Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039596.1

Orthogroup ID

OG0002206

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 396

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039596.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

cttttacagaccttcagaggccacaggaaatgtgacaacagagaagaattgaagaacaagaggtttcacttggctggtgagcgtctagagcgagagctgaaggcacacgtaggacatgcaggaaggcgcatggcaaaggctctgcagagagacctttgtggtgaccgtgttgtccgcctggttgagcaatatctaaatgctacagtagtaactaatggcatctccagagcattctcaactggagcgtggtgtcatcctttcaagaggatggagaggatgtctggtgtggtggtaaatgttgggaaaacaattccactgcaaacaatggtagatatgaggaagacacgcctccaagttcaatacacggggaagcttggagatgccagatatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

131

Amino Acids

15.09

Weight (kDa)

10.57

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18090 AT3G18090 AT3G18090 AT3G23780 AT3G23780
fragaria_vesca	FvH4_1g06870 FvH4_1g06870
malus_domestica	MD08G1057300.v1.1 MD15G1040100.v1.1
prunus_persica	Prupe.1G393500_v2.0.a1
pyrus_communis	pycom08g04680 pycom15g03760
rosa_chinensis	RchiOBHm_Chr2g0092681 RchiOBHm_Chr5g0042241 RchiOBHm_Chr5g0042281
rosa_laevigata	RLG00000016333 RLG00000034111 RLG00000034115
rosa_multiflora	Rmu_sc0001132.1_g000021 Rmu_sc0001715.1_g000028 Rmu_sc0017518.1_g000004 Rmu_sc0039596.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038430 Rroxscaffold_2G00148910
rosa_rugosa	Rorug02G0028500 Rorug02G0028600 Rorug02G0028700 Rorug05G0198900
rosa_samantha	Rh2AG074500 Rh2BG075400 Rh2CG077200 Rh2DG073100 Rh5AG283600 Rh5AG284200 Rh5AG285200 Rh5BG289600 Rh5BG290100 Rh5CG320900 Rh5DG298900 Rh5DG299300
rosa_wichuraiana	Rw0G001490 Rw0G001760 Rw2G005860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AciI	CCGC	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	52, 262, 359
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	97, 373
AluI	AGCT	2 cut(s)	97, 373
Alw26I	GTCTC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	89, 173
BbsI	GAAGAC	1 cut(s)	347
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	143, 201
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	228, 370
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	2 cut(s)	208, 261
BsaAI	YACGTR	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	179
BseGI	GGATG	3 cut(s)	253, 273, 282
BseNI	ACTGG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	167, 205
BstBAI	YACGTR	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	253, 273, 282
BstHHI	GCGC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	2 cut(s)	143, 201
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	253, 273, 282
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	129
CseI	GACGC	1 cut(s)	71
CviAII	CATG	2 cut(s)	116, 130
CviJI	RGCY	5 cut(s)	21, 74, 97, 140, 373
CviKI_1	RGCY	5 cut(s)	21, 74, 97, 140, 373
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	389
FaeI	CATG	2 cut(s)	119, 133
FaiI	YATR	3 cut(s)	117, 131, 335
FatI	CATG	2 cut(s)	115, 129
FokI	GGATG	3 cut(s)	240, 280, 289
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	128
GsuI	CTGGAG	2 cut(s)	208, 261
HaeIII	GGCC	1 cut(s)	21
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	119, 133
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	371
HphI	GGTGA	2 cut(s)	89, 173
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	3 cut(s)	86, 225, 262
HpyAV	CCTTC	3 cut(s)	22, 94, 117
HpyCH4III	ACNGT	2 cut(s)	167, 205
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	119, 145, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	119, 133
HspAI	GCGC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	8 cut(s)	10, 60, 105, 164, 191, 225, 238, 267
LweI	GCATC	2 cut(s)	228, 370
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	3 cut(s)	32, 161, 208
MboII	GAAGA	3 cut(s)	56, 64, 352
MluCI	AATT	2 cut(s)	47, 309
MnlI	CCTC	6 cut(s)	11, 54, 258, 267, 330, 359
MspR9I	CCNGG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	119, 133
NmuCI	GTSAC	2 cut(s)	32, 161
NspI	RCATGY	1 cut(s)	119
PctI	GAATGC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	6 cut(s)	14, 65, 99, 111, 156, 375
SfaNI	GCATC	2 cut(s)	228, 370
SfcI	CTRYAG	2 cut(s)	143, 201
Sse9I	AATT	2 cut(s)	47, 309
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	167, 205
TaiI	ACGT	1 cut(s)	111
TasI	AATT	2 cut(s)	47, 309
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	2 cut(s)	32, 161
Tsp45I	GTSAC	2 cut(s)	32, 161
TspRI	CASTG	1 cut(s)	321
XbaI	TCTAGA	1 cut(s)	85
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.