Rroxscaffold_2G00148910

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002206
Physical Location & Seq
Forward (+)
86529719 .. 86539609
9891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00148910.1

Sequence Viewer

Length: 2718 bp
ATGGGAGTGTCACCGGATGCCAACGGAGATATAGGTATGAGTAGCAAGGGAAAGGGCTTTTCCAATGGGGATATTGAGGACTTGGATATTGATGACATGGATTTTGAGGATGATGAAGTCGATGATTCGACTAGCATTCATGATCTGGGAGAAGTGTTTCTCAAGGATTTCTGTAAGGAGGCATCAGTGTCATTCTTCAAGGAGTATGGCCTTCTCAGTCACCAGATAAACTCATACAATGACTTTGTTAAAAATGGCATACAAAGGGTCTTTGATTCTTTCGGTGAGATTGTAGTTGAGCCTGGGTATGACCCATCAAAGAAGGGAGATGCTGAGTGGCGATTTGCATCTGTCAAATTTGGTAAGGTCACCCTTAACCGACCCTGTTTTTGGGGAGGTTCTGACAATGATAAGGAGTATAATATGTTACCCAGACATGCTAGGCTTCAGAACATGACATACTCAGCCAGGATGAAAGTCAATATTACGATCCAGGTATATACTCAAAATCTTGTCAAAAGTGACAAGTTTAAAACTGGAAGAGAGCAATATCTGGACAAGCAGACTGTGAGTACTGACAGCAGGGACATCATAATTGGTCGGGTTCCTGTAATGGTGAAGTCTGACTTGTGTTGGATGACGGAAGTCGAGAAAGGTGACTGTGAGTTTGACCAGGGAGGCTACTTTATAATCAAGGGTGCAGAGAAGACGTTTATCGCTCAAGAACAGAGCTGTTTGAAGAGACTTCTGATTACAAATAATCAGGGTCTCACAGTAGCATATAGGTCAGAGGTCAAGCGGCATAGGCTCATAATTAGATTATCCGGGATTTCGAAACTTGAAAATGTTGAAGGAGTGGAGAAAGTGCTGTCAGTATACTTTATGTCAACAGAAATCCCTGTTTGGATTTGGTTTTTTGCCCTTGGGGTTAGTTCAGACAAAGAAGTTATCAATCTCATTGATTATGGCAAAGAAGATGCAAGCATTTCAAACATACTGTTTGCCTCAATTCGTGATGCTGATGAGAGAAAAGATGACTTTCGTAGGGGGAAGAATGCTCTGAGATATGTTGAAGGAGCGATAAAGAATACAACATTTCCACCTGGGGAAAGCATTGAGGACTGCATTAGCATGTATCTGTTTCCCAATCTGAAAGGCATGAAGCAGAAGGCTCGGTTTCTAGGGTATATGGTGAAGTGTCTTTTACAGACCTTCAGTGGCCGAAGGAAATGCGATAATAGGGATGACTTTAGAAACAAGAGGTTGGAGTTAGCAGGTGAGCTTCTAGAACGAGAGCTGAAGGCACATATTTCACATGCACGGAGGCGCATGGCAAAGGCTCTGCAGAGAGACCTATGTGGTGATCGTGTTGTCCGCCCAGTGGAGCACTATCTAGATGCATCTATAGTTACCAGTGGTGTTTCCAGAGCATTCTCTACTGGAGCATGGTGTCATCCTTTCAAGAGGATGGAGAGGATATCAGGTGTGGTTGCAAATGTTGGGCGAGCAAACCCACTGCAGACAATGATTGATATGAGGAAGACACGCCAGCAAGTTCAATACACTGGCAAGGCTGGAGATGCCAGATATCCGCATCCTTCTCACTGGGGTAAGGTTTGCTTTCTCTCAACCCCAGATGGTGAGAACTGTGGACTTGTAAAAAATTTGGCTACCACTGCTCTTGTAAGTACAAACATATTGGAGCCCATATTGCCCAAATTGTTCCGATGTGGCATGGAGGAGTTGGTAGATGATACTTCTACTTCACTGGATGGGAAGCATAAAGTTTTTCTGAATGGTGACTGGGTTGGCGTTTGTGTAGATTCCCATGGTTTTGTCACGAAACTAAGGACATTGCGACGCGGGAAAAAGTTGCCACACGAGGTGGAAATCAAAAGAGATGAACTCCAAGGAGAAGTGCGCATATTTTCTGATGCTGGAAGGATTCTACGTCCGCTCTTGGTAGTCCAGAATTTGAAGAAGATTAAAGCAGCAAAAGGAGAAAAACTTACCTTCAAAGATTTTCTTGGCAAGGGAATAATTGAGCTCATTGGCCCGGAAGAAGAAGAGGATTGCCGTACAGCATGGGCAATTAAGTATCTGTTTATGGAACAGGGAAACTCAGTTGTCAAGTACACACACTGTGAGCTGGACATGTCGTTTTTGTTGGGTTTAAGCTGTGGTATCATTCCCTTTGCAAATCATGATCATGCAAGGAGGGTGCTGTACCAGTCTCAGAAGCACTCTCAGCAGGCCATTGGTTTTTCTACTACAAATCCGAACCTCAGAGTGGATACTTTGTCTCACAACTTACACTACCCCCAGAGGCCGCTCTTTCGTACAATGATATCTGATTCTCTTGGAAAACCAGGATACCCAGTGGGACATAATGGTATCATGCCAAAGCCTGAGTACTTCAATGGCCAAAATGCAATTGTTGCAGTCAACGTGCACCTCGGATATAACCAAGAAGATTCAATAGTAATGAACCGGGCATCACTAGAACGTGGTATGTTTCGATCTGAGCACATAAGGAGTTACAAGGCTGAAGTTGAAAACAAGCTCTCAGTGGAAAAAAGACGAAAACCAGATGAGTGTGTAAATTTTGGCAAAATCCAGAGTAAATTTGGACGTGTTGACAGCCTTGATGATGATGGATTCCCCCTGTGTTGGTGCCAATCTGCAGAATGGGGATATTATTATTGGGAGGTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

905

Amino Acids

102.91

Weight (kDa)

8.2

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_1 PF04563 70 - 453 7e-35 RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 284 - 423 4.4e-12 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 502 - 561 4.4e-15 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 596 - 657 5.1e-22 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6 PF00562 727 - 888 3.6e-29 RNA polymerase Rpb2, domain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AarI CACCTGC 1 cut(s) 1265
Acc16I TGCGCA 1 cut(s) 1922
Acc36I ACCTGC 1 cut(s) 1265
AccB1I GGYRCC 1 cut(s) 2673
AccBSI CCGCTC 2 cut(s) 1957, 2332
AccI GTMKAC 1 cut(s) 876
AccII CGCG 1 cut(s) 1863
AciI CCGC 6 cut(s) 799, 1375, 1592, 1863, 1955, 2330
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 2 cut(s) 1219, 2422
AcsI RAATTY 5 cut(s) 356, 1663, 1972, 2602, 2624
AcuI CTGAAG 4 cut(s) 431, 1198, 1319, 2568
AdeI CACNNNGTG 2 cut(s) 1885, 2144
AfaI GTAC 7 cut(s) 574, 1690, 2080, 2135, 2228, 2341, 2414
AfiI CCNNNNNNNGG 4 cut(s) 390, 1381, 2290, 2670
AflIII ACRYGT 2 cut(s) 2154, 2632
AjiI CACGTC 1 cut(s) 2633
AjnI CCWGG 6 cut(s) 301, 467, 492, 672, 1102, 2368
AluBI AGCT 7 cut(s) 732, 1282, 1297, 2047, 2149, 2178, 2563
AluI AGCT 7 cut(s) 732, 1282, 1297, 2047, 2149, 2178, 2563
Alw21I GWGCWC 4 cut(s) 1389, 2049, 2454, 2529
Alw26I GTCTC 5 cut(s) 736, 773, 1344, 2238, 2307
Alw44I GTGCAC 1 cut(s) 2450
AlwI GGATC 1 cut(s) 484
AoxI GGCC 6 cut(s) 208, 1219, 2053, 2253, 2327, 2422
ApaLI GTGCAC 1 cut(s) 2450
ApeKI GCWGC 1 cut(s) 1991
ApoI RAATTY 5 cut(s) 356, 1663, 1972, 2602, 2624
