RLG00000034115

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002206
Physical Location & Seq
Reverse (-)
36953439 .. 36959988
6550 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034115

Sequence Viewer

Length: 3492 bp
ATGAGCTGGTTATCTACTGTAGGAAGAAAAAAGTTTTCAAATCCAATTGGGGCTTCATCGGTTGCCAAGGGAGATATTGGTATGAGTAGTAAGGGGGACAGCTTTTCCAATTGGGTTGACATGGATTTTGATGATGATAATGAATCTAAGCTTTTTTTGAAGGATTTCTGTAAGGAGGCATCAGTTTCATTCTTCAACCAGTGTGGCCTCATTAGTCACCAAATAAACTCGTACAATGACTTCATTAAAAATGGTATACAAAGAGTCTTTGATAGTTTTGATGAGATTATAGTTGAGCCTGGGTATGACCCATCAAAGAAGGGGAATGCAGAATGGCGATATGCTTCCATCAGGTTTGGGAAGGTTACCCTCATTCGACCAAGTTTTTGGGGTGGTGCTGTGAATGATAAGGAGTATAATATGCTACCTAGGCATGCTCGGCTTCAAAATATGACAGACTCAGCCAAGATCAAAGTGAACGTTACTGTTGAGGTATATACTCAAAATCTTGTCAGAAGTGAAAAGTTTAAAACTGGGAAAGAACAATGTCTTGACAAGCAGATTGTGACTACAGAGAGTAGTGATGTCTTTATTGGTAAGCTCCCAGTGATGGTGGCTGAATTTGACCATGGAGGTTATTTTATAATCAAGGGTGCAGAGAAGACCTTTATTGCACAAGAGCAGAGCTGTCTGAAGAGACTTCTAATTACAAATAATCAGGGGATCACAGTAGCATATAGGTCTGAGGTAAAGCGGCATAGACTACTAATAAGATTATCAGGGATTTCTCAACTTGAAAACATTGAAGGAGTAGAGAAAGTTTTGTCAGTGTACTTTATGTCAGCAGAAATCCCACTCTGGATTTGGTTTTTCGCCCTTGGGGTTTCTTCGGACAATGAAGTTACAGATCTGATTGATTATGGCAAAGAAGATGAAAGCATTTCAAGCATTCTAGTTGCCTCAATTCGTGATGCTGACCAACAAAAAGATAACTTCCGGAGAGGGAAGAATGCTCTCAGATATGTTGAAGAGATGATAAAGAATACCACGTTTCCTCCTCGGGAAAGCATTGAAGAATGCATCAGCATGTATCTGTTCCCCAATCTCAGGGGCATGAAGCAAAAGGCTCGAGGCCACAGGAAATGTGACAACAGAGAAGAATTGAAGAACAAGAGGTTTCACTTGGCTGGTGAGCTTCTAGAGCGAGAGCTGAAGGCACACGTAGGACATGCAGGAAGGCGCATGGCAAAGGCTTTGCAGAGAGACCTTTGTGGTGACTGTGTTGTCCGCCTGGTTGAGCAATATCTAGATGCTACAATAGTAACTAATGGCATCTCCAGAGCATTCTCAACTGGAGCGAGGTGTCATCCTTTCAAGAGGATGGAGAGGATGTCTGGTGTGGTGGTAAATGTTGGGAAAACAAATCCACTGCAAACAATGGTAGATATGAGGAAGACACGCCTCCAAGTTGAATACACGGGGAAGGTCGGAGATGCCAGATATCCGTATCCTTCTCACTGGGGTAGTGTTTGCTTTATCTCAACCCCAGATGGTGAGAATTGTGGGCTTGTGAAAAATTTGGCTACCACTGCACTGGTAAGTACAAACATATTGGAGCCCATATTGCCCGAGTTTTTCTCTTGTGGCATGGAGGAGCTGGTAGATGATACTTCAACATCACTTCATGGGAAGAATAAAGTTTTTCTCAATGGGGATTGGGTTGGCGTTTGTGAATATTCCCATGATTTTGTCACGAAACTAAGGACATTGAGATGCAGGAAAAAGTTGCTACATCAGGTGGAAATTAAAAGAGATGAGCAGCTCCTGAAAGTACGCATATATTCTGATGCTGGAAGGATTCTACATCCTTTCCTGGTAGTTAAGAATTTGAATAAGATTAAAGAATCAAAAGGGAAAAAACACACGTTCCAGGATCTTCTTGGCAATGGAATAATCGAGCTCATTGGAGCTGAAGAGGAAGAGGATTTCTGTACAGCATGGGACGTCAAGCATCTATTTATGGAGGGGAAGTCAGCAGTCAAGTACACACACTGTGAACTGGACCTGTCATTTTTGTTAGGCTTAAGTTCTGGTATCATTCCTTTTTCAAACCATGATCATGCAAGTAGGGTTCTATACCAGTCTCAGAAGCACTCTCAGCAGGCCATTGGTTTTTCTGCCACAAATCCTAACCACAGAGTGGATACTCTGTCTCACCAACTACACTACCCTCAGAGGCCGCTTTTTCGTACTATGATATCTGATTGCCTTGGCCAACCAGGAAACCCAGTGAGCCATCAGAGAGTTATGCCCAAGCCTGAATACTTTAATGGCCAAAATGCAATTGTTGCGGTGAATGTGCACCTAGGATATAACCAAGAAGATTCTATTGTGATGAACCACGCATCTGTGCAACGTGGTATGTTCAAATCTGAGCACATACGGAGCTACAAGGCTGAAGTTGAAAACAAGTTCTCATTGGGAAAAAGGAGGAAGCCAGATGACTGTATAAATTTTGGCAAAATACAGAGTAAATTTGGAAGTGTTGACAGCCTTGATGATGATGGATTCCCCTGTATAGGTGCATATCTGCAGAGTGGTGATACTATTATTGGGAGGTGCAGTGAATCTGGTACTGATCATAGCATCAAACTGAGGCATACTGAAAGAGGAAAGGTTCAGAAGGTTGTACTTTCCTCTAATAAAGAGGGAAGAATTTTGGTTCGTTCTCCTTGTCCTGGAGACAAGTTCTCAAGCATGCACGGGCAGAAGGGTGTCCTAGGCTTTTTGGAGTCTGAAGAGAACTTCCCCTTCACAATACAGGGGATAGTTCCAGATATTGTAATTAATCCACATGCATTTCCTTCACGACAAGCTCCTGGTCAACTCCTAGAGGCTGCTTTAGGGAAGGGGATTGCCTGTGGTGGCTCAATGAGATATGCAACTCCTTTCTCTACTCCCTCTGTTGATGACATCACAGATCAGCTTCATAGAGCTGGATTTCAAAGATGGGGAAATGAGAGAGTATACAGTGGTCAAACTGGTCAAATGGTTCACCAACTGATATTTATGGGCCCAACATTCTATCAACGTCTCATTCACATTTCTGAAGACAAAATGAAGTTCAGGAACACTGGGCCAGTTCACCCTCTCACCAGGCAGCCGGTGGCAGACAGGAAGAGATTTGGTGGGGTAAAGTTTGGTGAGATGGAGCGCGACTGCCTTATAGCCCATGGAGCATCAGCAAACTTACATGAACGCCTTTTCACTCTTAGTGACTCCTCCGAAATGCATGCTTGCCTGAAATGCAAAAATGCGGCTAATGTGATAGATGGAACAGTTGATGGCAGTAGAATCAGGGGTCCATATTGCCGGGTCTGTAAGTCTGTTGATGACATTGTCAGGTTGAATGTTCCATATGGGGCCAAGTTATTGTGCCAGGAACTTTTCAGCATGGGCATAAGTCTCAAGTTTGAGACCAGGCTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1164

Amino Acids

130.98

Weight (kDa)

8.74

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_1 PF04563 69 - 423 4e-23 RNA polymerase beta subunit
RNA_pol_Rpb2_3 PF04565 473 - 532 3.2e-15 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 567 - 628 9.9e-17 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5 PF04567 643 - 688 7.7e-07 RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 697 - 1061 4.5e-100 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 1063 - 1159 2.7e-25 RNA polymerase Rpb2, domain 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AasI GACNNNNNNGTC 1 cut(s) 1283
AatII GACGTC 1 cut(s) 2007
AccB7I CCANNNNNTGG 1 cut(s) 2200
AccI GTMKAC 2 cut(s) 256, 3027
AccII CGCG 1 cut(s) 3216
AccIII TCCGGA 1 cut(s) 996
