AT3G23780

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002206
Physical Location & Seq
Reverse (-)
8567572 .. 8574209
6638 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23780.2

Sequence Viewer

Length: 3519 bp
ATGCCAGATATGGACATTGATGTGAAGGATCTTGAAGAGTTCGAGGCTACTACTGGGGAGATCAATCTATCTGAGCTAGGAGAAGGTTTTCTGCAGAGTTTCTGCAAAAAAGCTGCAACTTCTTTCTTTGATAAGTATGGACTTATAAGTCATCAGCTCAACTCCTACAACTACTTCATTGAACACGGGCTTCAGAATGTGTTTCAATCCTTTGGTGAGATGCTTGTGGAACCGTCTTTTGATGTTGTAAAGAAGAAGGATAATGATTGGAGATACGCAACGGTGAAGTTCGGAGAAGTCACTGTGGAGAAGCCTACTTTCTTTTCGGATGACAAGGAGCTTGAGTTTCTCCCATGGCATGCTAGGCTTCAGAACATGACATACTCTGCAAGGATCAAAGTCAATGTCCAAGTTGAGGTGTTCAAGAATACTGTTGTTAAAAGCGACAAATTCAAGACAGGACAAGACAACTATGTCGAGAAGAAGATACTGGATGTCAAAAAGCAGGACATTCTAATTGGTAGCATTCCTGTCATGGTGAAATCTATCCTTTGCAAAACAAGCGAGAAAGGGAAAGAAAACTGCAAAAAGGGGGATTGTGCCTTTGATCAGGGTGGATATTTCGTGATAAAGGGGGCTGAGAAGGTGTTTATAGCTCAAGAACAGATGTGCACAAAGAGACTGTGGATTTCTAATTCACCATGGACAGTCTCCTTCAGGTCCGAAAATAAAAGAAATAGATTCATTGTGCGCCTCTCGGAGAATGAGAAAGCAGAAGACTATAAGAGAAGGGAGAAAGTACTGACAGTGTACTTCTTGTCGACTGAGATTCCAGTCTGGCTCCTCTTCTTTGCGCTAGGTGTTTCGTCAGACAAAGAAGCCATGGATCTAATTGCTTTTGATGGTGATGATGCAAGCATTACCAACAGTCTCATAGCTTCTATCCATGTAGCTGATGCAGTTTGTGAAGCTTTTCGCTGTGGGAACAATGCTTTAACATATGTTGAACAGCAGATCAAAAGCACCAAATTCCCTCCTGCTGAAAGTGTGGATGAGTGCCTCCATCTGTATTTGTTTCCAGGCCTCCAAAGTTTGAAGAAGAAAGCTCGATTCCTGGGCTATATGGTGAAGTGCCTTCTGAACTCGTATGCGGGAAAAAGAAAATGCGAAAACAGGGACAGTTTCCGGAATAAGCGAATTGAGCTCGCTGGAGAACTATTGGAGAGGGAGATAAGGGTGCATCTGGCACATGCTAGAAGAAAGATGACCAGGGCCATGCAGAAACACCTCTCAGGCGATGGTGATTTGAAGCCTATTGAGCATTATTTGGATGCTTCTGTTATCACAAATGGGCTTAGTAGAGCCTTCTCTACTGGAGCATGGTCTCATCCTTTCAGGAAGATGGAAAGGGTTTCAGGTGTTGTGGCTAATTTGGGTCGTGCAAATCCATTGCAGACTCTGATTGATCTGAGGAGAACGCGACAGCAAGTCTTATATACCGGCAAGGTTGGAGATGCTAGATATCCGCACCCCTCTCACTGGGGCAGAGTATGCTTTTTGTCAACTCCAGACGGTGAAAATTGTGGTCTTGTGAAGAACATGTCTCTTCTGGGACTTGTGAGCACCCAAAGTTTGGAGTCTGTGGTGGAAAAGCTCTTCGCTTGTGGAATGGAAGAGCTGATGGATGATACATGCACACCATTGTTTGGCAAACATAAAGTTCTTCTCAATGGAGACTGGGTTGGATTATGTGCAGATTCTGAATCCTTTGTCGCGGAGTTAAAAAGCAGGCGGCGCCAAAGTGAATTACCTCGTGAGATGGAAATCAAGCGAGATAAAGATGACAATGAGGTAAGAATTTTCACTGATGCTGGTAGACTACTCCGACCTCTCTTGGTTGTGGAAAATCTCCAAAAGTTGAAGCAAGAAAAACCTTCACAGTATCCTTTTGACCATCTTCTTGACCATGGGATTCTCGAGCTGATCGGGATTGAGGAAGAAGAAGACTGTAATACAGCATGGGGAATCAAACAGCTTCTGAAGGAACCAAAGATATACACACATTGCGAATTGGACCTGTCATTCTTGTTGGGTGTGAGCTGTGCAGTTGTCCCATTTGCAAATCACGACCATGGGAGAAGAGTTCTCTACCAGTCCCAGAAGCACTGCCAACAAGCCATTGGATTCTCATCAACGAACCCTAACATCCGCTGCGATACGCTGTCCCAGCAGCTGTTCTATCCTCAGAAGCCACTGTTCAAGACATTGGCGTCGGAGTGTCTTAAAAAAGAAGTGCTGTTCAATGGCCAGAACGCAATTGTTGCTGTGAATGTTCATCTCGGGTACAACCAAGAGGATTCCATTGTGATGAACAAGGCTTCATTGGAACGTGGTATGTTCCGTTCAGAGCAGATTAGAAGCTACAAAGCAGAGGTTGATGCTAAAGACTCAGAGAAGAGGAAGAAGATGGATGAGCTTGTTCAGTTTGGAAAGACACACAGCAAAATCGGCAAAGTAGACAGCCTTGAAGATGACGGGTTTCCTTTCATTGGTGCTAACATGAGTACTGGCGATATTGTCATTGGCAGATGCACCGAGTCTGGGGCTGATCACAGTATAAAGCTCAAGCACACTGAGAGAGGAATTGTGCAAAAAGTGGTATTATCATCTAATGATGAAGGGAAGAATTTTGCTGCGGTTTCTCTGAGACAGGTTCGTTCTCCATGCCTTGGAGATAAGTTTTCCAGTATGCATGGCCAGAAGGGTGTTTTAGGCTACCTAGAGGAACAGCAGAATTTTCCTTTCACGATCCAAGGCATAGTTCCTGATATTGTGATAAACCCGCACGCTTTCCCTTCTAGGCAAACACCAGGTCAACTCTTGGAGGCTGCTCTCTCCAAAGGAATCGCTTGTCCTATACAAAAGGAGGGTAGCTCTGCTGCATACACCAAATTGACACGTCATGCCACTCCTTTCTCCACTCCGGGTGTCACTGAAATCACCGAGCAGCTTCACAGGGCCGGCTTTTCAAGATGGGGAAACGAAAGGGTCTACAACGGTAGATCAGGTGAGATGATGCGTTCTATGATATTCATGGGCCCAACTTTCTACCAGCGACTTGTCCACATGTCAGAGGACAAAGTCAAGTTCAGGAACACTGGACCAGTCCACCCGCTCACACGCCAGCCAGTTGCAGACAGGAAGAGATTTGGCGGGATAAAATTTGGAGAAATGGAGCGAGACTGCCTAATAGCTCACGGTGCATCAGCTAATCTGCATGAGCGTCTCTTCACTCTAAGTGACTCTTCTCAGATGCACATCTGCAGAAAATGTAAGACCTATGCGAATGTGATCGAGAGGACTCCAAGCAGTGGAAGAAAGATTAGAGGGCCATATTGTAGAGTCTGCGTATCCTCAGACCATGTGGTTAGGGTCTATGTTCCGTATGGAGCTAAGCTTCTGTGTCAGGAGCTGTTCAGCATGGGCATCACTCTCAACTTCGACACCAAGCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1172

Amino Acids

132.65

Weight (kDa)

8.62

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_1 PF04563 47 - 435 2.2e-36 RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 256 - 401 3.6e-11 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 479 - 537 1.3e-14 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 574 - 635 1e-20 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6 PF00562 702 - 1069 6.2e-106 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 1071 - 1169 5.9e-28 RNA polymerase Rpb2, domain 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AasI GACNNNNNNGTC 3 cut(s) 147, 473, 2269
AccB1I GGYRCC 1 cut(s) 1794
AccB7I CCANNNNNTGG 4 cut(s) 1633, 1706, 2729, 3371
AccBSI CCGCTC 1 cut(s) 3175
AccI GTMKAC 4 cut(s) 821, 1876, 2517, 3051
AccII CGCG 2 cut(s) 1480, 1775
AccIII TCCGGA 1 cut(s) 1185
AciI CCGC 9 cut(s) 1151, 1526, 1775, 1792, 2209, 2696, 2843, 3173, 3213
AclWI GGATC 4 cut(s) 36, 401, 894, 2803