ArsI GACNNNNNNTTYG 6 cut(s) 86, 118, 372, 404, 650, 682
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 1329, 1923
AspS9I GGNCC 1 cut(s) 2054
AsuC2I CCSGG 3 cut(s) 826, 2057, 2492
AsuII TTCGAA 1 cut(s) 833
BaeGI GKGCMC 1 cut(s) 2454
BalI TGGCCA 1 cut(s) 2424
BanI GGYRCC 1 cut(s) 2673
BanII GRGCYC 2 cut(s) 1707, 2049
BauI CACGAG 1 cut(s) 1880
BbsI GAAGAC 2 cut(s) 713, 1547
Bbv12I GWGCWC 4 cut(s) 1389, 2049, 2454, 2529
BbvI GCAGC 1 cut(s) 2003
BccI CCATC 5 cut(s) 322, 1462, 1631, 1766, 2648
BceAI ACGGC 1 cut(s) 2061
BcgI CGANNNNNNTGC 4 cut(s) 1154, 1188, 1212, 1246
BciT130I CCWGG 6 cut(s) 303, 469, 494, 674, 1104, 2370
BciVI GTATCC 2 cut(s) 2287, 2366
BclI TGATCA 1 cut(s) 2206
BcnI CCSGG 3 cut(s) 826, 2057, 2492
BcoDI GTCTC 5 cut(s) 736, 773, 1344, 2238, 2307
BfaI CTAG 6 cut(s) 132, 441, 1181, 1286, 1394, 2501
BfmI CTRYAG 4 cut(s) 1343, 1404, 1517, 2682
BfuAI ACCTGC 1 cut(s) 1265
BfuI GTATCC 2 cut(s) 2287, 2366
BisI GCNGC 3 cut(s) 800, 1992, 2330
BlsI GCNGC 3 cut(s) 801, 1993, 2331
BmcAI AGTACT 2 cut(s) 574, 2414
Bme1390I CCNGG 9 cut(s) 303, 469, 494, 674, 826, 1104, 2057, 2370, 2492
BmgBI CACGTC 1 cut(s) 2633
BmgT120I GGNCC 1 cut(s) 2054
BmiI GGNNCC 3 cut(s) 606, 1704, 2675
BmrFI CCNGG 9 cut(s) 303, 469, 494, 674, 826, 1104, 2057, 2370, 2492
BmrI ACTGGG 4 cut(s) 1373, 1615, 1813, 2372
BmuI ACTGGG 4 cut(s) 1373, 1615, 1813, 2372
BoxI GACNNNNGTC 1 cut(s) 644
BpiI GAAGAC 2 cut(s) 713, 1547
BplI GAGNNNNNCTC 2 cut(s) 1890, 1922
BpmI CTGGAG 2 cut(s) 1461, 1596
Bpu14I TTCGAA 1 cut(s) 833
BpuEI CTTGAG 2 cut(s) 146, 705
BpuMI CCSGG 3 cut(s) 826, 2057, 2492
BsaBI GATNNNNATC 1 cut(s) 346
BsaI GGTCTC 2 cut(s) 773, 1344
BsaJI CCNNGG 7 cut(s) 302, 673, 922, 1103, 1828, 1909, 2455
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 1 cut(s) 2699
Bsc4I CCNNNNNNNGG 4 cut(s) 390, 1381, 2290, 2670
Bse3DI GCAATG 1 cut(s) 1853
Bse8I GATNNNNATC 1 cut(s) 346
BseBI CCWGG 6 cut(s) 303, 469, 494, 674, 1104, 2370
BseDI CCNNGG 7 cut(s) 302, 673, 922, 1103, 1828, 1909, 2455
BseGI GGATG 9 cut(s) 22, 115, 477, 642, 1249, 1453, 1473, 1594, 1777
BseJI GATNNNNATC 1 cut(s) 346
BseLI CCNNNNNNNGG 4 cut(s) 390, 1381, 2290, 2670
BseMI GCAATG 1 cut(s) 1853
BseRI GAGGAG 1 cut(s) 1754
BseSI GKGCMC 1 cut(s) 2454
BseXI GCAGC 1 cut(s) 2003
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 1863