AciI CCGC 5 cut(s) 754, 1288, 2240, 2351, 3317
AclI AACGTT 1 cut(s) 480
AclWI GGATC 2 cut(s) 731, 1941
AcoI YGGCCR 2 cut(s) 2272, 2332
AcsI RAATTY 6 cut(s) 620, 1576, 1885, 2512, 2534, 2715
AcuI CTGAAG 6 cut(s) 713, 1232, 1992, 2478, 2817, 3129
AcyI GRCGYC 1 cut(s) 2004
AdeI CACNNNGTG 2 cut(s) 2054, 2200
AfaI GTAC 9 cut(s) 233, 833, 1603, 1833, 1993, 2045, 2251, 2635, 2691
AfiI CCNNNNNNNGG 5 cut(s) 610, 1107, 2200, 2579, 2738
AflII CTTAAG 1 cut(s) 2083
AflIII ACRYGT 2 cut(s) 1219, 1923
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
Alw21I GWGCWC 3 cut(s) 1962, 2364, 2439
Alw26I GTCTC 8 cut(s) 691, 1257, 2148, 2217, 2736, 3098, 3470, 3470
Alw44I GTGCAC 1 cut(s) 2360
AlwI GGATC 2 cut(s) 731, 1941
AlwNI CAGNNNCTG 2 cut(s) 1825, 3486
Ama87I CYCGRG 3 cut(s) 1059, 1128, 1628
Aor13HI TCCGGA 1 cut(s) 996
AoxI GGCC 9 cut(s) 205, 1132, 2163, 2237, 2272, 2332, 3073, 3137, 3423
ApaI GGGCCC 1 cut(s) 3077
ApaLI GTGCAC 1 cut(s) 2360
ApeKI GCWGC 3 cut(s) 1819, 2897, 3160
ApoI RAATTY 6 cut(s) 620, 1576, 1885, 2512, 2534, 2715
ArsI GACNNNNNNTTYG 4 cut(s) 110, 142, 369, 401
AseI ATTAAT 1 cut(s) 2847
Asp700I GAANNNNTTC 1 cut(s) 164
AspA2I CCTAGG 3 cut(s) 428, 2365, 2779
AspLEI GCGC 2 cut(s) 1242, 3216
AspS9I GGNCC 6 cut(s) 2062, 3073, 3074, 3137, 3362, 3423
AsuC2I CCSGG 1 cut(s) 3374
AvaI CYCGRG 3 cut(s) 1059, 1128, 1628
AvaII GGWCC 2 cut(s) 2062, 3362
AvrII CCTAGG 3 cut(s) 428, 2365, 2779
BaeGI GKGCMC 2 cut(s) 2364, 3077
BalI TGGCCA 2 cut(s) 2274, 2334
BanII GRGCYC 3 cut(s) 1620, 1962, 3077
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BbsI GAAGAC 3 cut(s) 668, 1460, 3117
Bbv12I GWGCWC 3 cut(s) 1962, 2364, 2439
BbvI GCAGC 3 cut(s) 1831, 2884, 3172
BcgI CGANNNNNNTGC 4 cut(s) 1109, 1143, 3275, 3309
BciVI GTATCC 2 cut(s) 1518, 2197
BclI TGATCA 2 cut(s) 2116, 2638
BcnI CCSGG 1 cut(s) 3374
BcoDI GTCTC 8 cut(s) 691, 1257, 2148, 2217, 2736, 3098, 3470, 3470
BfaI CTAG 7 cut(s) 429, 953, 1199, 1307, 2366, 2780, 2891
BfmI CTRYAG 3 cut(s) 18, 570, 2591
BfrI CTTAAG 1 cut(s) 2083
BfuI GTATCC 2 cut(s) 1518, 2197
BglII AGATCT 1 cut(s) 907
BisI GCNGC 6 cut(s) 755, 1820, 2240, 2898, 3161, 3318
BlnI CCTAGG 3 cut(s) 428, 2365, 2779
BlsI GCNGC 6 cut(s) 756, 1821, 2241, 2899, 3162, 3319
Bme18I GGWCC 2 cut(s) 2062, 3362
BmeT110I CYCGRG 3 cut(s) 1059, 1128, 1628
