Rh5CG320900

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002206
Physical Location & Seq
Reverse (-)
35532365 .. 35535363
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG320900.1

Sequence Viewer

Length: 1566 bp
ATGGCAAAGGCTTTGCAGAGAGACCTTTGTGGTTACCGTGTTGTCCGCCCGGTTGAGCAATATATAGATGCTACAATAGTAACTAATGGCATCTCCAGAGCATTCTCAACAGGAGCGTTGTGTCATCCTTTCAAGACTATGGAGAGGATATCTGGTGTGGTGGTAAATGTTGGGAAAACAAATCCACTGCAAACAATGGTAGATATGAGGAAGACACGCCTCCAAGTTCAAATACTTCGAGATGCCAGATATCCGCGTACTTCTCACTGGGGTAGGGCTTTCTTTATCTCAACCCCAGATGGTGAGAATTGTGGGCTTGTGAAAAATTTGGCTACCACTGCACCGATAAGTACAAACATATTGGAGCCCATATTGCCCGAGTTTTTCTCTTGTGGCATGGAGGAGCTGGTAGATGATACTTCAACATCACTTGATGGGAAGGATAAAGTTTTTCTCAATGGGGATTGGGTTGGCGTTTGTGAAGATTCCGGTGATTTTGTCACGAGACTAAGGACACTGAGACGCAGGAAAAAGTTGCTACAGCAGATGGAAATCAAAAGAGATGAGCAGCTCTGGGAAGTACGAATATATTCTGATGCTGGAAGGATTCTACGTCCTTTCCTGGTAGTTAAGAATTTGAATAAGATTAAAGCATCCAAGGGAAAAAAACACACGTTCCAAGATCTTCTTGGCAATGGAATAATCGAGCTCATTGGAGCTGAAGAAGAAGAGGATTGCTGTACAGCAAGGGATGTCAGGCATCTATTTATGGAAGACAATGGGAAGTCAGCAGTCAAGTACACACACTGTGACCTGGACCTGTCATTTTTGTTAGGCTTAAGTTGTGGTATCATTCCCTTTTCAAACCATGATCATGCAAGGAGGGTTCTATACCAGTCTCAGAAGCACTCTCAGCAGGTCATTGGTTTTTCTACCACAAATCCTAACCACAGAGTGGTTACTCTGTCTCACCAACTACGCTACCCTCAGAGGCCGCTTTTTTGTAATATGATATCTGATTGCCTTGGCCAACCAGGAAACCCAGTGAGCCATAACAGAGTTATGTCCAAGCCTGAATACTTTAATGGCCAAAATGCAATTGTTGCATTCAATGTGCACCTAGGATATAACCAAGAAGATTCTATTGTGATGAACCGCGCATCTGTGCAACGTGGCATGTTCAAATCTGAGCACATACGGAGCTACAAGGCTGAAGCTGAAAACAAGTTCTCATTGGGAAAAAGGAGGAATCCAGATGACTGTATAAACTTTGGCAAAATACAGAGTAGATTTGGAAGTGTTGACAGCCTTGATGATGATGGATTCCCTCGTATAGGTGCATATCTGCTGAGTGGTGATATTATTATTGGGAGGTGCAGTGAATCTGGTACTGATCATAGCATAAAACTGAGGCATACTGAAAGAGGAAATGTTCAGAAGGTTGTACTTTCCTCTAATGACGAGGGAAAGAATTTTGGTGTTGTATCCTTAAGACAGGTTTGTTCTCCTTGTCTTGGAGACAAGTTCTCAAGCATGCATGGGTGTCCTAGGCTTTTTGGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

521

Amino Acids

58.6

Weight (kDa)