BshFI GGCC 6 cut(s) 210, 1221, 2055, 2255, 2329, 2424
BshNI GGYRCC 1 cut(s) 2673
BsiHKAI GWGCWC 4 cut(s) 1389, 2049, 2454, 2529
BsiSI CCGG 4 cut(s) 14, 825, 2057, 2491
BslFI GGGAC 2 cut(s) 599, 2397
BslI CCNNNNNNNGG 4 cut(s) 390, 1381, 2290, 2670
BsmAI GTCTC 5 cut(s) 736, 773, 1344, 2238, 2307
BsmFI GGGAC 2 cut(s) 599, 2397
BsmI GAATGC 3 cut(s) 135, 1060, 1430
BsnI GGCC 6 cut(s) 210, 1221, 2055, 2255, 2329, 2424
Bso31I GGTCTC 2 cut(s) 773, 1344
Bsp119I TTCGAA 1 cut(s) 833
Bsp1286I GDGCHC 5 cut(s) 1389, 1707, 2049, 2454, 2529
Bsp143I GATC 5 cut(s) 142, 489, 1363, 2206, 2519
Bsp19I CCATGG 1 cut(s) 1828
BspACI CCGC 6 cut(s) 799, 1375, 1592, 1863, 1955, 2330
BspANI GGCC 6 cut(s) 210, 1221, 2055, 2255, 2329, 2424
BspFNI CGCG 1 cut(s) 1863
BspHI TCATGA 2 cut(s) 139, 2203
BspLI GGNNCC 3 cut(s) 606, 1704, 2675
BspMAI CTGCAG 3 cut(s) 1347, 1521, 2686
BspMI ACCTGC 1 cut(s) 1265
BspPI GGATC 1 cut(s) 484
BspT104I TTCGAA 1 cut(s) 833
BspT107I GGYRCC 1 cut(s) 2673
BspTNI GGTCTC 2 cut(s) 773, 1344
BsrBI CCGCTC 2 cut(s) 1957, 2332
BsrDI GCAATG 1 cut(s) 1853
BssECI CCNNGG 7 cut(s) 302, 673, 922, 1103, 1828, 1909, 2455
BssMI GATC 5 cut(s) 142, 489, 1363, 2206, 2519
BssNAI GTATAC 1 cut(s) 877
BssSI CACGAG 1 cut(s) 1880
BssT1I CCWWGG 3 cut(s) 922, 1828, 1909
Bst1107I GTATAC 1 cut(s) 877
Bst2BI CACGAG 1 cut(s) 1880
Bst2UI CCWGG 6 cut(s) 303, 469, 494, 674, 1104, 2370
Bst4CI ACNGT 6 cut(s) 568, 662, 775, 999, 1649, 2144
Bst6I CTCTTC 3 cut(s) 535, 734, 2061
BstAPI GCANNNNNTGC 1 cut(s) 2438
BstBI TTCGAA 1 cut(s) 833
BstC8I GCNNGC 4 cut(s) 982, 1506, 1550, 2253
BstDSI CCRYGG 1 cut(s) 1828
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 9 cut(s) 22, 115, 477, 642, 1249, 1453, 1473, 1594, 1777
BstFNI CGCG 1 cut(s) 1863
BstHHI GCGC 2 cut(s) 1329, 1923
BstKTI GATC 5 cut(s) 145, 492, 1366, 2209, 2522
BstMAI GTCTC 5 cut(s) 736, 773, 1344, 2238, 2307
BstMBI GATC 5 cut(s) 142, 489, 1363, 2206, 2519
BstMWI GCNNNNNNNGC 6 cut(s) 805, 1580, 1676, 1711, 2248, 2438
BstNI CCWGG 6 cut(s) 303, 469, 494, 674, 1104, 2370
BstNSI RCATGY 4 cut(s) 440, 1135, 1319, 2158
BstPAI GACNNNNGTC 1 cut(s) 644
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 9 cut(s) 301, 467, 492, 672, 824, 1102, 2055, 2368, 2490
BstSFI CTRYAG 4 cut(s) 1343, 1404, 1517, 2682
BstSLI GKGCMC 1 cut(s) 2454
BstUI CGCG 1 cut(s) 1863
BstV1I GCAGC 1 cut(s) 2003
