DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18090 AT3G18090 AT3G18090 AT3G23780 AT3G23780 |
| fragaria_vesca | FvH4_1g06870 FvH4_1g06870 |
| malus_domestica | MD08G1057300.v1.1 MD15G1040100.v1.1 |
| prunus_persica | Prupe.1G393500_v2.0.a1 |
| pyrus_communis | pycom08g04680 pycom15g03760 |
| rosa_chinensis | RchiOBHm_Chr2g0092681 RchiOBHm_Chr5g0042241 RchiOBHm_Chr5g0042281 |
| rosa_laevigata | RLG00000016333 RLG00000034111 RLG00000034115 |
| rosa_multiflora | Rmu_sc0001132.1_g000021 Rmu_sc0001715.1_g000028 Rmu_sc0017518.1_g000004 Rmu_sc0039596.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00038430 Rroxscaffold_2G00148910 |
| rosa_rugosa | Rorug02G0028500 Rorug02G0028600 Rorug02G0028700 Rorug05G0198900 |
| rosa_samantha | Rh2AG074500 Rh2BG075400 Rh2CG077200 Rh2DG073100 Rh5AG283600 Rh5AG284200 Rh5AG285200 Rh5BG289600 Rh5BG290100 Rh5CG320900 Rh5DG298900 Rh5DG299300 |
| rosa_wichuraiana | Rw0G001490 Rw0G001760 Rw2G005860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 584, 2696 |
| Acc36I | ACCTGC | 1 cut(s) | 1546 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2666, 2846 |
| AccI | GTMKAC | 3 cut(s) | 250, 878, 3135 |
| AccII | CGCG | 2 cut(s) | 1005, 3452 |
| AciI | CCGC | 9 cut(s) | 692, 1010, 1095, 1225, 1378, 1517, 1595, 2578, 3452 |
| AclWI | GGATC | 4 cut(s) | 1942, 1955, 3308, 3430 |
| AcoI | YGGCCR | 4 cut(s) | 1222, 1379, 2419, 3457 |
| AcsI | RAATTY | 8 cut(s) | 155, 555, 1666, 1975, 2621, 2674, 2803, 3355 |
| AcuI | CTGAAG | 4 cut(s) | 749, 2762, 3237, 3333 |
| AcyI | GRCGYC | 2 cut(s) | 8, 2380 |
| AdeI | CACNNNGTG | 2 cut(s) | 1775, 2150 |
| AfaI | GTAC | 7 cut(s) | 565, 1693, 1701, 1908, 1923, 2234, 3525 |
| AfeI | AGCGCT | 2 cut(s) | 3103, 3200 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 604, 1449, 1467, 1963, 2004, 2296, 2666, 2846, 3514 |
| AflIII | ACRYGT | 5 cut(s) | 444, 1730, 2160, 2629, 3210 |
| AgsI | TTSAA | 7 cut(s) | 190, 440, 842, 1465, 1562, 1981, 3039 |
| AhlI | ACTAGT | 1 cut(s) | 1684 |
| AjiI | CACGTC | 1 cut(s) | 2630 |
| AjnI | CCWGG | 7 cut(s) | 135, 292, 1105, 2374, 2886, 2986, 3549 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1250, 1282 |
| Alw21I | GWGCWC | 3 cut(s) | 1302, 1392, 2052 |
| Alw26I | GTCTC | 9 cut(s) | 570, 642, 727, 1206, 1347, 2313, 2568, 2844, 3581 |
| AlwI | GGATC | 4 cut(s) | 1942, 1955, 3308, 3430 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2723 |
| Aor51HI | AGCGCT | 2 cut(s) | 3103, 3200 |
| ApaI | GGGCCC | 1 cut(s) | 3185 |
| ApeKI | GCWGC | 5 cut(s) | 42, 173, 1519, 1552, 3005 |
