Rh5BG290100

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002206
Physical Location & Seq
Reverse (-)
36836715 .. 36848733
12019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG290100.1

Sequence Viewer

Length: 4548 bp
ATGATAAAGAATACCGCGTTTCCTCCTCGGGAAAGCATTGAAGAATGCATCAGCATGTATCTGTTCCCCAATCTCAGGGGCTTGAAGCAAAAGGCTCGGTTTCTTGGCTATATGGTGAAGTCTCTTTTACAGACCTTCAGAGGCCACAGGAAATGTGACAACAGAGAAGAATTGAAGAACAAGAGGTTTCACTTGGCTGGTGAGCTTCTAGAGCGAGAGCTGAAGGCACACGTAGGACATGCAGGAAGGCGCATGGCAAAGGCTTTGCAGAGAGACCTTTGTGGTGACCGTGTTGTCTGCCTGGTTGAGCAATATCTAGATGCTACAGTAGTAACCAATGGCATCTCCAGAGCATTCTCAACTGGAGCGTGGTGTCATCCTTTCAAGAGGATGGAGAGGATGTCTGGTGTGGTGGTAAATGTTGGGAAAACAAATCCACTGCAAACAATGGTAGATATGAGGAAGACACGCCTCCAAGTTCAATACACGGGGAAGGTCGGAGATGCCAGATATCCGCATCCTTCTCACTGGGGTAGGGTTTGCTTTATCTCAACCCCAGATGGTGAGAATTGTGGGCTTGTGAAAAATTTGGCTACCACTGCACTGGTAAGTACAAACATATTGGAGCCCATATTGCCCGACTTTTTCTCTAGTGGCATGGAGGAGCTGGTAGATGATACTTCAACATCACTTCATGGGAAGAATAAAGTTTTTCTCAATGGGGATTGGGTTGGTGTTTGTGAAGATTCCCATGATTTTGTCATGAAACTAAGGACATTGAGACGCAGGAAAAAGTTGCTACATCAGGTGGAAATCAAAAGAGATGAGCAGCTCCTGGAAGTACGCATATATTCTGATGCTGGAAGGATTCTACGTCCTTTCCTGGTAGTTAAGAATTTGAATAAGATTAAAGAATCAAAAGGGAAAAAACACACGTTCCAGGATCTTCTTGGCAATGGAATAATCGAGCTCATTGGAGCTGAAGAAGAAGAGGATTGCTGTACAGCATGGGACGTCAAGCATCTATTTATGGAGGGGAAGTCAGCAGTCAAGTACACACACTGTGAACTGGACCTATCATTTTTGTTAGGCTTAAGTTGTGGTATCATTCCGTTTTCAAACCATGATAACGCAAGGAGGGTTCTATACCAGTCTCAGAAGCACTCTCAGCAGGCCATTGGTTTTTCTGCCACAAATCCTAACCACAGAGTGGATACTCTGTCTCACCAACTACACTACCCTCAGAGGCCACTTTTTCATACTATGATATCTGATTGCCTTGGCCAACCAGGAAACCCAGTGAGCCATAACAGAGTTATGCCCAAGCCTGAATACTTTAATGGCCAAAATGCAATTGTTGCGGTCAATGTGCACCTAGGATATAACCAAGAAGATTCTATTGTGATGAACCGCGCATCTGTGCAACGTGGTATGTTCAAATCTGAGCACATACGGAGCTACAAGGCTGAAGTTGAAAACAAGTTCTCATTGGGAAAAAGGAGGAAGCCAGATGACTGTATAAATTTTGGCAAAATACAGAGTAAATTTGGAAGTGTTGACAGTCTTGATGATGATGGATTCCCCTGTATAGGTGCATATCTGCAGAGTGGTGATACTATTATTGCGAGGTGCAGTGAATCTGGTACTGATCATAGCATCAAACTGACGCATACTGAAAGAGGAAAGGTTCAGAAGGTTGTACTTTCCTCTAATGAAGAGGGAAAGAATTTTGGTGTTGTATCCTTAAGACAGGTTCGTTCTCCTTGCCTTGGAGACAAGTTCTCAAGCATGCATGGGCAGAAGGGTGTCCTAGGCTTTTTGGAGTCTGAAGAGAACTTCCCCTTCACAATACAGGGGATAGTTCCAGATATTGTAATTAATCCACATGCATTTCCTTCACGACAAGCTCCTGGTCAACTCCTAGAGGCTGCTTTAGGGAAGGGGATTGCCTGTGGTGGTCAACTCCTAGAGACAAGCTCCTGGTCAACTCCTAGAGACAAGCTCCTATATGCAACTCCTTTCTCTACTCCCTCTGTTGATGACATCACAGATCAGCTTCATAGAGCTGGATTTCAAAGATGGGGAAATGAGAGAGTATACAGTGGTCAAACTGGTCAAATGGTTCGCCAACTGATATTTATGGGCCCAACATTCTATCAACGTCTCATTCACATGTCTGAAGACAAAGTGAAGTTCAGGAACACTGGGCCAGTTCACCCTCTCACCCGGCAGCCAGTGGCAGACAGGAAGAGATTTGGTGGGGTAAAGTTTGGTGAGATGGAGCGCGACTGCCTTATAGCCCATGGAGCATCAGCAAACTTACATGAACGCCTTTTCACTCTTAGTGACTCCTCCCAAATGCATGCTTGCCTGAAATGCAAAAATGCGGCTAATGTGATAGATGGAACAGTTGATGGCAGTAGAATCAGGGGTCCATATTGCCGGGTCTCAGAGGGAACTGTTCAGGAGTATAATGCTATTATGACACTCAGGGATGAATGGGGCATCAACCCTCCAAGTTGGGTTGGTTCAGATCCTTGTGGCGACTGGGAAGGTATTACTTGCACCAATTCACAGATCACTGCTATAACATTGGCAGACATGGGTTTGAAAGGCGGGCTACCTAGTGATATCGAGACATTATCTGAGCTACAGATTCTGAATCTGGCTTTCAATGAGAACCTGAAGGGACAACTTCCAGCATCAATTGGAAACTTGACCAAACTAAACACCGTAATCCTGGATGGTTGCAGATTCTCTGGTCCTATTCCAGCTACAATAGGATCTTTAAAGCAACTTTCTTATCTATCTCTGAAAAACAATAGATTTAGTGGTCCAATTCCACCTTCCATTGGCAATCTAGCCAATCTTGTCTTTCTGGACCTATCGGACAACAGGCTTGGGGATTCCATTCCAGTCTCTAATGGGACTGCACCTGGTCTTGATATGTTAAATAAAACAAAGCACTTTCATTTTTCAAATAACCAGCTCTCGGGCAGCATTCCACCTCAACTGTTCAGCTCAAATATGCCTCTGATACATTTGATTTTTGACAGAAATAATTTTACTGGCAGCATCCCTTCCACACTTGGACTTGTGAAAACTCTGGAGGCAGTACGCCTTGATAGAAATTCATTAAGTGGGTCTGTACCTACGAGCCTCAGAAATCTTACAAATGTGTCTGAACTGCACCTGTCCAACAATAAGCTGACTGGCCCGGTGCCCAACCTTACTCTCATGGATTCCCTCAACTATGTGGATATGAGCAATAATACTTTTGATGCGTCAGATATTCCTAATTGGTTTTCAACCTTGAAGTTCTTGACAACATTAATGATGGAAAACACAGGACTTCAGGGACAAGTCCCTCAAGCCCTTTTCAGCCTTCAAAATTTGGAGACAGTGATACTGAAGAACAACAGTCTCAATGGTACATTGGATATTGGAACAAATTATGGCGACCAATTGAACCTAATTGATCTGCAGAAGAACAACATTGCTAATCTTGCACCAATTGATGAGGGATCCAACTACACATTGATTCTAGTTGACAATCCAATTTGTGAGGGGAGTCAGAATAACATGGCAAAGAACTACTGCAATGTTTCTCCTCCTAATTCCTCAATTTCAACTACACCAAGTAATTGTGCTGACTGTAGTTCCGGCCAGGTTGCTTCCCCCAACTGTAAATGTGCATCTCCCTATACACGGACTCTAGTCTTCTTATTTGTTTCTTTCTCAAACTTGGATGACGTCAATTATTACAAAGCTCTCTCAGACAATCTCACAAGATCTTTTCAGTCCAAAAACCTTCCTGTGGATTCAGTTTCACTGAGTCATCCGAGCTGGAGCTCATCTTATCAACTTGAAATTATCATAGAAATTTTCCCATCCGGTGATCAAGTTAGCTTCAACCAAACAGAAAGTTCAGCGATTACATCTGTTATTAGCAACCAGACTCTAGAGGGACGTCCAAATTCTTTTGGACCCTACTCTTTTCTTGTTCTTTACACCAACTCTGGAGGATCAAACAAGGCCGTGATAATTGGAACGGCAATTGGTGGTTCTGTGCTCCTTTCATTATTAGTCCTTGTAGGGCTTTATGCTCTCCACCAGAAGAGAAAAGCAGATGAGTCATTGAGTGGATCGATCCTTTTGACAGGGATTTCAAATAGCAGTGCTAGTGGTCCTCAACTAAAAGGAGCAAGATTGTTCTCATTTGAAGAGCTCAAGAAATGCACCGATGGTTTTTCGGAAGCAAATGATATTGGATCTGGGGGTTATGGCCAGGTGTATAAGGGAATTCTTCCAACAGGCCAAATGGCTGCCATTAAAAGAGCTAAACGGGAATCTCTGCAGGGAGGAGTTGAGTTCAAAGCCGAGGTTGAGCTCCTATCACGAGTACATCATAAGAATCTTGTTGGCCTTGTAGGTTTTTGTTTTGAGCAAGGGGAACAAATATTGGTATATGAGTATGTTCCAAATGGTGATTTGAGGGACAGCCTTTCAGGTATTCCATGCACTTGCACTTTACAAAGCTTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1515

Amino Acids

166.98

Weight (kDa)

8.02

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_3 PF04565 143 - 202 3.9e-17 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 237 - 298 5.8e-21 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5 PF04567 313 - 358 2.8e-07 RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 367 - 751 2.1e-103 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 753 - 814 1.1e-14 RNA polymerase Rpb2, domain 7
LRR_14 PF23598 873 - 937 7.4e-06 Leucine-rich repeat region
LRR_14 PF23598 925 - 1153 4.3e-09 Leucine-rich repeat region
Pkinase PF00069 1418 - 1503 7.2e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1421 - 1503 3e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 3 cut(s) 1017, 3756, 3973
AccB1I GGYRCC 1 cut(s) 3220
AccB7I CCANNNNNTGG 1 cut(s) 1210
AccI GTMKAC 1 cut(s) 2097
AccII CGCG 3 cut(s) 17, 1413, 2286
AciI CCGC 6 cut(s) 15, 515, 1361, 1411, 2387, 2616
AclWI GGATC 9 cut(s) 951, 2528, 2791, 3519, 3532, 4033, 4144, 4153, 4279
AcoI YGGCCR 4 cut(s) 1282, 1342, 3664, 4285
AcuI CTGAAG 9 cut(s) 121, 242, 1002, 1488, 1848, 2199, 2705, 3338, 3431
AcyI GRCGYC 3 cut(s) 1014, 3753, 3970
AdeI CACNNNGTG 2 cut(s) 1064, 1210
AfiI CCNNNNNNNGG 8 cut(s) 75, 1210, 1589, 1769, 2852, 2992, 3708, 3817
AflII CTTAAG 2 cut(s) 1093, 1744
AflIII ACRYGT 3 cut(s) 229, 933, 2172
AjuI GAANNNNNNNTTGG 2 cut(s) 2830, 2862
Alw21I GWGCWC 7 cut(s) 972, 1374, 1449, 3854, 4074, 4230, 4392
Alw44I GTGCAC 1 cut(s) 1370
AlwI GGATC 9 cut(s) 951, 2528, 2791, 3519, 3532, 4033, 4144, 4153, 4279
AlwNI CAGNNNCTG 2 cut(s) 835, 2659
Ama87I CYCGRG 2 cut(s) 27, 2992
ApaI GGGCCC 1 cut(s) 2147
ApaLI GTGCAC 1 cut(s) 1370
ApeKI GCWGC 6 cut(s) 829, 1928, 2230, 2997, 3072, 4325
AseI ATTAAT 2 cut(s) 1878, 3332
AspA2I CCTAGG 2 cut(s) 1375, 1810
AspLEI GCGC 3 cut(s) 252, 1415, 2286