8.9

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_3 PF04565 59 - 115 4.4e-11 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 150 - 211 1.1e-20 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5 PF04567 226 - 273 1.3e-07 RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 282 - 514 1.3e-41 RNA polymerase Rpb2, domain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 907
AccB7I CCANNNNNTGG 1 cut(s) 955
AccII CGCG 2 cut(s) 256, 1158
AciI CCGC 4 cut(s) 46, 254, 995, 1156
AcoI YGGCCR 2 cut(s) 1027, 1087
AcsI RAATTY 3 cut(s) 325, 634, 1471
AcuI CTGAAG 2 cut(s) 741, 1233
AdeI CACNNNGTG 2 cut(s) 809, 955
AfaI GTAC 7 cut(s) 259, 352, 582, 742, 800, 1390, 1446
AfiI CCNNNNNNNGG 3 cut(s) 955, 1334, 1514
AflII CTTAAG 2 cut(s) 838, 1489
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 7 cut(s) 133, 230, 423, 640, 864, 1111, 1183
AjnI CCWGG 3 cut(s) 621, 813, 1033
AluBI AGCT 6 cut(s) 406, 571, 709, 719, 1203, 1217
AluI AGCT 6 cut(s) 406, 571, 709, 719, 1203, 1217
Alw21I GWGCWC 3 cut(s) 711, 1119, 1194
Alw26I GTCTC 6 cut(s) 15, 499, 514, 903, 972, 1512
Alw44I GTGCAC 1 cut(s) 1115
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 3 cut(s) 992, 1027, 1087
ApaLI GTGCAC 1 cut(s) 1115
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 3 cut(s) 325, 634, 1471
Asp700I GAANNNNTTC 1 cut(s) 589
AspA2I CCTAGG 2 cut(s) 1120, 1547
AspLEI GCGC 1 cut(s) 1160
AspS9I GGNCC 1 cut(s) 817
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 4 cut(s) 314, 503, 962, 1367
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 1 cut(s) 817
AvrII CCTAGG 2 cut(s) 1120, 1547
BaeGI GKGCMC 1 cut(s) 1119
BalI TGGCCA 2 cut(s) 1029, 1089
BanII GRGCYC 2 cut(s) 369, 711
BauI CACGAG 1 cut(s) 502
BbsI GAAGAC 2 cut(s) 218, 780
Bbv12I GWGCWC 3 cut(s) 711, 1119, 1194
BbvI GCAGC 1 cut(s) 580
BccI CCATC 4 cut(s) 293, 428, 541, 1313
BciT130I CCWGG 3 cut(s) 623, 815, 1035
BciVI GTATCC 1 cut(s) 1495
BclI TGATCA 2 cut(s) 871, 1393
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 6 cut(s) 15, 499, 514, 903, 972, 1512
BfaI CTAG 2 cut(s) 1121, 1548
BfmI CTRYAG 1 cut(s) 539
BfrI CTTAAG 2 cut(s) 838, 1489
BfuAI ACCTGC 1 cut(s) 907
BfuI GTATCC 1 cut(s) 1495
BglII AGATCT 1 cut(s) 682
BisI GCNGC 2 cut(s) 569, 995
BlnI CCTAGG 2 cut(s) 1120, 1547
BlsI GCNGC 2 cut(s) 570, 996
Bme1390I CCNGG 4 cut(s) 50, 623, 815, 1035
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 4 cut(s) 50, 623, 815, 1035
BmrI ACTGGG 2 cut(s) 277, 1037
BmsI GCATC 7 cut(s) 58, 99, 232, 586, 662, 769, 1169
BmuI ACTGGG 2 cut(s) 277, 1037
BpiI GAAGAC 2 cut(s) 218, 780
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 1513
BpuMI CCSGG 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 4 cut(s) 657, 1024, 1120, 1547
BsaWI WCCGGW 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 1363, 1393
Bsc4I CCNNNNNNNGG 3 cut(s) 955, 1334, 1514
Bse1I ACTGG 3 cut(s) 272, 895, 1043
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 3 cut(s) 623, 815, 1035
BseDI CCNNGG 4 cut(s) 657, 1024, 1120, 1547