| ApoI | RAATTY | 8 cut(s) | 155, 555, 1666, 1975, 2621, 2674, 2803, 3355 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 641, 673, 2974, 3006 |
| AseI | ATTAAT | 1 cut(s) | 2955 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 147, 635 |
| AspA2I | CCTAGG | 1 cut(s) | 422 |
| AspLEI | GCGC | 3 cut(s) | 1332, 3104, 3201 |
| AspS9I | GGNCC | 5 cut(s) | 2227, 3181, 3182, 3245, 3473 |
| AsuC2I | CCSGG | 3 cut(s) | 1637, 2489, 3592 |
| AvaII | GGWCC | 2 cut(s) | 2227, 3473 |
| AvrII | CCTAGG | 1 cut(s) | 422 |
| BaeGI | GKGCMC | 1 cut(s) | 3185 |
| BalI | TGGCCA | 1 cut(s) | 2421 |
| BamHI | GGATCC | 1 cut(s) | 1947 |
| BanII | GRGCYC | 3 cut(s) | 1302, 2052, 3185 |
| BbsI | GAAGAC | 3 cut(s) | 704, 1550, 2121 |
| Bbv12I | GWGCWC | 3 cut(s) | 1302, 1392, 2052 |
| BbvCI | CCTCAGC | 1 cut(s) | 2544 |
| BbvI | GCAGC | 5 cut(s) | 54, 160, 1506, 1564, 2992 |
| BceAI | ACGGC | 1 cut(s) | 3444 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1157, 1191 |
| BciT130I | CCWGG | 7 cut(s) | 137, 294, 1107, 2376, 2888, 2988, 3551 |
| BciVI | GTATCC | 1 cut(s) | 2293 |
| BclI | TGATCA | 1 cut(s) | 2725 |
| BcnI | CCSGG | 3 cut(s) | 1637, 2489, 3592 |
| BcoDI | GTCTC | 9 cut(s) | 570, 642, 727, 1206, 1347, 2313, 2568, 2844, 3581 |
| BcuI | ACTAGT | 1 cut(s) | 1684 |
| BfaI | CTAG | 7 cut(s) | 123, 423, 812, 1289, 1397, 1685, 2999 |
| BfmI | CTRYAG | 2 cut(s) | 1407, 1520 |
| BfoI | RGCGCY | 2 cut(s) | 3105, 3202 |
| BfuAI | ACCTGC | 1 cut(s) | 1546 |
| BfuI | GTATCC | 1 cut(s) | 2293 |
| BisI | GCNGC | 7 cut(s) | 43, 174, 1225, 1379, 1520, 1553, 3006 |
| BlnI | CCTAGG | 1 cut(s) | 422 |
| BlsI | GCNGC | 7 cut(s) | 44, 175, 1226, 1380, 1521, 1554, 3007 |
| Bme18I | GGWCC | 2 cut(s) | 2227, 3473 |
| BmgBI | CACGTC | 1 cut(s) | 2630 |
| BmgT120I | GGNCC | 5 cut(s) | 2227, 3181, 3182, 3245, 3473 |
| BmiI | GGNNCC | 6 cut(s) | 1043, 1949, 2228, 2940, 3183, 3474 |
| BmrI | ACTGGG | 3 cut(s) | 1618, 1816, 3252 |
| BmuI | ACTGGG | 3 cut(s) | 1618, 1816, 3252 |
| BpiI | GAAGAC | 3 cut(s) | 704, 1550, 2121 |
| BpmI | CTGGAG | 1 cut(s) | 2918 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2544 |
| BpuEI | CTTGAG | 2 cut(s) | 1286, 2845 |
| BpuMI | CCSGG | 3 cut(s) | 1637, 2489, 3592 |
| BsaHI | GRCGYC | 2 cut(s) | 8, 2380 |
| BsaI | GGTCTC | 2 cut(s) | 1347, 3581 |
| BsaWI | WCCGGW | 1 cut(s) | 1442 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1466, 1496, 1846, 1876, 2695, 2725 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 604, 1449, 1467, 1963, 2004, 2296, 2666, 2846, 3514 |
| Bse1I | ACTGG | 9 cut(s) | 532, 1613, 1684, 1707, 1811, 3154, 3247, 3248, 3272 |
| Bse3DI | GCAATG | 2 cut(s) | 3162, 3478 |