AsuC2I CCSGG 3 cut(s) 2227, 2444, 3218
AvaI CYCGRG 2 cut(s) 27, 2992
AvaII GGWCC 7 cut(s) 1072, 2432, 2762, 2834, 2881, 3986, 4187
AvrII CCTAGG 2 cut(s) 1375, 1810
BaeGI GKGCMC 3 cut(s) 1374, 2147, 3225
BalI TGGCCA 3 cut(s) 1284, 1344, 4287
BamHI GGATCC 1 cut(s) 3524
BanI GGYRCC 1 cut(s) 3220
BanII GRGCYC 6 cut(s) 630, 972, 2147, 3854, 4230, 4392
BauI CACGAG 1 cut(s) 4398
BbsI GAAGAC 3 cut(s) 470, 2187, 3712
Bbv12I GWGCWC 7 cut(s) 972, 1374, 1449, 3854, 4074, 4230, 4392
BbvI GCAGC 6 cut(s) 841, 1915, 2242, 3009, 3084, 4312
BceAI ACGGC 2 cut(s) 4022, 4068
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciVI GTATCC 2 cut(s) 1207, 1750
BclI TGATCA 2 cut(s) 1648, 3898
BcnI CCSGG 3 cut(s) 2227, 2444, 3218
BfmI CTRYAG 6 cut(s) 324, 1601, 2651, 3482, 3655, 4355
BfrI CTTAAG 2 cut(s) 1093, 1744
BfuI GTATCC 2 cut(s) 1207, 1750
BglII AGATCT 1 cut(s) 3791
BisI GCNGC 7 cut(s) 830, 1929, 2231, 2388, 2998, 3073, 4326
BlnI CCTAGG 2 cut(s) 1375, 1810
BlsI GCNGC 7 cut(s) 831, 1930, 2232, 2389, 2999, 3074, 4327
Bme18I GGWCC 7 cut(s) 1072, 2432, 2762, 2834, 2881, 3986, 4187
BmeT110I CYCGRG 2 cut(s) 27, 2992
BmiI GGNNCC 6 cut(s) 627, 2145, 2433, 3222, 3526, 3988
BmrI ACTGGG 4 cut(s) 538, 1292, 2214, 2557
BmuI ACTGGG 4 cut(s) 538, 1292, 2214, 2557
BoxI GACNNNNGTC 1 cut(s) 3716
BpiI GAAGAC 3 cut(s) 470, 2187, 3712
BplI GAGNNNNNCTC 4 cut(s) 1961, 1993, 1986, 2018
BpmI CTGGAG 5 cut(s) 331, 384, 3128, 3868, 4041
BpuEI CTTGAG 3 cut(s) 1768, 3354, 4214
BpuMI CCSGG 3 cut(s) 2227, 2444, 3218
Bsa29I ATCGAT 1 cut(s) 4148
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 3 cut(s) 1014, 3753, 3970
BsaI GGTCTC 2 cut(s) 267, 2452
BsaJI CCNNGG 7 cut(s) 26, 1279, 1375, 1768, 1810, 2302, 4380
BsaWI WCCGGW 1 cut(s) 3893
BsaXI ACNNNNNCTCC 4 cut(s) 386, 416, 1025, 1055
Bsc4I CCNNNNNNNGG 8 cut(s) 75, 1210, 1589, 1769, 2852, 2992, 3708, 3817
Bse3DI GCAATG 3 cut(s) 961, 3495, 3607
BseCI ATCGAT 1 cut(s) 4148
BseDI CCNNGG 7 cut(s) 26, 1279, 1375, 1768, 1810, 2302, 4380
BseLI CCNNNNNNNGG 8 cut(s) 75, 1210, 1589, 1769, 2852, 2992, 3708, 3817
BseMI GCAATG 3 cut(s) 961, 3495, 3607
BseRI GAGGAG 5 cut(s) 15, 677, 2341, 3600, 4377
BseSI GKGCMC 3 cut(s) 1374, 2147, 3225
BseXI GCAGC 6 cut(s) 841, 1915, 2242, 3009, 3084, 4312