AcoI YGGCCR 2 cut(s) 2305, 2755
AcsI RAATTY 6 cut(s) 449, 1028, 1857, 2686, 2794, 3221
AcuI CTGAAG 4 cut(s) 176, 353, 700, 2060
AcyI GRCGYC 2 cut(s) 1795, 2270
AfaI GTAC 4 cut(s) 801, 812, 2345, 2566
AfiI CCNNNNNNNGG 8 cut(s) 415, 1539, 1633, 1706, 2549, 2601, 2729, 3371
AflIII ACRYGT 3 cut(s) 1599, 2957, 3126
AhdI GACNNNNNGTC 1 cut(s) 1487
AjiI CACGTC 1 cut(s) 2960
AjnI CCWGG 4 cut(s) 1078, 1113, 1268, 2869
AjuI GAANNNNNNNTTGG 2 cut(s) 2805, 2837
Alw21I GWGCWC 3 cut(s) 674, 1206, 1625
Alw26I GTCTC 9 cut(s) 673, 715, 935, 1389, 1608, 1728, 2701, 3234, 3290
Alw44I GTGCAC 1 cut(s) 670
AlwI GGATC 4 cut(s) 36, 401, 894, 2803
AlwNI CAGNNNCTG 5 cut(s) 1459, 1760, 2038, 2233, 3472
Ama87I CYCGRG 2 cut(s) 1976, 2339
Aor13HI TCCGGA 1 cut(s) 1185
AoxI GGCC 7 cut(s) 1081, 1272, 2305, 2755, 3018, 3097, 3389
ApaI GGGCCC 1 cut(s) 3101
ApaLI GTGCAC 1 cut(s) 670
ApeKI GCWGC 7 cut(s) 113, 2211, 2230, 2693, 2888, 2939, 3007
ApoI RAATTY 6 cut(s) 449, 1028, 1857, 2686, 2794, 3221
ArsI GACNNNNNNTTYG 4 cut(s) 390, 422, 2857, 2889
Asp700I GAANNNNTTC 2 cut(s) 87, 972
AspLEI GCGC 3 cut(s) 753, 856, 1797
AspS9I GGNCC 8 cut(s) 720, 1272, 2074, 3018, 3097, 3098, 3161, 3389
AsuC2I CCSGG 1 cut(s) 2985
AvaI CYCGRG 2 cut(s) 1976, 2339
AvaII GGWCC 3 cut(s) 720, 2074, 3161
BaeGI GKGCMC 2 cut(s) 674, 3101
BalI TGGCCA 2 cut(s) 2307, 2757
BanI GGYRCC 1 cut(s) 1794
BanII GRGCYC 2 cut(s) 1206, 3101
BauI CACGAG 1 cut(s) 1812
BbsI GAAGAC 2 cut(s) 783, 2010
Bbv12I GWGCWC 3 cut(s) 674, 1206, 1625
BbvI GCAGC 7 cut(s) 100, 2198, 2242, 2680, 2875, 2926, 3019
BccI CCATC 9 cut(s) 896, 1071, 1292, 1396, 1675, 1813, 1962, 2461, 3027
BciT130I CCWGG 4 cut(s) 1080, 1115, 1270, 2871
BciVI GTATCC 2 cut(s) 1953, 3421
BclI TGATCA 2 cut(s) 607, 2608
BcnI CCSGG 1 cut(s) 2985
BcoDI GTCTC 9 cut(s) 673, 715, 935, 1389, 1608, 1728, 2701, 3234, 3290
BfaI CTAG 7 cut(s) 77, 363, 857, 1254, 1518, 2780, 2859
BfmI CTRYAG 2 cut(s) 92, 3322
BfoI RGCGCY 1 cut(s) 1798
BfuI GTATCC 2 cut(s) 1953, 3421
BisI GCNGC 8 cut(s) 114, 1793, 2212, 2231, 2694, 2889, 2940, 3008
BlpI GCTNAGC 1 cut(s) 3453
BlsI GCNGC 8 cut(s) 115, 1794, 2213, 2232, 2695, 2890, 2941, 3009
BmcAI AGTACT 2 cut(s) 801, 2566
Bme1390I CCNGG 5 cut(s) 1080, 1115, 1270, 2871, 2985
Bme18I GGWCC 3 cut(s) 720, 2074, 3161
BmeRI GACNNNNNGTC 1 cut(s) 1487
BmeT110I CYCGRG 2 cut(s) 1976, 2339
BmgBI CACGTC 1 cut(s) 2960
BmgT120I GGNCC 8 cut(s) 720, 1272, 2074, 3018, 3097, 3098, 3161, 3389