| BseBI | CCWGG | 7 cut(s) | 137, 294, 1107, 2376, 2888, 2988, 3551 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 604, 1449, 1467, 1963, 2004, 2296, 2666, 2846, 3514 |
| BseMI | GCAATG | 2 cut(s) | 3162, 3478 |
| BseMII | CTCAG | 4 cut(s) | 551, 2305, 2535, 3394 |
| BseNI | ACTGG | 9 cut(s) | 532, 1613, 1684, 1707, 1811, 3154, 3247, 3248, 3272 |
| BseRI | GAGGAG | 1 cut(s) | 3379 |
| BseSI | GKGCMC | 1 cut(s) | 3185 |
| BseX3I | CGGCCG | 1 cut(s) | 1379 |
| BseXI | GCAGC | 5 cut(s) | 54, 160, 1506, 1564, 2992 |
| BsgI | GTGCAG | 2 cut(s) | 2303, 2728 |
| Bsh1236I | CGCG | 2 cut(s) | 1005, 3452 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1382 |
| BsiEI | CGRYCG | 1 cut(s) | 1382 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1302, 1392, 2052 |
| BsiSI | CCGG | 5 cut(s) | 1443, 1637, 2488, 3484, 3592 |
| BslFI | GGGAC | 3 cut(s) | 581, 1817, 2887 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 604, 1449, 1467, 1963, 2004, 2296, 2666, 2846, 3514 |
| BsmAI | GTCTC | 9 cut(s) | 570, 642, 727, 1206, 1347, 2313, 2568, 2844, 3581 |
| BsmFI | GGGAC | 3 cut(s) | 581, 1817, 2887 |
| BsmI | GAATGC | 3 cut(s) | 1063, 1130, 1433 |
| Bso31I | GGTCTC | 2 cut(s) | 1347, 3581 |
| Bsp120I | GGGCCC | 1 cut(s) | 3181 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1302, 1392, 2052, 3185 |
| Bsp1407I | TGTACA | 1 cut(s) | 1906 |
| Bsp143I | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| Bsp19I | CCATGG | 2 cut(s) | 664, 3340 |
| Bsp68I | TCGCGA | 1 cut(s) | 1005 |
| BspACI | CCGC | 9 cut(s) | 692, 1010, 1095, 1225, 1378, 1517, 1595, 2578, 3452 |
| BspCNI | CTCAG | 4 cut(s) | 552, 2304, 2536, 3393 |
| BspFNI | CGCG | 2 cut(s) | 1005, 3452 |
| BspLI | GGNNCC | 6 cut(s) | 1043, 1949, 2228, 2940, 3183, 3474 |
| BspMAI | CTGCAG | 1 cut(s) | 1524 |
| BspMI | ACCTGC | 1 cut(s) | 1546 |
| BspPI | GGATC | 4 cut(s) | 1942, 1955, 3308, 3430 |
| BspTNI | GGTCTC | 2 cut(s) | 1347, 3581 |
| BsrDI | GCAATG | 2 cut(s) | 3162, 3478 |
| BsrGI | TGTACA | 1 cut(s) | 1906 |
| BsrI | ACTGG | 9 cut(s) | 532, 1613, 1684, 1707, 1811, 3154, 3247, 3248, 3272 |
| BssMI | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| BssNAI | GTATAC | 2 cut(s) | 251, 3136 |
| BssNI | GRCGYC | 2 cut(s) | 8, 2380 |
| BssT1I | CCWWGG | 8 cut(s) | 21, 364, 422, 664, 913, 1912, 2845, 3340 |
| Bst1107I | GTATAC | 2 cut(s) | 251, 3136 |
| Bst2UI | CCWGG | 7 cut(s) | 137, 294, 1107, 2376, 2888, 2988, 3551 |
| Bst4CI | ACNGT | 8 cut(s) | 481, 540, 653, 766, 865, 1501, 2150, 3448 |
| Bst6I | CTCTTC | 3 cut(s) | 725, 2345, 3377 |
| BstACI | GRCGYC | 2 cut(s) | 8, 2380 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3152 |