BstV2I GAAGAC 2 cut(s) 713, 1547
BstZ17I GTATAC 1 cut(s) 877
BsuI GTATCC 2 cut(s) 2287, 2366
BsuRI GGCC 6 cut(s) 210, 1221, 2055, 2255, 2329, 2424
BtgI CCRYGG 1 cut(s) 1828
BtrI CACGTC 1 cut(s) 2633
BtsCI GGATG 9 cut(s) 22, 115, 477, 642, 1249, 1453, 1473, 1594, 1777
BtsI GCAGTG 2 cut(s) 1514, 1674
BveI ACCTGC 1 cut(s) 1265
Cac8I GCNNGC 4 cut(s) 982, 1506, 1550, 2253
CciI TCATGA 2 cut(s) 139, 2203
CfoI GCGC 2 cut(s) 1329, 1923
Cfr13I GGNCC 1 cut(s) 2054
CseI GACGC 1 cut(s) 1869
Csp6I GTAC 7 cut(s) 573, 1689, 2079, 2134, 2227, 2340, 2413
CspCI CAANNNNNGTGG 2 cut(s) 1663, 1698
CviQI GTAC 7 cut(s) 573, 1689, 2079, 2134, 2227, 2340, 2413
DpnI GATC 5 cut(s) 144, 491, 1365, 2208, 2521
DpnII GATC 5 cut(s) 142, 489, 1363, 2206, 2519
DraI TTTAAA 1 cut(s) 532
DraIII CACNNNGTG 2 cut(s) 1885, 2144
EaeI YGGCCR 2 cut(s) 1219, 2422
Eam1104I CTCTTC 3 cut(s) 535, 734, 2061
EarI CTCTTC 3 cut(s) 535, 734, 2061
EciI GGCGGA 1 cut(s) 1364
Ecl136II GAGCTC 1 cut(s) 2047
Eco130I CCWWGG 3 cut(s) 922, 1828, 1909
Eco24I GRGCYC 2 cut(s) 1707, 2049
Eco31I GGTCTC 2 cut(s) 773, 1344
Eco32I GATATC 3 cut(s) 1479, 1589, 2349
Eco53kI GAGCTC 1 cut(s) 2047
Eco57I CTGAAG 4 cut(s) 431, 1198, 1319, 2568
Eco91I GGTNACC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 2047
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 6 cut(s) 301, 467, 492, 672, 1102, 2368
EcoRV GATATC 3 cut(s) 1479, 1589, 2349
EcoT14I CCWWGG 3 cut(s) 922, 1828, 1909
EcoT22I ATGCAT 1 cut(s) 1402
EcoT38I GRGCYC 2 cut(s) 1707, 2049
ErhI CCWWGG 3 cut(s) 922, 1828, 1909
FalI AAGNNNNNCTT 6 cut(s) 611, 643, 1604, 1636, 2010, 2042
FaqI GGGAC 2 cut(s) 599, 2397
FauI CCCGC 1 cut(s) 1856
FbaI TGATCA 1 cut(s) 2206
FblI GTMKAC 1 cut(s) 876
Fnu4HI GCNGC 3 cut(s) 800, 1992, 2330
FokI GGATG 9 cut(s) 29, 122, 484, 649, 1256, 1440, 1480, 1581, 1784
FriOI GRGCYC 2 cut(s) 1707, 2049
Fsp4HI GCNGC 3 cut(s) 800, 1992, 2330
FspAI RTGCGCAY 1 cut(s) 1922
FspBI CTAG 6 cut(s) 132, 441, 1181, 1286, 1394, 2501
FspI TGCGCA 1 cut(s) 1922
GlaI GCGC 2 cut(s) 1328, 1922
GluI GCNGC 3 cut(s) 800, 1992, 2330
GsuI CTGGAG 2 cut(s) 1461, 1596
HaeIII GGCC 6 cut(s) 210, 1221, 2055, 2255, 2329, 2424
HapII CCGG 4 cut(s) 14, 825, 2057, 2491
HgaI GACGC 1 cut(s) 1869
HhaI GCGC 2 cut(s) 1329, 1923
Hin6I GCGC 2 cut(s) 1327, 1921
HinP1I GCGC 2 cut(s) 1327, 1921
HincII GTYRAC 3 cut(s) 888, 2446, 2638
