4HI GCNGC 2 cut(s) 578, 1004
FokI GGATG 2 cut(s) 111, 649
FriOI GRGCYC 2 cut(s) 378, 720
Fsp4HI GCNGC 2 cut(s) 578, 1004
FspBI CTAG 3 cut(s) 153, 1130, 1557
GluI GCNGC 2 cut(s) 578, 1004
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 3 cut(s) 1003, 1038, 1098
HapII CCGG 2 cut(s) 50, 498
HgaI GACGC 1 cut(s) 540
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 7 cut(s) 409, 514, 759, 881, 887, 1546, 1550
HincII GTYRAC 1 cut(s) 1312
HindII GTYRAC 1 cut(s) 1312
HinfI GANTC 8 cut(s) 494, 616, 794, 1148, 1258, 1332, 1391, 1569
HpaII CCGG 2 cut(s) 50, 498
HphI GGTGA 4 cut(s) 323, 512, 971, 1376
Hpy166II GTNNAC 4 cut(s) 810, 821, 1126, 1312
Hpy188I TCNGA 7 cut(s) 604, 912, 999, 1027, 1198, 1446, 1574
Hpy188III TCNNGA 5 cut(s) 96, 133, 248, 511, 1262
Hpy8I GTNNAC 4 cut(s) 810, 821, 1126, 1312
HpyAV CCTTC 3 cut(s) 235, 606, 1441
HpyCH4III ACNGT 5 cut(s) 38, 818, 1091, 1271, 1309
HpyCH4IV ACGT 4 cut(s) 622, 683, 762, 1180
HpyF10VI GCNNNNNNNGC 5 cut(s) 347, 382, 913, 922, 1112
HpyF3I CTNAG 7 cut(s) 518, 909, 921, 996, 1197, 1358, 1418
HpySE526I ACGT 4 cut(s) 622, 683, 762, 1180
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 7 cut(s) 409, 514, 759, 881, 887, 1546, 1550
Ksp22I TGATCA 2 cut(s) 880, 1402
Kzo9I GATC 3 cut(s) 691, 880, 1402
LmnI GCTCC 5 cut(s) 113, 373, 412, 725, 1209
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 6 cut(s) 58, 99, 241, 595, 671, 778
MaeI CTAG 3 cut(s) 153, 1130, 1557
MaeII ACGT 4 cut(s) 622, 683, 762, 1180
MaeIII GTNAC 3 cut(s) 32, 79, 967
MalI GATC 3 cut(s) 693, 882, 1404
MboI GATC 3 cut(s) 691, 880, 1402
MboII GAAGA 9 cut(s) 223, 460, 503, 686, 743, 746, 749, 794, 1157
MfeI CAATTG 1 cut(s) 1107
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 4 cut(s) 378, 720, 1128, 1203
MlsI TGGCCA 2 cut(s) 1038, 1098
MluCI AATT 5 cut(s) 316, 334, 643, 1107, 1480
MluNI TGGCCA 2 cut(s) 1038, 1098
MlyI GAGTC 1 cut(s) 803
Mox20I TGGCCA 2 cut(s) 1038, 1098
Mph1103I ATGCAT 1 cut(s) 1548
MroXI GAANNNNTTC 1 cut(s) 598
MscI TGGCCA 2 cut(s) 1038, 1098
MseI TTAA 4 cut(s) 639, 657, 848, 1499
MslI CAYNNNNRTG 2 cut(s) 882, 1172
Msp20I TGGCCA 2 cut(s) 1038, 1098
MspCI CTTAAG 2 cut(s) 847, 1498
MspI CCGG 2 cut(s) 50, 498
MspR9I CCNGG 3 cut(s) 50, 632, 1044
MunI CAATTG 1 cut(s) 1107
Mva1269I GAATGC 2 cut(s) 101, 1115
MvaI CCWGG 2 cut(s) 632, 1044
MwoI GCNNNNNNNGC 5 cut(s) 347, 382, 913, 922, 1112
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 691, 880, 1402
NlaIII CATG 7 cut(s) 409, 514, 759, 881, 887, 1546, 1550