BmiI GGNNCC 5 cut(s) 231, 842, 1796, 2046, 3099
BmrFI CCNGG 5 cut(s) 1080, 1115, 1270, 2871, 2985
BmrI ACTGGG 3 cut(s) 63, 1549, 1747
BmuI ACTGGG 3 cut(s) 63, 1549, 1747
BpiI GAAGAC 2 cut(s) 783, 2010
BplI GAGNNNNNCTC 2 cut(s) 2918, 2950
BpmI CTGGAG 3 cut(s) 1230, 1395, 1551
Bpu1102I GCTNAGC 1 cut(s) 3453
BpuEI CTTGAG 3 cut(s) 362, 642, 2609
BpuMI CCSGG 1 cut(s) 2985
BsaBI GATNNNNATC 3 cut(s) 1823, 2188, 3317
BsaHI GRCGYC 2 cut(s) 1795, 2270
BsaI GGTCTC 1 cut(s) 1389
BsaJI CCNNGG 9 cut(s) 353, 701, 882, 1114, 1269, 1966, 2131, 2728, 2812
BsaWI WCCGGW 1 cut(s) 1185
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 1725, 1755
Bsc4I CCNNNNNNNGG 8 cut(s) 415, 1539, 1633, 1706, 2549, 2601, 2729, 3371
Bse118I RCCGGY 2 cut(s) 1499, 3020
Bse3DI GCAATG 2 cut(s) 1448, 2062
Bse8I GATNNNNATC 3 cut(s) 1823, 2188, 3317
BseAI TCCGGA 1 cut(s) 1185
BseBI CCWGG 4 cut(s) 1080, 1115, 1270, 2871
BseDI CCNNGG 9 cut(s) 353, 701, 882, 1114, 1269, 1966, 2131, 2728, 2812
BseGI GGATG 8 cut(s) 334, 499, 1057, 1336, 1387, 1690, 2205, 2476
BseJI GATNNNNATC 3 cut(s) 1823, 2188, 3317
BseLI CCNNNNNNNGG 8 cut(s) 415, 1539, 1633, 1706, 2549, 2601, 2729, 3371
BseMI GCAATG 2 cut(s) 1448, 2062
BseRI GAGGAG 2 cut(s) 833, 1486
BseSI GKGCMC 2 cut(s) 674, 3101
BseXI GCAGC 7 cut(s) 100, 2198, 2242, 2680, 2875, 2926, 3019
BseYI CCCAGC 1 cut(s) 2226
BsgI GTGCAG 2 cut(s) 1773, 2124
Bsh1236I CGCG 2 cut(s) 1480, 1775
BshFI GGCC 7 cut(s) 1083, 1274, 2307, 2757, 3020, 3099, 3391
BshNI GGYRCC 1 cut(s) 1794
BsiHKAI GWGCWC 3 cut(s) 674, 1206, 1625
BsiHKCI CYCGRG 2 cut(s) 1976, 2339
BsiSI CCGG 4 cut(s) 1186, 1500, 2984, 3021
BslFI GGGAC 5 cut(s) 1190, 1626, 2096, 2140, 2209
BslI CCNNNNNNNGG 8 cut(s) 415, 1539, 1633, 1706, 2549, 2601, 2729, 3371
BsmAI GTCTC 9 cut(s) 673, 715, 935, 1389, 1608, 1728, 2701, 3234, 3290
BsmBI CGTCTC 1 cut(s) 3290
BsmFI GGGAC 5 cut(s) 1190, 1626, 2096, 2140, 2209
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 7 cut(s) 1083, 1274, 2307, 2757, 3020, 3099, 3391
Bso31I GGTCTC 1 cut(s) 1389
BsoBI CYCGRG 2 cut(s) 1976, 2339
Bsp120I GGGCCC 1 cut(s) 3097
Bsp1286I GDGCHC 4 cut(s) 674, 1206, 1625, 3101
Bsp13I TCCGGA 1 cut(s) 1185
Bsp1720I GCTNAGC 1 cut(s) 3453
Bsp19I CCATGG 5 cut(s) 353, 701, 882, 1966, 2131
BspACI CCGC 9 cut(s) 1151, 1526, 1775, 1792, 2209, 2696, 2843, 3173, 3213
BspANI GGCC 7 cut(s) 1083, 1274, 2307, 2757, 3020, 3099, 3391