BmgT120I GGNCC 6 cut(s) 2062, 3073, 3074, 3137, 3362, 3423
BmiI GGNNCC 4 cut(s) 1617, 3075, 3363, 3424
BmrI ACTGGG 5 cut(s) 543, 599, 1528, 2282, 3144
BmuI ACTGGG 5 cut(s) 543, 599, 1528, 2282, 3144
BpiI GAAGAC 3 cut(s) 668, 1460, 3117
BplI GAGNNNNNCTC 2 cut(s) 1622, 1654
BpmI CTGGAG 3 cut(s) 1321, 1374, 2760
BpuEI CTTGAG 2 cut(s) 2737, 3452
BpuMI CCSGG 1 cut(s) 3374
BsaAI YACGTR 1 cut(s) 1222
BsaHI GRCGYC 1 cut(s) 2004
BsaI GGTCTC 2 cut(s) 1257, 3470
BsaWI WCCGGW 1 cut(s) 996
BsaXI ACNNNNNCTCC 8 cut(s) 1039, 1069, 1376, 1406, 2015, 2045, 2608, 2638
Bsc4I CCNNNNNNNGG 5 cut(s) 610, 1107, 2200, 2579, 2738
Bse118I RCCGGY 1 cut(s) 3163
Bse3DI GCAATG 1 cut(s) 1951
BseAI TCCGGA 1 cut(s) 996
BseGI GGATG 4 cut(s) 1366, 1386, 1395, 1864
BseLI CCNNNNNNNGG 5 cut(s) 610, 1107, 2200, 2579, 2738
BseMI GCAATG 1 cut(s) 1951
BseMII CTCAG 9 cut(s) 474, 735, 1030, 1120, 2159, 2171, 2246, 2424, 2645
BseRI GAGGAG 3 cut(s) 1047, 1667, 3271
BseSI GKGCMC 2 cut(s) 2364, 3077
BseXI GCAGC 3 cut(s) 1831, 2884, 3172
BsgI GTGCAG 3 cut(s) 675, 1575, 2641
Bsh1236I CGCG 1 cut(s) 3216
BshFI GGCC 9 cut(s) 207, 1134, 2165, 2239, 2274, 2334, 3075, 3139, 3425
BsiHKAI GWGCWC 3 cut(s) 1962, 2364, 2439
BsiHKCI CYCGRG 3 cut(s) 1059, 1128, 1628
BsiSI CCGG 3 cut(s) 997, 3164, 3373
BslFI GGGAC 2 cut(s) 110, 2015
BslI CCNNNNNNNGG 5 cut(s) 610, 1107, 2200, 2579, 2738
BsmAI GTCTC 8 cut(s) 691, 1257, 2148, 2217, 2736, 3098, 3470, 3470
BsmBI CGTCTC 1 cut(s) 3098
BsmFI GGGAC 2 cut(s) 110, 2015
BsmI GAATGC 5 cut(s) 331, 948, 1015, 1082, 1343
BsnI GGCC 9 cut(s) 207, 1134, 2165, 2239, 2274, 2334, 3075, 3139, 3425
Bso31I GGTCTC 2 cut(s) 1257, 3470
BsoBI CYCGRG 3 cut(s) 1059, 1128, 1628
Bsp120I GGGCCC 1 cut(s) 3073
Bsp1286I GDGCHC 5 cut(s) 1620, 1962, 2364, 2439, 3077
Bsp13I TCCGGA 1 cut(s) 996
Bsp1407I TGTACA 1 cut(s) 1991
Bsp143I GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
Bsp19I CCATGG 2 cut(s) 628, 3232
BspACI CCGC 5 cut(s) 754, 1288, 2240, 2351, 3317
BspANI GGCC 9 cut(s) 207, 1134, 2165, 2239, 2274, 2334, 3075, 3139, 3425
BspCNI CTCAG 9 cut(s) 473, 736, 1029, 1119, 2158, 2170, 2245, 2425, 2646
BspEI TCCGGA 1 cut(s) 996
BspFNI CGCG 1 cut(s) 3216
BspLI GGNNCC 4 cut(s) 1617, 3075, 3363, 3424
BspMAI CTGCAG 1 cut(s) 2595
BspPI GGATC 2 cut(s) 731, 1941
BspTI CTTAAG 1 cut(s) 2083