HindII GTYRAC 3 cut(s) 888, 2446, 2638
HinfI GANTC 7 cut(s) 125, 275, 1823, 1945, 2354, 2474, 2658
HpaII CCGG 4 cut(s) 14, 825, 2057, 2491
Hpy166II GTNNAC 7 cut(s) 877, 888, 1652, 2136, 2446, 2452, 2638
Hpy8I GTNNAC 7 cut(s) 877, 888, 1652, 2136, 2446, 2452, 2638
Hpy99I CGWCG 1 cut(s) 1863
HpyCH4III ACNGT 6 cut(s) 568, 662, 775, 999, 1649, 2144
HpyCH4IV ACGT 5 cut(s) 710, 1951, 2448, 2506, 2632
HpyF10VI GCNNNNNNNGC 6 cut(s) 805, 1580, 1676, 1711, 2248, 2438
HpySE526I ACGT 5 cut(s) 710, 1951, 2448, 2506, 2632
HspAI GCGC 2 cut(s) 1327, 1921
Ksp22I TGATCA 1 cut(s) 2206
Kzo9I GATC 5 cut(s) 142, 489, 1363, 2206, 2519
LmnI GCTCC 4 cut(s) 1076, 1384, 1442, 1702
Lsp1109I GCAGC 1 cut(s) 2003
MaeI CTAG 6 cut(s) 132, 441, 1181, 1286, 1394, 2501
MaeII ACGT 5 cut(s) 710, 1951, 2448, 2506, 2632
MalI GATC 5 cut(s) 144, 491, 1365, 2208, 2521
MbiI CCGCTC 2 cut(s) 1957, 2332
MboI GATC 5 cut(s) 142, 489, 1363, 2206, 2519
MfeI CAATTG 1 cut(s) 2433
MhlI GDGCHC 5 cut(s) 1389, 1707, 2049, 2454, 2529
MlsI TGGCCA 1 cut(s) 2424
MluNI TGGCCA 1 cut(s) 2424
MmeI TCCRAC 2 cut(s) 614, 1245
Mox20I TGGCCA 1 cut(s) 2424
Mph1103I ATGCAT 1 cut(s) 1402
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 2424
MseI TTAA 6 cut(s) 249, 375, 531, 1986, 2094, 2174
MslI CAYNNNNRTG 2 cut(s) 1130, 2208
Msp20I TGGCCA 1 cut(s) 2424
MspI CCGG 4 cut(s) 14, 825, 2057, 2491
MspR9I CCNGG 9 cut(s) 303, 469, 494, 674, 826, 1104, 2057, 2370, 2492
MunI CAATTG 1 cut(s) 2433
Mva1269I GAATGC 3 cut(s) 135, 1060, 1430
MvaI CCWGG 6 cut(s) 303, 469, 494, 674, 1104, 2370
MvnI CGCG 1 cut(s) 1863
MwoI GCNNNNNNNGC 6 cut(s) 805, 1580, 1676, 1711, 2248, 2438
NciI CCSGG 3 cut(s) 826, 2057, 2492
NcoI CCATGG 1 cut(s) 1828
NdeII GATC 5 cut(s) 142, 489, 1363, 2206, 2519
NlaIV GGNNCC 3 cut(s) 606, 1704, 2675
NmuCI GTSAC 7 cut(s) 9, 218, 367, 521, 656, 1799, 1837
NsbI TGCGCA 1 cut(s) 1922
NsiI ATGCAT 1 cut(s) 1402
NspI RCATGY 4 cut(s) 440, 1135, 1319, 2158
NspV TTCGAA 1 cut(s) 833
PagI TCATGA 2 cut(s) 139, 2203
PaqCI CACCTGC 1 cut(s) 1265
PciI ACATGT 1 cut(s) 2154
PctI GAATGC 3 cut(s) 135, 1060, 1430
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 7 cut(s) 125, 275, 1823, 1945, 2354, 2474, 2658
PfoI TCCNGGA 1 cut(s) 824
PkrI GCNGC 3 cut(s) 801, 1993, 2331
PscI ACATGT 1 cut(s) 2154
PshAI GACNNNNGTC 1 cut(s) 644