BspEI TCCGGA 1 cut(s) 1185
BspFNI CGCG 2 cut(s) 1480, 1775
BspLI GGNNCC 5 cut(s) 231, 842, 1796, 2046, 3099
BspMAI CTGCAG 2 cut(s) 96, 3326
BspPI GGATC 4 cut(s) 36, 401, 894, 2803
BspQI GCTCTTC 2 cut(s) 1661, 1668
BspT107I GGYRCC 1 cut(s) 1794
BspTNI GGTCTC 1 cut(s) 1389
BsrBI CCGCTC 1 cut(s) 3175
BsrDI GCAATG 2 cut(s) 1448, 2062
BsrFI RCCGGY 2 cut(s) 1499, 3020
BssAI RCCGGY 2 cut(s) 1499, 3020
BssECI CCNNGG 9 cut(s) 353, 701, 882, 1114, 1269, 1966, 2131, 2728, 2812
BssNI GRCGYC 2 cut(s) 1795, 2270
BssSI CACGAG 1 cut(s) 1812
BssT1I CCWWGG 7 cut(s) 353, 701, 882, 1966, 2131, 2728, 2812
Bst2BI CACGAG 1 cut(s) 1812
Bst2UI CCWGG 4 cut(s) 1080, 1115, 1270, 2871
BstACI GRCGYC 2 cut(s) 1795, 2270
BstAPI GCANNNNNTGC 2 cut(s) 1551, 2321
BstC8I GCNNGC 7 cut(s) 360, 916, 1206, 1790, 2847, 3022, 3185
BstDSI CCRYGG 5 cut(s) 353, 701, 882, 1966, 2131
BstF5I GGATG 8 cut(s) 334, 499, 1057, 1336, 1387, 1690, 2205, 2476
BstFNI CGCG 2 cut(s) 1480, 1775
BstH2I RGCGCY 1 cut(s) 1798
BstHHI GCGC 3 cut(s) 753, 856, 1797
BstMAI GTCTC 9 cut(s) 673, 715, 935, 1389, 1608, 1728, 2701, 3234, 3290
BstNI CCWGG 4 cut(s) 1080, 1115, 1270, 2871
BstNSI RCATGY 5 cut(s) 362, 1253, 1603, 1695, 3130
BstSCI CCNGG 5 cut(s) 1078, 1113, 1268, 2869, 2983
BstSFI CTRYAG 2 cut(s) 92, 3322
BstSLI GKGCMC 2 cut(s) 674, 3101
BstUI CGCG 2 cut(s) 1480, 1775
BstV1I GCAGC 7 cut(s) 100, 2198, 2242, 2680, 2875, 2926, 3019
BstV2I GAAGAC 2 cut(s) 783, 2010
BstX2I RGATCY 2 cut(s) 28, 886
BstYI RGATCY 2 cut(s) 28, 886
BsuI GTATCC 2 cut(s) 1953, 3421
BsuRI GGCC 7 cut(s) 1083, 1274, 2307, 2757, 3020, 3099, 3391
BtgI CCRYGG 5 cut(s) 353, 701, 882, 1966, 2131
BtgZI GCGATG 1 cut(s) 1311
BtrI CACGTC 1 cut(s) 2960
BtsCI GGATG 8 cut(s) 334, 499, 1057, 1336, 1387, 1690, 2205, 2476
BtsI GCAGTG 2 cut(s) 2164, 3376
Cac8I GCNNGC 7 cut(s) 360, 916, 1206, 1790, 2847, 3022, 3185
CaiI CAGNNNCTG 5 cut(s) 1459, 1760, 2038, 2233, 3472
CfoI GCGC 3 cut(s) 753, 856, 1797
Cfr10I RCCGGY 2 cut(s) 1499, 3020
Cfr13I GGNCC 8 cut(s) 720, 1272, 2074, 3018, 3097, 3098, 3161, 3389
CseI GACGC 2 cut(s) 2259, 3272
CsiI ACCWGGT 1 cut(s) 2869
Csp6I GTAC 4 cut(s) 800, 811, 2344, 2565
CviQI GTAC 4 cut(s) 800, 811, 2344, 2565
DinI GGCGCC 1 cut(s) 1796
DrdI GACNNNNNNGTC 3 cut(s) 147, 473, 2269
DriI GACNNNNNGTC 1 cut(s) 1487
DseDI GACNNNNNNGTC 3 cut(s) 147, 473, 2269
EaeI YGGCCR 2 cut(s) 2305, 2755