NlaIV GGNNCC 2 cut(s) 246, 375
NsiI ATGCAT 1 cut(s) 1548
NspI RCATGY 1 cut(s) 1546
OliI CACNNNNGTG 1 cut(s) 1172
PaeI GCATGC 1 cut(s) 1546
PagI TCATGA 1 cut(s) 510
PctI GAATGC 2 cut(s) 101, 1115
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 6 cut(s) 494, 616, 1148, 1258, 1332, 1391
PflMI CCANNNNNTGG 1 cut(s) 964
PkrI GCNGC 2 cut(s) 579, 1005
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 2 cut(s) 630, 1042
PspEI GGTNACC 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 2 cut(s) 630, 1042
PspN4I GGNNCC 2 cut(s) 246, 375
PspPI GGNCC 1 cut(s) 826
PsuI RGATCY 1 cut(s) 691
RsaI GTAC 6 cut(s) 361, 591, 751, 809, 1399, 1455
RsaNI GTAC 6 cut(s) 360, 590, 750, 808, 1398, 1454
RseI CAYNNNNRTG 2 cut(s) 882, 1172
SacI GAGCTC 1 cut(s) 720
SaqAI TTAA 4 cut(s) 639, 657, 848, 1499
SatI GCNGC 2 cut(s) 578, 1004
Sau3AI GATC 3 cut(s) 691, 880, 1402
Sau96I GGNCC 1 cut(s) 826
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 3 cut(s) 50, 632, 1044
SduI GDGCHC 4 cut(s) 378, 720, 1128, 1203
SfaNI GCATC 6 cut(s) 58, 99, 241, 595, 671, 778
SfcI CTRYAG 1 cut(s) 548
SinI GGWCC 1 cut(s) 826
SmiMI CAYNNNNRTG 2 cut(s) 882, 1172
SmlI CTYRAG 4 cut(s) 464, 847, 1498, 1537
SmoI CTYRAG 4 cut(s) 464, 847, 1498, 1537
SphI GCATGC 1 cut(s) 1546
Sse9I AATT 5 cut(s) 316, 334, 643, 1107, 1480
SsiI CCGC 4 cut(s) 46, 263, 1004, 1165
SspMI CTAG 3 cut(s) 153, 1130, 1557
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 3 cut(s) 48, 630, 1042
StyI CCWWGG 4 cut(s) 666, 1033, 1129, 1556
TaaI ACNGT 5 cut(s) 38, 818, 1091, 1271, 1309
TaiI ACGT 4 cut(s) 625, 686, 765, 1183
TaqI TCGA 1 cut(s) 714
TasI AATT 5 cut(s) 316, 334, 643, 1107, 1480
TatI WGTACW 4 cut(s) 359, 749, 807, 1453
TauI GCSGC 1 cut(s) 1006
TfiI GAWTC 6 cut(s) 494, 616, 1148, 1258, 1332, 1391
Tru1I TTAA 4 cut(s) 639, 657, 848, 1499
Tru9I TTAA 4 cut(s) 639, 657, 848, 1499
TscAI CASTG 7 cut(s) 192, 281, 352, 357, 821, 1059, 1393
TseI GCWGC 1 cut(s) 577
TspDTI ATGAA 1 cut(s) 1175
TspGWI ACGGA 1 cut(s) 1222
TspRI CASTG 7 cut(s) 192, 281, 352, 357, 821, 1059, 1393
Van91I CCANNNNNTGG 1 cut(s) 964
Vha464I CTTAAG 2 cut(s) 847, 1498
VneI GTGCAC 1 cut(s) 1124
VpaK11BI GGWCC 1 cut(s) 826
XagI CCTNNNNNAGG 1 cut(s) 1341
XapI RAATTY 3 cut(s) 334, 643, 1480
XceI RCATGY 1 cut(s) 1546
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmaJI CCTAGG 2 cut(s) 1129, 1556
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 3 cut(s) 153, 1130, 1557
ZraI GACGTC 1 cut(s) 763
Zsp2I ATGCAT 1 cut(s) 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.