BseGI GGATG 3 cut(s) 124, 653, 757
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 3 cut(s) 955, 1334, 1514
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 7 cut(s) 509, 914, 926, 1001, 1179, 1340, 1400
BseNI ACTGG 3 cut(s) 272, 895, 1043
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 1119
BseXI GCAGC 1 cut(s) 580
BsgI GTGCAG 2 cut(s) 324, 1396
Bsh1236I CGCG 2 cut(s) 256, 1158
BshFI GGCC 3 cut(s) 994, 1029, 1089
BsiHKAI GWGCWC 3 cut(s) 711, 1119, 1194
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 2 cut(s) 50, 489
BslI CCNNNNNNNGG 3 cut(s) 955, 1334, 1514
BsmAI GTCTC 6 cut(s) 15, 499, 514, 903, 972, 1512
BsmBI CGTCTC 1 cut(s) 514
BsmI GAATGC 2 cut(s) 101, 1106
BsnI GGCC 3 cut(s) 994, 1029, 1089
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 4 cut(s) 369, 711, 1119, 1194
Bsp1407I TGTACA 1 cut(s) 740
Bsp143I GATC 3 cut(s) 682, 871, 1393
BspACI CCGC 4 cut(s) 46, 254, 995, 1156
BspANI GGCC 3 cut(s) 994, 1029, 1089
BspCNI CTCAG 7 cut(s) 510, 913, 925, 1000, 1180, 1341, 1401
BspFNI CGCG 2 cut(s) 256, 1158
BspLI GGNNCC 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 907
BspTI CTTAAG 2 cut(s) 838, 1489
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 700
BsrGI TGTACA 1 cut(s) 740
BsrI ACTGG 3 cut(s) 272, 895, 1043
BssECI CCNNGG 4 cut(s) 657, 1024, 1120, 1547
BssMI GATC 3 cut(s) 682, 871, 1393
BssSI CACGAG 1 cut(s) 502
BssT1I CCWWGG 4 cut(s) 657, 1024, 1120, 1547
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 3 cut(s) 623, 815, 1035
Bst4CI ACNGT 3 cut(s) 38, 809, 1262
Bst6I CTCTTC 1 cut(s) 723
BstAFI CTTAAG 2 cut(s) 838, 1489
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 740
BstC8I GCNNGC 1 cut(s) 1535
BstDEI CTNAG 8 cut(s) 509, 518, 900, 912, 987, 1188, 1349, 1409
BstEII GGTNACC 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 1332
BstF5I GGATG 3 cut(s) 124, 653, 757
BstFNI CGCG 2 cut(s) 256, 1158
BstHHI GCGC 1 cut(s) 1160
BstKTI GATC 3 cut(s) 685, 874, 1396
BstMAI GTCTC 6 cut(s) 15, 499, 514, 903, 972, 1512
BstMBI GATC 3 cut(s) 682, 871, 1393
BstMWI GCNNNNNNNGC 4 cut(s) 338, 373, 913, 1103
BstNI CCWGG 3 cut(s) 623, 815, 1035
BstNSI RCATGY 2 cut(s) 1180, 1537
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 4 cut(s) 48, 621, 813, 1033
BstSFI CTRYAG 1 cut(s) 539
BstSLI GKGCMC 1 cut(s) 1119
BstUI CGCG 2 cut(s) 256, 1158
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 2 cut(s) 218, 780
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BsuI GTATCC 1 cut(s) 1495
BsuRI GGCC 3 cut(s) 994, 1029, 1089
BtsCI GGATG 3 cut(s) 124, 653, 757
BtsI GCAGTG 3 cut(s) 185, 336, 1384
BtsIMutI CAGTG 7 cut(s) 185, 265, 336, 515, 805, 1050, 1384
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 1 cut(s) 1535
CfoI GCGC 1 cut(s) 1160
Cfr13I GGNCC 1 cut(s) 817
CseI GACGC 1 cut(s) 531
Csp6I GTAC 7 cut(s) 258, 351, 581, 741, 799, 1389, 1445
CviAII CATG 6 cut(s) 397, 869, 875, 1177, 1534, 1538
CviQI GTAC 7 cut(s) 258, 351, 581, 741, 799, 1389, 1445
DdeI CTNAG 8 cut(s) 509, 518, 900, 912, 987, 1188, 1349, 1409