Eam1105I GACNNNNNGTC 1 cut(s) 1487
Ecl136II GAGCTC 1 cut(s) 1204
Eco130I CCWWGG 7 cut(s) 353, 701, 882, 1966, 2131, 2728, 2812
Eco147I AGGCCT 1 cut(s) 1083
Eco24I GRGCYC 2 cut(s) 1206, 3101
Eco31I GGTCTC 1 cut(s) 1389
Eco32I GATATC 1 cut(s) 1523
Eco47I GGWCC 3 cut(s) 720, 2074, 3161
Eco53kI GAGCTC 1 cut(s) 1204
Eco57I CTGAAG 4 cut(s) 176, 353, 700, 2060
Eco88I CYCGRG 2 cut(s) 1976, 2339
EcoICRI GAGCTC 1 cut(s) 1204
EcoRII CCWGG 4 cut(s) 1078, 1113, 1268, 2869
EcoRV GATATC 1 cut(s) 1523
EcoT14I CCWWGG 7 cut(s) 353, 701, 882, 1966, 2131, 2728, 2812
EcoT22I ATGCAT 1 cut(s) 2754
EcoT38I GRGCYC 2 cut(s) 1206, 3101
EgeI GGCGCC 1 cut(s) 1796
EheI GGCGCC 1 cut(s) 1796
ErhI CCWWGG 7 cut(s) 353, 701, 882, 1966, 2131, 2728, 2812
Esp3I CGTCTC 1 cut(s) 3290
FalI AAGNNNNNCTT 2 cut(s) 3289, 3321
FaqI GGGAC 5 cut(s) 1190, 1626, 2096, 2140, 2209
FauI CCCGC 4 cut(s) 1144, 2850, 3180, 3206
FauNDI CATATG 1 cut(s) 1000
FbaI TGATCA 2 cut(s) 607, 2608
FblI GTMKAC 4 cut(s) 821, 1876, 2517, 3051
Fnu4HI GCNGC 8 cut(s) 114, 1793, 2212, 2231, 2694, 2889, 2940, 3008
FokI GGATG 8 cut(s) 341, 506, 1064, 1343, 1374, 1697, 2192, 2483
FriOI GRGCYC 2 cut(s) 1206, 3101
Fsp4HI GCNGC 8 cut(s) 114, 1793, 2212, 2231, 2694, 2889, 2940, 3008
FspBI CTAG 7 cut(s) 77, 363, 857, 1254, 1518, 2780, 2859
GlaI GCGC 3 cut(s) 752, 855, 1796
GluI GCNGC 8 cut(s) 114, 1793, 2212, 2231, 2694, 2889, 2940, 3008
GsaI CCCAGC 1 cut(s) 2230
GsuI CTGGAG 3 cut(s) 1230, 1395, 1551
HaeII RGCGCY 1 cut(s) 1798
HaeIII GGCC 7 cut(s) 1083, 1274, 2307, 2757, 3020, 3099, 3391
HapII CCGG 4 cut(s) 1186, 1500, 2984, 3021
HgaI GACGC 2 cut(s) 2259, 3272
HhaI GCGC 3 cut(s) 753, 856, 1797
Hin1I GRCGYC 2 cut(s) 1795, 2270
Hin6I GCGC 3 cut(s) 751, 854, 1795
HinP1I GCGC 3 cut(s) 751, 854, 1795
HincII GTYRAC 3 cut(s) 822, 1563, 2876
HindII GTYRAC 3 cut(s) 822, 1563, 2876
HindIII AAGCTT 2 cut(s) 969, 3455
HpaII CCGG 4 cut(s) 1186, 1500, 2984, 3021
Hpy99I CGWCG 1 cut(s) 2275
HpyCH4IV ACGT 2 cut(s) 2389, 2959
HpySE526I ACGT 2 cut(s) 2389, 2959
Hsp92I GRCGYC 2 cut(s) 1795, 2270
HspAI GCGC 3 cut(s) 751, 854, 1795
KasI GGCGCC 1 cut(s) 1794
Kpn2I TCCGGA 1 cut(s) 1185
KroI GCCGGC 1 cut(s) 3020
KroNI GCCGGC 1 cut(s) 3022
Ksp22I TGATCA 2 cut(s) 607, 2608
LguI GCTCTTC 2 cut(s) 1661, 1668
LmnI GCTCC 6 cut(s) 337, 846, 1376, 3235, 3449, 3469
Lsp1109I GCAGC 7 cut(s) 100, 2198, 2242, 2680, 2875, 2926, 3019
MabI ACCWGGT 1 cut(s) 2869