BspTNI GGTCTC 2 cut(s) 1257, 3470
BsrDI GCAATG 1 cut(s) 1951
BsrFI RCCGGY 1 cut(s) 3163
BsrGI TGTACA 1 cut(s) 1991
BssAI RCCGGY 1 cut(s) 3163
BssMI GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
BssNAI GTATAC 2 cut(s) 257, 3028
BssNI GRCGYC 1 cut(s) 2004
BssT1I CCWWGG 8 cut(s) 66, 428, 628, 877, 2269, 2365, 2779, 3232
Bst1107I GTATAC 2 cut(s) 257, 3028
Bst4CI ACNGT 8 cut(s) 19, 487, 730, 1280, 2054, 2507, 3032, 3340
Bst6I CTCTTC 6 cut(s) 689, 1023, 1968, 1974, 2793, 3173
BstACI GRCGYC 1 cut(s) 2004
BstAFI CTTAAG 1 cut(s) 2083
BstAPI GCANNNNNTGC 1 cut(s) 2348
BstAUI TGTACA 1 cut(s) 1991
BstBAI YACGTR 1 cut(s) 1222
BstC8I GCNNGC 5 cut(s) 435, 2163, 2759, 3294, 3298
BstDSI CCRYGG 2 cut(s) 628, 3232
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 4 cut(s) 1366, 1386, 1395, 1864
BstFNI CGCG 1 cut(s) 3216
BstHHI GCGC 2 cut(s) 1242, 3216
BstKTI GATC 7 cut(s) 471, 726, 910, 1936, 2119, 2641, 2983
BstMAI GTCTC 8 cut(s) 691, 1257, 2148, 2217, 2736, 3098, 3470, 3470
BstMBI GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
BstNSI RCATGY 6 cut(s) 437, 1090, 1232, 2761, 2858, 3296
BstPI GGTNACC 1 cut(s) 364
BstSFI CTRYAG 3 cut(s) 18, 570, 2591
BstSLI GKGCMC 2 cut(s) 2364, 3077
BstUI CGCG 1 cut(s) 3216
BstV1I GCAGC 3 cut(s) 1831, 2884, 3172
BstV2I GAAGAC 3 cut(s) 668, 1460, 3117
BstX2I RGATCY 2 cut(s) 907, 1933
BstXI CCANNNNNNTGG 2 cut(s) 387, 1594
BstYI RGATCY 2 cut(s) 907, 1933
BstZ17I GTATAC 2 cut(s) 257, 3028
BsuI GTATCC 2 cut(s) 1518, 2197
BsuRI GGCC 9 cut(s) 207, 1134, 2165, 2239, 2274, 2334, 3075, 3139, 3425
BtgI CCRYGG 2 cut(s) 628, 3232
BtsCI GGATG 4 cut(s) 1366, 1386, 1395, 1864
BtsI GCAGTG 3 cut(s) 1427, 1587, 2629
Cac8I GCNNGC 5 cut(s) 435, 2163, 2759, 3294, 3298
CaiI CAGNNNCTG 2 cut(s) 1825, 3486
CfoI GCGC 2 cut(s) 1242, 3216
Cfr10I RCCGGY 1 cut(s) 3163
Cfr13I GGNCC 6 cut(s) 2062, 3073, 3074, 3137, 3362, 3423
Csp6I GTAC 9 cut(s) 232, 832, 1602, 1832, 1992, 2044, 2250, 2634, 2690
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviQI GTAC 9 cut(s) 232, 832, 1602, 1832, 1992, 2044, 2250, 2634, 2690
DpnI GATC 7 cut(s) 470, 725, 909, 1935, 2118, 2640, 2982
DpnII GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
DraI TTTAAA 1 cut(s) 529
DraIII CACNNNGTG 2 cut(s) 2054, 2200
DrdI GACNNNNNNGTC 1 cut(s) 1283
DseDI GACNNNNNNGTC 1 cut(s) 1283