BsgI GTGCAG 4 cut(s) 585, 1651, 2916, 3173
Bsh1236I CGCG 3 cut(s) 17, 1413, 2286
BshNI GGYRCC 1 cut(s) 3220
BshVI ATCGAT 1 cut(s) 4148
BsiHKAI GWGCWC 7 cut(s) 972, 1374, 1449, 3854, 4074, 4230, 4392
BsiHKCI CYCGRG 2 cut(s) 27, 2992
BsiSI CCGG 5 cut(s) 2227, 2443, 3218, 3663, 3894
BslFI GGGAC 7 cut(s) 1025, 2703, 2941, 3350, 3372, 3981, 4511
BslI CCNNNNNNNGG 8 cut(s) 75, 1210, 1589, 1769, 2852, 2992, 3708, 3817
BsmBI CGTCTC 2 cut(s) 775, 2168
BsmFI GGGAC 7 cut(s) 1025, 2703, 2941, 3350, 3372, 3981, 4511
BsmI GAATGC 3 cut(s) 50, 353, 3000
Bso31I GGTCTC 2 cut(s) 267, 2452
BsoBI CYCGRG 2 cut(s) 27, 2992
Bsp120I GGGCCC 1 cut(s) 2143
Bsp1407I TGTACA 1 cut(s) 1001
Bsp19I CCATGG 1 cut(s) 2302
BspACI CCGC 6 cut(s) 15, 515, 1361, 1411, 2387, 2616
BspDI ATCGAT 1 cut(s) 4148
BspFNI CGCG 3 cut(s) 17, 1413, 2286
BspHI TCATGA 1 cut(s) 762
BspLI GGNNCC 6 cut(s) 627, 2145, 2433, 3222, 3526, 3988
BspMAI CTGCAG 3 cut(s) 1605, 3486, 4359
BspPI GGATC 9 cut(s) 951, 2528, 2791, 3519, 3532, 4033, 4144, 4153, 4279
BspQI GCTCTTC 1 cut(s) 4218
BspT107I GGYRCC 1 cut(s) 3220
BspTI CTTAAG 2 cut(s) 1093, 1744
BspTNI GGTCTC 2 cut(s) 267, 2452
BsrDI GCAATG 3 cut(s) 961, 3495, 3607
BsrGI TGTACA 1 cut(s) 1001
BssECI CCNNGG 7 cut(s) 26, 1279, 1375, 1768, 1810, 2302, 4380
BssNAI GTATAC 1 cut(s) 2098
BssNI GRCGYC 3 cut(s) 1014, 3753, 3970
BssSI CACGAG 1 cut(s) 4398
BssT1I CCWWGG 5 cut(s) 1279, 1375, 1768, 1810, 2302
Bst1107I GTATAC 1 cut(s) 2098
Bst2BI CACGAG 1 cut(s) 4398
Bst6I CTCTTC 6 cut(s) 984, 1710, 1824, 2243, 4112, 4218
BstACI GRCGYC 3 cut(s) 1014, 3753, 3970
BstAFI CTTAAG 2 cut(s) 1093, 1744
BstAPI GCANNNNNTGC 1 cut(s) 1358
BstAUI TGTACA 1 cut(s) 1001
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 5 cut(s) 1173, 1790, 2364, 2368, 2618
BstDSI CCRYGG 1 cut(s) 2302
BstEII GGTNACC 1 cut(s) 284
BstFNI CGCG 3 cut(s) 17, 1413, 2286
BstHHI GCGC 3 cut(s) 252, 1415, 2286
BstMWI GCNNNNNNNGC 8 cut(s) 211, 599, 634, 1168, 1358, 2306, 2376, 3506
BstNSI RCATGY 6 cut(s) 58, 242, 1792, 1889, 2176, 2366
BstPAI GACNNNNGTC 1 cut(s) 3716
BstPI GGTNACC 1 cut(s) 284
BstSFI CTRYAG 6 cut(s) 324, 1601, 2651, 3482, 3655, 4355
BstSLI GKGCMC 3 cut(s) 1374, 2147, 3225
BstUI CGCG 3 cut(s) 17, 1413, 2286