DpnI GATC 3 cut(s) 684, 873, 1395
DpnII GATC 3 cut(s) 682, 871, 1393
DraIII CACNNNGTG 2 cut(s) 809, 955
EaeI YGGCCR 2 cut(s) 1027, 1087
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 709
Eco130I CCWWGG 4 cut(s) 657, 1024, 1120, 1547
Eco24I GRGCYC 2 cut(s) 369, 711
Eco31I GGTCTC 1 cut(s) 15
Eco32I GATATC 3 cut(s) 150, 251, 1014
Eco47I GGWCC 1 cut(s) 817
Eco53kI GAGCTC 1 cut(s) 709
Eco57I CTGAAG 2 cut(s) 741, 1233
Eco88I CYCGRG 1 cut(s) 377
Eco91I GGTNACC 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 709
EcoNI CCTNNNNNAGG 1 cut(s) 1332
EcoO65I GGTNACC 1 cut(s) 32
EcoRII CCWGG 3 cut(s) 621, 813, 1033
EcoRV GATATC 3 cut(s) 150, 251, 1014
EcoT14I CCWWGG 4 cut(s) 657, 1024, 1120, 1547
EcoT22I ATGCAT 1 cut(s) 1539
EcoT38I GRGCYC 2 cut(s) 369, 711
ErhI CCWWGG 4 cut(s) 657, 1024, 1120, 1547
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 6 cut(s) 400, 872, 878, 1180, 1537, 1541
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FatI CATG 6 cut(s) 396, 868, 874, 1176, 1533, 1537
FbaI TGATCA 2 cut(s) 871, 1393
Fnu4HI GCNGC 2 cut(s) 569, 995
FokI GGATG 3 cut(s) 111, 640, 764
FriOI GRGCYC 2 cut(s) 369, 711
Fsp4HI GCNGC 2 cut(s) 569, 995
FspBI CTAG 2 cut(s) 1121, 1548
GlaI GCGC 1 cut(s) 1159
GluI GCNGC 2 cut(s) 569, 995
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 3 cut(s) 994, 1029, 1089
HapII CCGG 2 cut(s) 50, 489
HgaI GACGC 1 cut(s) 531
HhaI GCGC 1 cut(s) 1160
Hin1II CATG 6 cut(s) 400, 872, 878, 1180, 1537, 1541
Hin6I GCGC 1 cut(s) 1158
HinP1I GCGC 1 cut(s) 1158
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HinfI GANTC 7 cut(s) 485, 607, 1139, 1249, 1323, 1382, 1560
HpaII CCGG 2 cut(s) 50, 489
HphI GGTGA 4 cut(s) 314, 503, 962, 1367
Hpy166II GTNNAC 3 cut(s) 801, 1117, 1303
Hpy188I TCNGA 7 cut(s) 595, 903, 990, 1018, 1189, 1437, 1565
Hpy188III TCNNGA 5 cut(s) 96, 133, 239, 502, 1253
Hpy8I GTNNAC 3 cut(s) 801, 1117, 1303
HpyAV CCTTC 3 cut(s) 433, 597, 1432
HpyCH4III ACNGT 3 cut(s) 38, 809, 1262
HpyCH4IV ACGT 3 cut(s) 613, 674, 1171
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 373, 913, 1103
HpyF3I CTNAG 8 cut(s) 509, 518, 900, 912, 987, 1188, 1349, 1409
HpySE526I ACGT 3 cut(s) 613, 674, 1171
Hsp92II CATG 6 cut(s) 400, 872, 878, 1180, 1537, 1541
HspAI GCGC 1 cut(s) 1158
Ksp22I TGATCA 2 cut(s) 871, 1393
Kzo9I GATC 3 cut(s) 682, 871, 1393
LmnI GCTCC 5 cut(s) 113, 364, 403, 716, 1200
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 7 cut(s) 58, 99, 232, 586, 662, 769, 1169
MaeI CTAG 2 cut(s) 1121, 1548
MaeII ACGT 3 cut(s) 613, 674, 1171
MaeIII GTNAC 5 cut(s) 32, 79, 499, 809, 958
MalI GATC 3 cut(s) 684, 873, 1395
MboI GATC 3 cut(s) 682, 871, 1393
MboII GAAGA 8 cut(s) 223, 494, 677, 734, 737, 740, 785, 1148
MfeI CAATTG 1 cut(s) 1098
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 4 cut(s) 369, 711, 1119, 1194
MlsI TGGCCA 2 cut(s) 1029, 1089
MluCI AATT 5 cut(s) 307, 325, 634, 1098, 1471
MluNI TGGCCA 2 cut(s) 1029, 1089
Mox20I TGGCCA 2 cut(s) 1029, 1089
Mph1103I ATGCAT 1 cut(s) 1539
MroXI GAANNNNTTC 1 cut(s) 589