EaeI YGGCCR 2 cut(s) 2272, 2332
Eam1104I CTCTTC 6 cut(s) 689, 1023, 1968, 1974, 2793, 3173
EarI CTCTTC 6 cut(s) 689, 1023, 1968, 1974, 2793, 3173
EciI GGCGGA 1 cut(s) 1277
Ecl136II GAGCTC 1 cut(s) 1960
Eco130I CCWWGG 8 cut(s) 66, 428, 628, 877, 2269, 2365, 2779, 3232
Eco24I GRGCYC 3 cut(s) 1620, 1962, 3077
Eco31I GGTCTC 2 cut(s) 1257, 3470
Eco32I GATATC 2 cut(s) 1502, 2259
Eco47I GGWCC 2 cut(s) 2062, 3362
Eco53kI GAGCTC 1 cut(s) 1960
Eco57I CTGAAG 6 cut(s) 713, 1232, 1992, 2478, 2817, 3129
Eco88I CYCGRG 3 cut(s) 1059, 1128, 1628
Eco91I GGTNACC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 1960
EcoO65I GGTNACC 1 cut(s) 364
EcoRV GATATC 2 cut(s) 1502, 2259
EcoT14I CCWWGG 8 cut(s) 66, 428, 628, 877, 2269, 2365, 2779, 3232
EcoT22I ATGCAT 3 cut(s) 1082, 2860, 3294
EcoT38I GRGCYC 3 cut(s) 1620, 1962, 3077
ErhI CCWWGG 8 cut(s) 66, 428, 628, 877, 2269, 2365, 2779, 3232
Esp3I CGTCTC 1 cut(s) 3098
FaqI GGGAC 2 cut(s) 110, 2015
FauNDI CATATG 1 cut(s) 3418
FbaI TGATCA 2 cut(s) 2116, 2638
FblI GTMKAC 2 cut(s) 256, 3027
Fnu4HI GCNGC 6 cut(s) 755, 1820, 2240, 2898, 3161, 3318
FokI GGATG 4 cut(s) 1353, 1393, 1402, 1851
FriOI GRGCYC 3 cut(s) 1620, 1962, 3077
Fsp4HI GCNGC 6 cut(s) 755, 1820, 2240, 2898, 3161, 3318
FspBI CTAG 7 cut(s) 429, 953, 1199, 1307, 2366, 2780, 2891
GlaI GCGC 2 cut(s) 1241, 3215
GluI GCNGC 6 cut(s) 755, 1820, 2240, 2898, 3161, 3318
GsuI CTGGAG 3 cut(s) 1321, 1374, 2760
HaeIII GGCC 9 cut(s) 207, 1134, 2165, 2239, 2274, 2334, 3075, 3139, 3425
HapII CCGG 3 cut(s) 997, 3164, 3373
HhaI GCGC 2 cut(s) 1242, 3216
Hin1I GRCGYC 1 cut(s) 2004
Hin6I GCGC 2 cut(s) 1240, 3214
HinP1I GCGC 2 cut(s) 1240, 3214
HincII GTYRAC 3 cut(s) 118, 2548, 2885
HindII GTYRAC 3 cut(s) 118, 2548, 2885
HindIII AAGCTT 1 cut(s) 149
HpaII CCGG 3 cut(s) 997, 3164, 3373
HpyCH4III ACNGT 8 cut(s) 19, 487, 730, 1280, 2054, 2507, 3032, 3340
HpyCH4IV ACGT 7 cut(s) 480, 1049, 1221, 1925, 2004, 2416, 3091
HpySE526I ACGT 7 cut(s) 480, 1049, 1221, 1925, 2004, 2416, 3091
Hsp92I GRCGYC 1 cut(s) 2004
HspAI GCGC 2 cut(s) 1240, 3214
Kpn2I TCCGGA 1 cut(s) 996
Ksp22I TGATCA 2 cut(s) 2116, 2638
Kzo9I GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
Lsp1109I GCAGC 3 cut(s) 1831, 2884, 3172
MaeI CTAG 7 cut(s) 429, 953, 1199, 1307, 2366, 2780, 2891