| BstAUI | TGTACA | 1 cut(s) | 1906 |
| BstC8I | GCNNGC | 6 cut(s) | 429, 973, 1222, 1320, 1509, 2867 |
| BstDEI | CTNAG | 7 cut(s) | 560, 1850, 2291, 2452, 2544, 2822, 3380 |
| BstDSI | CCRYGG | 2 cut(s) | 664, 3340 |
| BstEII | GGTNACC | 1 cut(s) | 358 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1465 |
| BstFNI | CGCG | 2 cut(s) | 1005, 3452 |
| BstH2I | RGCGCY | 2 cut(s) | 3105, 3202 |
| BstHHI | GCGC | 3 cut(s) | 1332, 3104, 3201 |
| BstKTI | GATC | 8 cut(s) | 1369, 1950, 2519, 2728, 3283, 3303, 3438, 3468 |
| BstMAI | GTCTC | 9 cut(s) | 570, 642, 727, 1206, 1347, 2313, 2568, 2844, 3581 |
| BstMBI | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| BstMCI | CGRYCG | 1 cut(s) | 1382 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 179, 433, 1291, 1387, 2435, 3152, 3344, 3414, 3489 |
| BstNI | CCWGG | 7 cut(s) | 137, 294, 1107, 2376, 2888, 2988, 3551 |
| BstNSI | RCATGY | 9 cut(s) | 431, 448, 1322, 1734, 2164, 2869, 2966, 3214, 3404 |
| BstPI | GGTNACC | 1 cut(s) | 358 |
| BstSFI | CTRYAG | 2 cut(s) | 1407, 1520 |
| BstSLI | GKGCMC | 1 cut(s) | 3185 |
| BstUI | CGCG | 2 cut(s) | 1005, 3452 |
| BstV1I | GCAGC | 5 cut(s) | 54, 160, 1506, 1564, 2992 |
| BstV2I | GAAGAC | 3 cut(s) | 704, 1550, 2121 |
| BstX2I | RGATCY | 1 cut(s) | 1947 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 381 |
| BstYI | RGATCY | 1 cut(s) | 1947 |
| BstZ17I | GTATAC | 2 cut(s) | 251, 3136 |
| BstZI | CGGCCG | 1 cut(s) | 1379 |
| BsuI | GTATCC | 1 cut(s) | 2293 |
| BtgI | CCRYGG | 2 cut(s) | 664, 3340 |
| BtgZI | GCGATG | 1 cut(s) | 1020 |
| BtrI | CACGTC | 1 cut(s) | 2630 |
| BtsI | GCAGTG | 2 cut(s) | 1769, 2716 |
| BtsIMutI | CAGTG | 9 cut(s) | 1606, 1677, 1769, 2146, 2716, 2748, 3240, 3279, 3388 |
| BtuMI | TCGCGA | 1 cut(s) | 1005 |
| BveI | ACCTGC | 1 cut(s) | 1546 |
| Cac8I | GCNNGC | 6 cut(s) | 429, 973, 1222, 1320, 1509, 2867 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2723 |
| CfoI | GCGC | 3 cut(s) | 1332, 3104, 3201 |
| Cfr13I | GGNCC | 5 cut(s) | 2227, 3181, 3182, 3245, 3473 |
| CseI | GACGC | 2 cut(s) | 1850, 2388 |
| Csp6I | GTAC | 7 cut(s) | 564, 1692, 1700, 1907, 1922, 2233, 3524 |
| CviQI | GTAC | 7 cut(s) | 564, 1692, 1700, 1907, 1922, 2233, 3524 |
| DdeI | CTNAG | 7 cut(s) | 560, 1850, 2291, 2452, 2544, 2822, 3380 |
| DpnI | GATC | 8 cut(s) | 1368, 1949, 2518, 2727, 3282, 3302, 3437, 3467 |
| DpnII | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| DraIII | CACNNNGTG | 2 cut(s) | 1775, 2150 |
| EaeI | YGGCCR | 4 cut(s) | 1222, 1379, 2419, 3457 |
| EagI | CGGCCG | 1 cut(s) | 1379 |
| Eam1104I | CTCTTC | 3 cut(s) | 725, 2345, 3377 |
