Rorug05G0198900

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002206
Physical Location & Seq
Forward (+)
19672735 .. 19673115
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0198900.1

Sequence Viewer

Length: 381 bp
ATGTTCCAGTCGGCTTCAGGTTTATGCCTACCGAAGAAGAGCTACTTTGTTACTATCTTCGTCGCAAGATCAAAGAAGAAGGGTTGCCAGAAGGTGTTGTTCATAACTGCAATGAATATGGTGAGAAAGAACCACGGCATGGGGCATACAAAGATCCATCAGATCAAGAAACCAATGACCTCTATTTCTTTACTGATCAACCCAGGAAGAGTTCTCCAAAGGGATCGCTTACAGTCGGAAGAGTTGGCACCCGCACCTAGAGAGGCGAAAAGACTGGGAAGAAAGCGCATGCTTCTGGTTCTGGTAGTGTTATCGGGTCGAGAACAAGATTTGTATACACGAAGCATGGGTCGGTTCAAGATGGTCACTGCTGGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

126

Amino Acids

14.27

Weight (kDa)

11.25

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 335
AciI CCGC 1 cut(s) 252
AclWI GGATC 2 cut(s) 148, 231
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
AlwI GGATC 2 cut(s) 148, 231
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspLEI GCGC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 133
BanI GGYRCC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BccI CCATC 2 cut(s) 165, 355
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 195
BfaI CTAG 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 133, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 7, 279
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 133, 202
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 7, 279
BshNI GGYRCC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 139
Bsp143I GATC 5 cut(s) 68, 153, 162, 195, 223
BspACI CCGC 1 cut(s) 252
BspHI TCATGA 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 2 cut(s) 148, 231
BspQI GCTCTTC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 2 cut(s) 7, 279
BssECI CCNNGG 2 cut(s) 133, 202
BssMI GATC 5 cut(s) 68, 153, 162, 195, 223
BssNAI GTATAC 1 cut(s) 336
Bst1107I GTATAC 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 3 cut(s) 32, 202, 234
BstC8I GCNNGC 2 cut(s) 290, 373
BstDSI CCRYGG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 5 cut(s) 71, 156, 165, 198, 226
BstMBI GATC 5 cut(s) 68, 153, 162, 195, 223
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BstZ17I GTATAC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 290, 373
CciI TCATGA 1 cut(s) 377
CfoI GCGC 1 cut(s) 288
CviAII CATG 4 cut(s) 139, 289, 346, 378
CviJI RGCY 3 cut(s) 14, 42, 375
CviKI_1 RGCY 3 cut(s) 14, 42, 375
DpnI GATC 5 cut(s) 70, 155, 164, 197, 225
DpnII GATC 5 cut(s) 68, 153, 162, 195, 223
Eam1104I CTCTTC 3 cut(s) 32, 202, 234
EarI CTCTTC 3 cut(s) 32, 202, 234
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 4 cut(s) 142, 292, 349, 381
FaiI YATR 9 cut(s) 25, 104, 119, 140, 147, 290, 336, 347, 379
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 4 cut(s) 138, 288, 345, 377
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 195
FblI GTMKAC 1 cut(s) 335
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 288
Hin1II CATG 4 cut(s) 142, 292, 349, 381
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 162, 238
Hpy188III TCNNGA 4 cut(s) 166, 320, 358, 378
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 73, 85
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 110
Hsp92II CATG 4 cut(s) 142, 292, 349, 381
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 5 cut(s) 68, 153, 162, 195, 223
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 9 cut(s) 3, 20, 101, 189, 216, 260, 281, 287, 357
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 49, 364
MalI GATC 5 cut(s) 70, 155, 164, 197, 225
MboI GATC 5 cut(s) 68, 153, 162, 195, 223
MboII GAAGA 7 cut(s) 46, 49, 49, 88, 219, 251, 291
MflI RGATCY 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 2 cut(s) 190, 256
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NdeII GATC 5 cut(s) 68, 153, 162, 195, 223
NlaIII CATG 4 cut(s) 142, 292, 349, 381
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 364
NspI RCATGY 1 cut(s) 292
PaeI GCATGC 1 cut(s) 292
PagI TCATGA 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 32
Sau3AI GATC 5 cut(s) 68, 153, 162, 195, 223
ScrFI CCNGG 1 cut(s) 204
SetI ASST 5 cut(s) 22, 44, 96, 182, 259
SphI GCATGC 1 cut(s) 292
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 319
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 2 cut(s) 91, 128
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 139
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.