Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002206

Physical Location & Seq

Genomic Coordinates Reverse (-)

2278341 .. 2278908

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAATGCGAATTATGTGATGGTTCTTGTTATAGCCATGGCAGCAACAGGAGTACTAATGGTACACGGAGCAGAAGTGTTCAAGTTTGCAGCAGGAGAACAAGACTTGGCTTTTGTAAACAAGGAAGATTTTCTCACTTGCAACACGGCGAATCCCTTTCATGTTTTTGACAACCAAACTACATTCAAATTTCTTTCCAAAGACAGATTCTTTTGCACCAGCACCTTCGCCGGCAACTGCTCCAAGGGCCAAAAAGTAGTCGTTGTTATTGGTCTCCTGTGGATTCCACTGGTGATATTTCTCCTAGTCCAAGTCCAAGTTCTGCTGAAGCTTCCTGAAAAATTTGTGCCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

118

Amino Acids

13.12

Weight (kDa)

7.72

Isoelectric Point (pI)

18.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18090 AT3G18090 AT3G18090 AT3G23780 AT3G23780
fragaria_vesca	FvH4_1g06870 FvH4_1g06870
malus_domestica	MD08G1057300.v1.1 MD15G1040100.v1.1
prunus_persica	Prupe.1G393500_v2.0.a1
pyrus_communis	pycom08g04680 pycom15g03760
rosa_chinensis	RchiOBHm_Chr2g0092681 RchiOBHm_Chr5g0042241 RchiOBHm_Chr5g0042281
rosa_laevigata	RLG00000016333 RLG00000034111 RLG00000034115
rosa_multiflora	Rmu_sc0001132.1_g000021 Rmu_sc0001715.1_g000028 Rmu_sc0017518.1_g000004 Rmu_sc0039596.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038430 Rroxscaffold_2G00148910
rosa_rugosa	Rorug02G0028500 Rorug02G0028600 Rorug02G0028700 Rorug05G0198900
rosa_samantha	Rh2AG074500 Rh2BG075400 Rh2CG077200 Rh2DG073100 Rh5AG283600 Rh5AG284200 Rh5AG285200 Rh5BG289600 Rh5BG290100 Rh5CG320900 Rh5DG298900 Rh5DG299300
rosa_wichuraiana	Rw0G001490 Rw0G001760 Rw2G005860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	188, 341
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	54, 63
AgsI	TTSAA	2 cut(s)	82, 187
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 303, 335
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	41, 89
ApoI	RAATTY	2 cut(s)	188, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	53, 101
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	42, 90
BlsI	GCNGC	2 cut(s)	43, 91
BmcAI	AGTACT	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	36, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	36, 243
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	53, 101
BshFI	GGCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	278
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	36, 243
BssT1I	CCWWGG	2 cut(s)	36, 243
BstC8I	GCNNGC	1 cut(s)	232
BstDSI	CCRYGG	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 246
BstV1I	GCAGC	2 cut(s)	53, 101
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	53, 62
CviAII	CATG	2 cut(s)	37, 161
CviJI	RGCY	4 cut(s)	35, 110, 249, 331
CviKI_1	RGCY	4 cut(s)	35, 110, 249, 331
CviQI	GTAC	2 cut(s)	53, 62
Eco130I	CCWWGG	2 cut(s)	36, 243
Eco31I	GGTCTC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	36, 243
ErhI	CCWWGG	2 cut(s)	36, 243
FaeI	CATG	2 cut(s)	40, 164
FaiI	YATR	4 cut(s)	15, 32, 38, 162
FatI	CATG	2 cut(s)	36, 160
Fnu4HI	GCNGC	2 cut(s)	42, 90
Fsp4HI	GCNGC	2 cut(s)	42, 90
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	42, 90
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	40, 164
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	151, 207, 283
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	64, 118
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	64, 118
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	89, 141, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 246
Hsp92II	CATG	2 cut(s)	40, 164
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	68, 245
LpnPI	CCDG	7 cut(s)	33, 78, 232, 244, 275, 290, 348
Lsp1109I	GCAGC	2 cut(s)	53, 101
MaeI	CTAG	1 cut(s)	305
MboII	GAAGA	1 cut(s)	137
MluCI	AATT	3 cut(s)	10, 188, 341
MroNI	GCCGGC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	129
MspI	CCGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	41, 246
NaeI	GCCGGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	2 cut(s)	40, 164
PctI	GAATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	151, 207, 283
PkrI	GCNGC	2 cut(s)	43, 91
PspPI	GGNCC	1 cut(s)	247
RsaI	GTAC	2 cut(s)	54, 63
RsaNI	GTAC	2 cut(s)	53, 62
SatI	GCNGC	2 cut(s)	42, 90
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	54
SetI	ASST	2 cut(s)	227, 333
Sse9I	AATT	3 cut(s)	10, 188, 341
SspMI	CTAG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	36, 243
TasI	AATT	3 cut(s)	10, 188, 341
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	3 cut(s)	151, 207, 283
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	41, 89
TspDTI	ATGAA	2 cut(s)	17, 149
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	294
XapI	RAATTY	2 cut(s)	188, 341
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.