MaeI CTAG 7 cut(s) 77, 363, 857, 1254, 1518, 2780, 2859
MaeII ACGT 2 cut(s) 2389, 2959
MaeIII GTNAC 3 cut(s) 298, 2989, 3299
MbiI CCGCTC 1 cut(s) 3175
MfeI CAATTG 1 cut(s) 2316
MflI RGATCY 2 cut(s) 28, 886
MhlI GDGCHC 4 cut(s) 674, 1206, 1625, 3101
MlsI TGGCCA 2 cut(s) 2307, 2757
MluNI TGGCCA 2 cut(s) 2307, 2757
Mly113I GGCGCC 1 cut(s) 1795
MlyI GAGTC 7 cut(s) 1450, 1646, 2441, 2606, 3296, 3355, 3411
MmeI TCCRAC 4 cut(s) 1489, 1723, 1909, 2253
Mox20I TGGCCA 2 cut(s) 2307, 2757
Mph1103I ATGCAT 1 cut(s) 2754
MroI TCCGGA 1 cut(s) 1185
MroNI GCCGGC 1 cut(s) 3020
MroXI GAANNNNTTC 2 cut(s) 87, 972
MscI TGGCCA 2 cut(s) 2307, 2757
MseI TTAA 4 cut(s) 438, 995, 1781, 2283
MslI CAYNNNNRTG 3 cut(s) 20, 2130, 2366
Msp20I TGGCCA 2 cut(s) 2307, 2757
MspA1I CMGCKG 2 cut(s) 2211, 2233
MspI CCGG 4 cut(s) 1186, 1500, 2984, 3021
MspR9I CCNGG 5 cut(s) 1080, 1115, 1270, 2871, 2985
MunI CAATTG 1 cut(s) 2316
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 4 cut(s) 1080, 1115, 1270, 2871
MvnI CGCG 2 cut(s) 1480, 1775
NaeI GCCGGC 1 cut(s) 3022
NarI GGCGCC 1 cut(s) 1795
NciI CCSGG 1 cut(s) 2985
NcoI CCATGG 5 cut(s) 353, 701, 882, 1966, 2131
NdeI CATATG 1 cut(s) 1000
NgoMIV GCCGGC 1 cut(s) 3020
NlaIV GGNNCC 5 cut(s) 231, 842, 1796, 2046, 3099
NmuCI GTSAC 3 cut(s) 298, 2989, 3299
NsiI ATGCAT 1 cut(s) 2754
NspI RCATGY 5 cut(s) 362, 1253, 1603, 1695, 3130
PaeI GCATGC 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 1976
PceI AGGCCT 1 cut(s) 1083
PciI ACATGT 2 cut(s) 1599, 3126
PciSI GCTCTTC 2 cut(s) 1661, 1668
PctI GAATGC 1 cut(s) 525
PdiI GCCGGC 1 cut(s) 3022
PdmI GAANNNNTTC 2 cut(s) 87, 972
PflFI GACNNNGTC 1 cut(s) 3140
PflMI CCANNNNNTGG 4 cut(s) 1633, 1706, 2729, 3371
PkrI GCNGC 8 cut(s) 115, 1794, 2213, 2232, 2695, 2890, 2941, 3009
PleI GAGTC 7 cut(s) 1450, 1645, 2441, 2605, 3296, 3355, 3410
PluTI GGCGCC 1 cut(s) 1798
PpsI GAGTC 7 cut(s) 1450, 1645, 2441, 2605, 3296, 3355, 3410
PscI ACATGT 2 cut(s) 1599, 3126
PsiI TTATAA 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 1206
Psp6I CCWGG 4 cut(s) 1078, 1113, 1268, 2869
PspFI CCCAGC 1 cut(s) 2226
PspGI CCWGG 4 cut(s) 1078, 1113, 1268, 2869
PspN4I GGNNCC 5 cut(s) 231, 842, 1796, 2046, 3099
PspOMI GGGCCC 1 cut(s) 3097
PspPI GGNCC 8 cut(s) 720, 1272, 2074, 3018, 3097, 3098, 3161, 3389
PsrI GAACNNNNNNTAC 4 cut(s) 365, 397, 2386, 2418
PstI CTGCAG 2 cut(s) 96, 3326
PstNI CAGNNNCTG 5 cut(s) 1459, 1760, 2038, 2233, 3472