BstV1I GCAGC 6 cut(s) 841, 1915, 2242, 3009, 3084, 4312
BstV2I GAAGAC 3 cut(s) 470, 2187, 3712
BstX2I RGATCY 6 cut(s) 943, 2533, 2783, 3524, 3791, 4271
BstXI CCANNNNNNTGG 1 cut(s) 604
BstYI RGATCY 6 cut(s) 943, 2533, 2783, 3524, 3791, 4271
BstZ17I GTATAC 1 cut(s) 2098
Bsu15I ATCGAT 1 cut(s) 4148
BsuI GTATCC 2 cut(s) 1207, 1750
BsuTUI ATCGAT 1 cut(s) 4148
BtgI CCRYGG 1 cut(s) 2302
BtsI GCAGTG 5 cut(s) 437, 597, 1639, 2580, 4183
Cac8I GCNNGC 5 cut(s) 1173, 1790, 2364, 2368, 2618
CaiI CAGNNNCTG 2 cut(s) 835, 2659
CciI TCATGA 1 cut(s) 762
CfoI GCGC 3 cut(s) 252, 1415, 2286
ClaI ATCGAT 1 cut(s) 4148
CseI GACGC 3 cut(s) 792, 1675, 3273
CsiI ACCWGGT 1 cut(s) 2935
DraI TTTAAA 1 cut(s) 2790
DraIII CACNNNGTG 2 cut(s) 1064, 1210
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 4 cut(s) 1282, 1342, 3664, 4285
Eam1104I CTCTTC 6 cut(s) 984, 1710, 1824, 2243, 4112, 4218
EarI CTCTTC 6 cut(s) 984, 1710, 1824, 2243, 4112, 4218
Ecl136II GAGCTC 4 cut(s) 970, 3852, 4228, 4390
Eco130I CCWWGG 5 cut(s) 1279, 1375, 1768, 1810, 2302
Eco24I GRGCYC 6 cut(s) 630, 972, 2147, 3854, 4230, 4392
Eco31I GGTCTC 2 cut(s) 267, 2452
Eco32I GATATC 3 cut(s) 512, 1269, 2632
Eco47I GGWCC 7 cut(s) 1072, 2432, 2762, 2834, 2881, 3986, 4187
Eco53kI GAGCTC 4 cut(s) 970, 3852, 4228, 4390
Eco57I CTGAAG 9 cut(s) 121, 242, 1002, 1488, 1848, 2199, 2705, 3338, 3431
Eco88I CYCGRG 2 cut(s) 27, 2992
Eco91I GGTNACC 1 cut(s) 284
EcoICRI GAGCTC 4 cut(s) 970, 3852, 4228, 4390
EcoO65I GGTNACC 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 4302
EcoRV GATATC 3 cut(s) 512, 1269, 2632
EcoT14I CCWWGG 5 cut(s) 1279, 1375, 1768, 1810, 2302
EcoT22I ATGCAT 4 cut(s) 50, 1794, 1891, 2364
EcoT38I GRGCYC 6 cut(s) 630, 972, 2147, 3854, 4230, 4392
ErhI CCWWGG 5 cut(s) 1279, 1375, 1768, 1810, 2302
Esp3I CGTCTC 2 cut(s) 775, 2168
FaqI GGGAC 7 cut(s) 1025, 2703, 2941, 3350, 3372, 3981, 4511
FauI CCCGC 1 cut(s) 2609
FbaI TGATCA 2 cut(s) 1648, 3898
FblI GTMKAC 1 cut(s) 2097
Fnu4HI GCNGC 7 cut(s) 830, 1929, 2231, 2388, 2998, 3073, 4326
FriOI GRGCYC 6 cut(s) 630, 972, 2147, 3854, 4230, 4392
Fsp4HI GCNGC 7 cut(s) 830, 1929, 2231, 2388, 2998, 3073, 4326
GlaI GCGC 3 cut(s) 251, 1414, 2285
GluI GCNGC 7 cut(s) 830, 1929, 2231, 2388, 2998, 3073, 4326