MaeII ACGT 7 cut(s) 480, 1049, 1221, 1925, 2004, 2416, 3091
MalI GATC 7 cut(s) 470, 725, 909, 1935, 2118, 2640, 2982
MboI GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
MfeI CAATTG 3 cut(s) 45, 109, 2343
MflI RGATCY 2 cut(s) 907, 1933
MhlI GDGCHC 5 cut(s) 1620, 1962, 2364, 2439, 3077
MlsI TGGCCA 2 cut(s) 2274, 2334
MluNI TGGCCA 2 cut(s) 2274, 2334
MlyI GAGTC 4 cut(s) 273, 452, 2801, 3272
MmeI TCCRAC 1 cut(s) 1468
Mox20I TGGCCA 2 cut(s) 2274, 2334
Mph1103I ATGCAT 3 cut(s) 1082, 2860, 3294
MroI TCCGGA 1 cut(s) 996
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 2 cut(s) 2274, 2334
MseI TTAA 8 cut(s) 246, 528, 1806, 1881, 1899, 2084, 2328, 2847
MslI CAYNNNNRTG 3 cut(s) 1085, 1771, 2118
Msp20I TGGCCA 2 cut(s) 2274, 2334
MspCI CTTAAG 1 cut(s) 2083
MspI CCGG 3 cut(s) 997, 3164, 3373
MunI CAATTG 3 cut(s) 45, 109, 2343
Mva1269I GAATGC 5 cut(s) 331, 948, 1015, 1082, 1343
MvnI CGCG 1 cut(s) 3216
NciI CCSGG 1 cut(s) 3374
NcoI CCATGG 2 cut(s) 628, 3232
NdeI CATATG 1 cut(s) 3418
NdeII GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
NlaIV GGNNCC 4 cut(s) 1617, 3075, 3363, 3424
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 6 cut(s) 215, 565, 1145, 1274, 1750, 3275
NsiI ATGCAT 3 cut(s) 1082, 2860, 3294
NspI RCATGY 6 cut(s) 437, 1090, 1232, 2761, 2858, 3296
PaeI GCATGC 3 cut(s) 437, 2761, 3296
PaeR7I CTCGAG 1 cut(s) 1128
PctI GAATGC 5 cut(s) 331, 948, 1015, 1082, 1343
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 7 cut(s) 143, 1858, 1904, 2384, 2568, 2627, 3354
PflFI GACNNNGTC 1 cut(s) 3398
PflMI CCANNNNNTGG 1 cut(s) 2200
PfoI TCCNGGA 2 cut(s) 1929, 2737
PkrI GCNGC 6 cut(s) 756, 1821, 2241, 2899, 3162, 3319
PleI GAGTC 4 cut(s) 272, 452, 2800, 3272
PpsI GAGTC 4 cut(s) 272, 452, 2800, 3272
Ppu21I YACGTR 1 cut(s) 1222
PshBI ATTAAT 1 cut(s) 2847
PsiI TTATAA 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 1962
Psp1406I AACGTT 1 cut(s) 480
PspEI GGTNACC 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 1617, 3075, 3363, 3424
PspOMI GGGCCC 1 cut(s) 3073
PspPI GGNCC 6 cut(s) 2062, 3073, 3074, 3137, 3362, 3423
PspXI VCTCGAGB 1 cut(s) 1128
PstI CTGCAG 1 cut(s) 2595
PstNI CAGNNNCTG 2 cut(s) 1825, 3486
PsuI RGATCY 2 cut(s) 907, 1933
PsyI GACNNNGTC 1 cut(s) 3398
RsaI GTAC 9 cut(s) 233, 833, 1603, 1833, 1993, 2045, 2251, 2635, 2691