MscI TGGCCA 2 cut(s) 1029, 1089
MseI TTAA 5 cut(s) 630, 648, 839, 1083, 1490
MslI CAYNNNNRTG 1 cut(s) 873
Msp20I TGGCCA 2 cut(s) 1029, 1089
MspCI CTTAAG 2 cut(s) 838, 1489
MspI CCGG 2 cut(s) 50, 489
MspR9I CCNGG 4 cut(s) 50, 623, 815, 1035
MunI CAATTG 1 cut(s) 1098
Mva1269I GAATGC 2 cut(s) 101, 1106
MvaI CCWGG 3 cut(s) 623, 815, 1035
MvnI CGCG 2 cut(s) 256, 1158
MwoI GCNNNNNNNGC 4 cut(s) 338, 373, 913, 1103
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 682, 871, 1393
NlaIII CATG 6 cut(s) 400, 872, 878, 1180, 1537, 1541
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 499, 809
NsiI ATGCAT 1 cut(s) 1539
NspI RCATGY 2 cut(s) 1180, 1537
PaeI GCATGC 1 cut(s) 1537
PctI GAATGC 2 cut(s) 101, 1106
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 6 cut(s) 485, 607, 1139, 1249, 1323, 1382
PflMI CCANNNNNTGG 1 cut(s) 955
PkrI GCNGC 2 cut(s) 570, 996
Psp124BI GAGCTC 1 cut(s) 711
Psp6I CCWGG 3 cut(s) 621, 813, 1033
PspEI GGTNACC 1 cut(s) 32
PspGI CCWGG 3 cut(s) 621, 813, 1033
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 817
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 7 cut(s) 259, 352, 582, 742, 800, 1390, 1446
RsaNI GTAC 7 cut(s) 258, 351, 581, 741, 799, 1389, 1445
RseI CAYNNNNRTG 1 cut(s) 873
SacI GAGCTC 1 cut(s) 711
SaqAI TTAA 5 cut(s) 630, 648, 839, 1083, 1490
SatI GCNGC 2 cut(s) 569, 995
Sau3AI GATC 3 cut(s) 682, 871, 1393
Sau96I GGNCC 1 cut(s) 817
ScrFI CCNGG 4 cut(s) 50, 623, 815, 1035
SduI GDGCHC 4 cut(s) 369, 711, 1119, 1194
SfaNI GCATC 7 cut(s) 58, 99, 232, 586, 662, 769, 1169
SfcI CTRYAG 1 cut(s) 539
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 3 cut(s) 838, 1489, 1528
SmoI CTYRAG 3 cut(s) 838, 1489, 1528
SphI GCATGC 1 cut(s) 1537
Sse9I AATT 5 cut(s) 307, 325, 634, 1098, 1471
SsiI CCGC 4 cut(s) 46, 254, 995, 1156
SspMI CTAG 2 cut(s) 1121, 1548
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 4 cut(s) 48, 621, 813, 1033
StyI CCWWGG 4 cut(s) 657, 1024, 1120, 1547
TaaI ACNGT 3 cut(s) 38, 809, 1262
TaiI ACGT 3 cut(s) 616, 677, 1174
TaqI TCGA 2 cut(s) 238, 705
TasI AATT 5 cut(s) 307, 325, 634, 1098, 1471
TatI WGTACW 4 cut(s) 350, 740, 798, 1444
TauI GCSGC 1 cut(s) 997
TfiI GAWTC 6 cut(s) 485, 607, 1139, 1249, 1323, 1382
Tru1I TTAA 5 cut(s) 630, 648, 839, 1083, 1490
Tru9I TTAA 5 cut(s) 630, 648, 839, 1083, 1490
TscAI CASTG 7 cut(s) 192, 272, 343, 522, 812, 1050, 1384
TseFI GTSAC 2 cut(s) 499, 809
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 2 cut(s) 499, 809
TspDTI ATGAA 1 cut(s) 1166
TspGWI ACGGA 1 cut(s) 1213
TspRI CASTG 7 cut(s) 192, 272, 343, 522, 812, 1050, 1384
Van91I CCANNNNNTGG 1 cut(s) 955
Vha464I CTTAAG 2 cut(s) 838, 1489
VneI GTGCAC 1 cut(s) 1115
VpaK11BI GGWCC 1 cut(s) 817
XagI CCTNNNNNAGG 1 cut(s) 1332
XapI RAATTY 3 cut(s) 325, 634, 1471
XceI RCATGY 2 cut(s) 1180, 1537
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmaJI CCTAGG 2 cut(s) 1120, 1547
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 2 cut(s) 1121, 1548
Zsp2I ATGCAT 1 cut(s) 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.