PsuI RGATCY 2 cut(s) 28, 886
PsyI GACNNNGTC 1 cut(s) 3140
PvuII CAGCTG 1 cut(s) 2233
RsaI GTAC 4 cut(s) 801, 812, 2345, 2566
RsaNI GTAC 4 cut(s) 800, 811, 2344, 2565
RseI CAYNNNNRTG 3 cut(s) 20, 2130, 2366
SacI GAGCTC 1 cut(s) 1206
SalI GTCGAC 1 cut(s) 820
SapI GCTCTTC 2 cut(s) 1661, 1668
SaqAI TTAA 4 cut(s) 438, 995, 1781, 2283
SatI GCNGC 8 cut(s) 114, 1793, 2212, 2231, 2694, 2889, 2940, 3008
Sau96I GGNCC 8 cut(s) 720, 1272, 2074, 3018, 3097, 3098, 3161, 3389
ScaI AGTACT 2 cut(s) 801, 2566
SchI GAGTC 7 cut(s) 1450, 1646, 2441, 2606, 3296, 3355, 3411
ScrFI CCNGG 5 cut(s) 1080, 1115, 1270, 2871, 2985
SduI GDGCHC 4 cut(s) 674, 1206, 1625, 3101
SexAI ACCWGGT 1 cut(s) 2869
SfcI CTRYAG 2 cut(s) 92, 3322
SfoI GGCGCC 1 cut(s) 1796
Sfr274I CTCGAG 1 cut(s) 1976
SinI GGWCC 3 cut(s) 720, 2074, 3161
SlaI CTCGAG 1 cut(s) 1976
SmiMI CAYNNNNRTG 3 cut(s) 20, 2130, 2366
SmlI CTYRAG 4 cut(s) 341, 657, 1976, 2624
SmoI CTYRAG 4 cut(s) 341, 657, 1976, 2624
SphI GCATGC 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 1083
SsiI CCGC 9 cut(s) 1151, 1526, 1775, 1792, 2209, 2696, 2843, 3173, 3213
SspDI GGCGCC 1 cut(s) 1794
SspMI CTAG 7 cut(s) 77, 363, 857, 1254, 1518, 2780, 2859
SstI GAGCTC 1 cut(s) 1206
StuI AGGCCT 1 cut(s) 1083
StyD4I CCNGG 5 cut(s) 1078, 1113, 1268, 2869, 2983
StyI CCWWGG 7 cut(s) 353, 701, 882, 1966, 2131, 2728, 2812
TaiI ACGT 2 cut(s) 2392, 2962
TaqI TCGA 7 cut(s) 42, 477, 821, 1108, 1977, 3354, 3501
TatI WGTACW 3 cut(s) 799, 810, 2564
TauI GCSGC 1 cut(s) 1795
Tru1I TTAA 4 cut(s) 438, 995, 1781, 2283
Tru9I TTAA 4 cut(s) 438, 995, 1781, 2283
TseFI GTSAC 3 cut(s) 298, 2989, 3299
TseI GCWGC 7 cut(s) 113, 2211, 2230, 2693, 2888, 2939, 3007
Tsp45I GTSAC 3 cut(s) 298, 2989, 3299
TspDTI ATGAA 8 cut(s) 166, 733, 2324, 2370, 2384, 2536, 2691, 3082
TspGWI ACGGA 2 cut(s) 2390, 3432
Tth111I GACNNNGTC 1 cut(s) 3140
Van91I CCANNNNNTGG 4 cut(s) 1633, 1706, 2729, 3371
VneI GTGCAC 1 cut(s) 670
VpaK11BI GGWCC 3 cut(s) 720, 2074, 3161
XapI RAATTY 6 cut(s) 449, 1028, 1857, 2686, 2794, 3221
XceI RCATGY 5 cut(s) 362, 1253, 1603, 1695, 3130
XcmI CCANNNNNNNNNTGG 1 cut(s) 2177
XhoI CTCGAG 1 cut(s) 1976
XmiI GTMKAC 4 cut(s) 821, 1876, 2517, 3051
XmnI GAANNNNTTC 2 cut(s) 87, 972
XspI CTAG 7 cut(s) 77, 363, 857, 1254, 1518, 2780, 2859
ZrmI AGTACT 2 cut(s) 801, 2566
Zsp2I ATGCAT 1 cut(s) 2754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.