GsuI CTGGAG 5 cut(s) 331, 384, 3128, 3868, 4041
HapII CCGG 5 cut(s) 2227, 2443, 3218, 3663, 3894
HgaI GACGC 3 cut(s) 792, 1675, 3273
HhaI GCGC 3 cut(s) 252, 1415, 2286
Hin1I GRCGYC 3 cut(s) 1014, 3753, 3970
Hin6I GCGC 3 cut(s) 250, 1413, 2284
HinP1I GCGC 3 cut(s) 250, 1413, 2284
HincII GTYRAC 5 cut(s) 1558, 1916, 1961, 1986, 3550
HindII GTYRAC 5 cut(s) 1558, 1916, 1961, 1986, 3550
HindIII AAGCTT 1 cut(s) 4537
HpaII CCGG 5 cut(s) 2227, 2443, 3218, 3663, 3894
HpyCH4IV ACGT 8 cut(s) 231, 874, 935, 1014, 1426, 2161, 3753, 3970
HpyF10VI GCNNNNNNNGC 8 cut(s) 211, 599, 634, 1168, 1358, 2306, 2376, 3506
HpySE526I ACGT 8 cut(s) 231, 874, 935, 1014, 1426, 2161, 3753, 3970
Hsp92I GRCGYC 3 cut(s) 1014, 3753, 3970
HspAI GCGC 3 cut(s) 250, 1413, 2284
Ksp22I TGATCA 2 cut(s) 1648, 3898
LguI GCTCTTC 1 cut(s) 4218
Lsp1109I GCAGC 6 cut(s) 841, 1915, 2242, 3009, 3084, 4312
MabI ACCWGGT 1 cut(s) 2935
MaeII ACGT 8 cut(s) 231, 874, 935, 1014, 1426, 2161, 3753, 3970
MaeIII GTNAC 4 cut(s) 155, 284, 331, 2345
MfeI CAATTG 5 cut(s) 1353, 2706, 3464, 3513, 4056
MflI RGATCY 6 cut(s) 943, 2533, 2783, 3524, 3791, 4271
MlsI TGGCCA 3 cut(s) 1284, 1344, 4287
MluNI TGGCCA 3 cut(s) 1284, 1344, 4287
MlyI GAGTC 7 cut(s) 1832, 2342, 3580, 3706, 3844, 3952, 4142
MmeI TCCRAC 4 cut(s) 478, 3222, 3552, 4334
Mox20I TGGCCA 3 cut(s) 1284, 1344, 4287
Mph1103I ATGCAT 4 cut(s) 50, 1794, 1891, 2364
MscI TGGCCA 3 cut(s) 1284, 1344, 4287
MslI CAYNNNNRTG 2 cut(s) 53, 2171
Msp20I TGGCCA 3 cut(s) 1284, 1344, 4287
MspCI CTTAAG 2 cut(s) 1093, 1744
MspI CCGG 5 cut(s) 2227, 2443, 3218, 3663, 3894
MunI CAATTG 5 cut(s) 1353, 2706, 3464, 3513, 4056
Mva1269I GAATGC 3 cut(s) 50, 353, 3000
MvnI CGCG 3 cut(s) 17, 1413, 2286
MwoI GCNNNNNNNGC 8 cut(s) 211, 599, 634, 1168, 1358, 2306, 2376, 3506
NciI CCSGG 3 cut(s) 2227, 2444, 3218
NcoI CCATGG 1 cut(s) 2302
NlaIV GGNNCC 6 cut(s) 627, 2145, 2433, 3222, 3526, 3988
NmeAIII GCCGAG 1 cut(s) 4405
NmuCI GTSAC 3 cut(s) 155, 284, 2345
NsiI ATGCAT 4 cut(s) 50, 1794, 1891, 2364
NspI RCATGY 6 cut(s) 58, 242, 1792, 1889, 2176, 2366
PaeI GCATGC 2 cut(s) 1792, 2366
PagI TCATGA 1 cut(s) 762
PciI ACATGT 1 cut(s) 2172
PciSI GCTCTTC 1 cut(s) 4218
PctI GAATGC 3 cut(s) 50, 353, 3000