PsiI TTATAA 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 2049
Psp6I CCWGG 6 cut(s) 301, 467, 492, 672, 1102, 2368
PspEI GGTNACC 1 cut(s) 367
PspGI CCWGG 6 cut(s) 301, 467, 492, 672, 1102, 2368
PspN4I GGNNCC 3 cut(s) 606, 1704, 2675
PspPI GGNCC 1 cut(s) 2054
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
PstI CTGCAG 3 cut(s) 1347, 1521, 2686
RsaI GTAC 7 cut(s) 574, 1690, 2080, 2135, 2228, 2341, 2414
RsaNI GTAC 7 cut(s) 573, 1689, 2079, 2134, 2227, 2340, 2413
RseI CAYNNNNRTG 2 cut(s) 1130, 2208
SacI GAGCTC 1 cut(s) 2049
SaqAI TTAA 6 cut(s) 249, 375, 531, 1986, 2094, 2174
SatI GCNGC 3 cut(s) 800, 1992, 2330
Sau3AI GATC 5 cut(s) 142, 489, 1363, 2206, 2519
Sau96I GGNCC 1 cut(s) 2054
ScaI AGTACT 2 cut(s) 574, 2414
ScrFI CCNGG 9 cut(s) 303, 469, 494, 674, 826, 1104, 2057, 2370, 2492
SduI GDGCHC 5 cut(s) 1389, 1707, 2049, 2454, 2529
SfcI CTRYAG 4 cut(s) 1343, 1404, 1517, 2682
SfuI TTCGAA 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 1130, 2208
SmlI CTYRAG 2 cut(s) 161, 720
SmoI CTYRAG 2 cut(s) 161, 720
SsiI CCGC 6 cut(s) 799, 1375, 1592, 1863, 1955, 2330
SspI AATATT 1 cut(s) 484
SspMI CTAG 6 cut(s) 132, 441, 1181, 1286, 1394, 2501
SstI GAGCTC 1 cut(s) 2049
StyD4I CCNGG 9 cut(s) 301, 467, 492, 672, 824, 1102, 2055, 2368, 2490
StyI CCWWGG 3 cut(s) 922, 1828, 1909
TaaI ACNGT 6 cut(s) 568, 662, 775, 999, 1649, 2144
TaiI ACGT 5 cut(s) 713, 1954, 2451, 2509, 2635
TaqI TCGA 5 cut(s) 120, 128, 648, 833, 2518
TatI WGTACW 4 cut(s) 572, 1688, 2133, 2412
TauI GCSGC 2 cut(s) 802, 2332
TfiI GAWTC 7 cut(s) 125, 275, 1823, 1945, 2354, 2474, 2658
Tru1I TTAA 6 cut(s) 249, 375, 531, 1986, 2094, 2174
Tru9I TTAA 6 cut(s) 249, 375, 531, 1986, 2094, 2174
TseFI GTSAC 7 cut(s) 9, 218, 367, 521, 656, 1799, 1837
TseI GCWGC 1 cut(s) 1991
Tsp45I GTSAC 7 cut(s) 9, 218, 367, 521, 656, 1799, 1837
TspDTI ATGAA 6 cut(s) 128, 129, 488, 1175, 1917, 2501
TspGWI ACGGA 3 cut(s) 39, 656, 1336
VneI GTGCAC 1 cut(s) 2450
XapI RAATTY 5 cut(s) 356, 1663, 1972, 2602, 2624
XbaI TCTAGA 2 cut(s) 1285, 1393
XceI RCATGY 4 cut(s) 440, 1135, 1319, 2158
XcmI CCANNNNNNNNNTGG 1 cut(s) 2624
XmiI GTMKAC 1 cut(s) 876
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 6 cut(s) 132, 441, 1181, 1286, 1394, 2501
ZrmI AGTACT 2 cut(s) 574, 2414
Zsp2I ATGCAT 1 cut(s) 1402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.