RsaNI GTAC 9 cut(s) 232, 832, 1602, 1832, 1992, 2044, 2250, 2634, 2690
RseI CAYNNNNRTG 3 cut(s) 1085, 1771, 2118
SacI GAGCTC 1 cut(s) 1962
SaqAI TTAA 8 cut(s) 246, 528, 1806, 1881, 1899, 2084, 2328, 2847
SatI GCNGC 6 cut(s) 755, 1820, 2240, 2898, 3161, 3318
Sau3AI GATC 7 cut(s) 468, 723, 907, 1933, 2116, 2638, 2980
Sau96I GGNCC 6 cut(s) 2062, 3073, 3074, 3137, 3362, 3423
SchI GAGTC 4 cut(s) 273, 452, 2801, 3272
SduI GDGCHC 5 cut(s) 1620, 1962, 2364, 2439, 3077
SfcI CTRYAG 3 cut(s) 18, 570, 2591
Sfr274I CTCGAG 1 cut(s) 1128
SinI GGWCC 2 cut(s) 2062, 3362
SlaI CTCGAG 1 cut(s) 1128
SmiMI CAYNNNNRTG 3 cut(s) 1085, 1771, 2118
SmlI CTYRAG 4 cut(s) 1128, 2083, 2752, 3467
SmoI CTYRAG 4 cut(s) 1128, 2083, 2752, 3467
SphI GCATGC 3 cut(s) 437, 2761, 3296
SsiI CCGC 5 cut(s) 754, 1288, 2240, 2351, 3317
SspI AATATT 1 cut(s) 1736
SspMI CTAG 7 cut(s) 429, 953, 1199, 1307, 2366, 2780, 2891
SstI GAGCTC 1 cut(s) 1962
StyI CCWWGG 8 cut(s) 66, 428, 628, 877, 2269, 2365, 2779, 3232
TaaI ACNGT 8 cut(s) 19, 487, 730, 1280, 2054, 2507, 3032, 3340
TaiI ACGT 7 cut(s) 483, 1052, 1224, 1928, 2007, 2419, 3094
TaqI TCGA 3 cut(s) 376, 1129, 1956
TatI WGTACW 5 cut(s) 831, 1601, 1991, 2043, 2689
TauI GCSGC 3 cut(s) 757, 2242, 3320
TfiI GAWTC 7 cut(s) 143, 1858, 1904, 2384, 2568, 2627, 3354
Tru1I TTAA 8 cut(s) 246, 528, 1806, 1881, 1899, 2084, 2328, 2847
Tru9I TTAA 8 cut(s) 246, 528, 1806, 1881, 1899, 2084, 2328, 2847
TseFI GTSAC 6 cut(s) 215, 565, 1145, 1274, 1750, 3275
TseI GCWGC 3 cut(s) 1819, 2897, 3160
Tsp45I GTSAC 6 cut(s) 215, 565, 1145, 1274, 1750, 3275
TspGWI ACGGA 2 cut(s) 1494, 2458
Tth111I GACNNNGTC 1 cut(s) 3398
Van91I CCANNNNNTGG 1 cut(s) 2200
Vha464I CTTAAG 1 cut(s) 2083
VneI GTGCAC 1 cut(s) 2360
VpaK11BI GGWCC 2 cut(s) 2062, 3362
VspI ATTAAT 1 cut(s) 2847
XapI RAATTY 6 cut(s) 620, 1576, 1885, 2512, 2534, 2715
XbaI TCTAGA 2 cut(s) 1198, 1306
XceI RCATGY 6 cut(s) 437, 1090, 1232, 2761, 2858, 3296
XcmI CCANNNNNNNNNTGG 3 cut(s) 861, 1937, 3163
XhoI CTCGAG 1 cut(s) 1128
XmaJI CCTAGG 3 cut(s) 428, 2365, 2779
XmiI GTMKAC 2 cut(s) 256, 3027
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 7 cut(s) 429, 953, 1199, 1307, 2366, 2780, 2891
ZraI GACGTC 1 cut(s) 2005
Zsp2I ATGCAT 3 cut(s) 1082, 2860, 3294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.