PflMI CCANNNNNTGG 1 cut(s) 1210
PfoI TCCNGGA 3 cut(s) 834, 939, 2739
PkrI GCNGC 7 cut(s) 831, 1930, 2232, 2389, 2999, 3074, 4327
PleI GAGTC 7 cut(s) 1831, 2342, 3579, 3706, 3843, 3952, 4141
PpsI GAGTC 7 cut(s) 1831, 2342, 3579, 3706, 3843, 3952, 4141
Ppu21I YACGTR 1 cut(s) 232
PscI ACATGT 1 cut(s) 2172
PshAI GACNNNNGTC 1 cut(s) 3716
PshBI ATTAAT 2 cut(s) 1878, 3332
Psp124BI GAGCTC 4 cut(s) 972, 3854, 4230, 4392
PspEI GGTNACC 1 cut(s) 284
PspN4I GGNNCC 6 cut(s) 627, 2145, 2433, 3222, 3526, 3988
PspOMI GGGCCC 1 cut(s) 2143
PstI CTGCAG 3 cut(s) 1605, 3486, 4359
PstNI CAGNNNCTG 2 cut(s) 835, 2659
PsuI RGATCY 6 cut(s) 943, 2533, 2783, 3524, 3791, 4271
RseI CAYNNNNRTG 2 cut(s) 53, 2171
SacI GAGCTC 4 cut(s) 972, 3854, 4230, 4392
SapI GCTCTTC 1 cut(s) 4218
SatI GCNGC 7 cut(s) 830, 1929, 2231, 2388, 2998, 3073, 4326
SchI GAGTC 7 cut(s) 1832, 2342, 3580, 3706, 3844, 3952, 4142
SexAI ACCWGGT 1 cut(s) 2935
SfcI CTRYAG 6 cut(s) 324, 1601, 2651, 3482, 3655, 4355
SinI GGWCC 7 cut(s) 1072, 2432, 2762, 2834, 2881, 3986, 4187
SmiMI CAYNNNNRTG 2 cut(s) 53, 2171
SmlI CTYRAG 5 cut(s) 1093, 1744, 1783, 3369, 4229
SmoI CTYRAG 5 cut(s) 1093, 1744, 1783, 3369, 4229
SphI GCATGC 2 cut(s) 1792, 2366
SsiI CCGC 6 cut(s) 15, 515, 1361, 1411, 2387, 2616
SspI AATATT 1 cut(s) 4461
SstI GAGCTC 4 cut(s) 972, 3854, 4230, 4392
StyI CCWWGG 5 cut(s) 1279, 1375, 1768, 1810, 2302
TaiI ACGT 8 cut(s) 234, 877, 938, 1017, 1429, 2164, 3756, 3973
TaqI TCGA 3 cut(s) 966, 2634, 4148
TatI WGTACW 5 cut(s) 611, 1001, 1053, 1699, 4402
TauI GCSGC 1 cut(s) 2390
TseFI GTSAC 3 cut(s) 155, 284, 2345
TseI GCWGC 6 cut(s) 829, 1928, 2230, 2997, 3072, 4325
Tsp45I GTSAC 3 cut(s) 155, 284, 2345
TspGWI ACGGA 3 cut(s) 1101, 1468, 3724
Van91I CCANNNNNTGG 1 cut(s) 1210
Vha464I CTTAAG 2 cut(s) 1093, 1744
VneI GTGCAC 1 cut(s) 1370
VpaK11BI GGWCC 7 cut(s) 1072, 2432, 2762, 2834, 2881, 3986, 4187
VspI ATTAAT 2 cut(s) 1878, 3332
XbaI TCTAGA 3 cut(s) 208, 316, 3961
XceI RCATGY 6 cut(s) 58, 242, 1792, 1889, 2176, 2366
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmaJI CCTAGG 2 cut(s) 1375, 1810
XmiI GTMKAC 1 cut(s) 2097
ZraI GACGTC 3 cut(s) 1015, 3754, 3971
Zsp2I ATGCAT 4 cut(s) 50, 1794, 1891, 2364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.