| EarI | CTCTTC | 3 cut(s) | 725, 2345, 3377 |
| EciI | GGCGGA | 1 cut(s) | 2593 |
| Ecl136II | GAGCTC | 2 cut(s) | 1300, 2050 |
| EclXI | CGGCCG | 1 cut(s) | 1379 |
| Eco130I | CCWWGG | 8 cut(s) | 21, 364, 422, 664, 913, 1912, 2845, 3340 |
| Eco147I | AGGCCT | 3 cut(s) | 1161, 1214, 1343 |
| Eco24I | GRGCYC | 3 cut(s) | 1302, 2052, 3185 |
| Eco31I | GGTCTC | 2 cut(s) | 1347, 3581 |
| Eco47I | GGWCC | 2 cut(s) | 2227, 3473 |
| Eco47III | AGCGCT | 2 cut(s) | 3103, 3200 |
| Eco52I | CGGCCG | 1 cut(s) | 1379 |
| Eco53kI | GAGCTC | 2 cut(s) | 1300, 2050 |
| Eco57I | CTGAAG | 4 cut(s) | 749, 2762, 3237, 3333 |
| Eco91I | GGTNACC | 1 cut(s) | 358 |
| EcoICRI | GAGCTC | 2 cut(s) | 1300, 2050 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1465 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2227, 3473 |
| EcoO65I | GGTNACC | 1 cut(s) | 358 |
| EcoRII | CCWGG | 7 cut(s) | 135, 292, 1105, 2374, 2886, 2986, 3549 |
| EcoT14I | CCWWGG | 8 cut(s) | 21, 364, 422, 664, 913, 1912, 2845, 3340 |
| EcoT22I | ATGCAT | 5 cut(s) | 457, 1130, 2871, 2968, 3402 |
| EcoT38I | GRGCYC | 3 cut(s) | 1302, 2052, 3185 |
| ErhI | CCWWGG | 8 cut(s) | 21, 364, 422, 664, 913, 1912, 2845, 3340 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 602, 634, 1607, 1639, 2763, 2795 |
| FaqI | GGGAC | 3 cut(s) | 581, 1817, 2887 |
| FauI | CCCGC | 2 cut(s) | 1602, 3445 |
| FauNDI | CATATG | 4 cut(s) | 451, 2200, 2662, 3529 |
| FbaI | TGATCA | 1 cut(s) | 2725 |
| FblI | GTMKAC | 3 cut(s) | 250, 878, 3135 |
| Fnu4HI | GCNGC | 7 cut(s) | 43, 174, 1225, 1379, 1520, 1553, 3006 |
| FriOI | GRGCYC | 3 cut(s) | 1302, 2052, 3185 |
| Fsp4HI | GCNGC | 7 cut(s) | 43, 174, 1225, 1379, 1520, 1553, 3006 |
| FspBI | CTAG | 7 cut(s) | 123, 423, 812, 1289, 1397, 1685, 2999 |
| GlaI | GCGC | 3 cut(s) | 1331, 3103, 3200 |
| GluI | GCNGC | 7 cut(s) | 43, 174, 1225, 1379, 1520, 1553, 3006 |
| GsuI | CTGGAG | 1 cut(s) | 2918 |
| HaeII | RGCGCY | 2 cut(s) | 3105, 3202 |
| HapII | CCGG | 5 cut(s) | 1443, 1637, 2488, 3484, 3592 |
| HgaI | GACGC | 2 cut(s) | 1850, 2388 |
| HhaI | GCGC | 3 cut(s) | 1332, 3104, 3201 |
| Hin1I | GRCGYC | 2 cut(s) | 8, 2380 |
| Hin6I | GCGC | 3 cut(s) | 1330, 3102, 3199 |
| HinP1I | GCGC | 3 cut(s) | 1330, 3102, 3199 |
| HincII | GTYRAC | 4 cut(s) | 879, 2551, 2635, 2993 |
| HindII | GTYRAC | 4 cut(s) | 879, 2551, 2635, 2993 |
| HindIII | AAGCTT | 4 cut(s) | 55, 376, 500, 3574 |
| HpaII | CCGG | 5 cut(s) | 1443, 1637, 2488, 3484, 3592 |
| Hpy99I | CGWCG | 2 cut(s) | 883, 1866 |
| HpyCH4III | ACNGT | 8 cut(s) | 481, 540, 653, 766, 865, 1501, 2150, 3448 |
| HpyCH4IV | ACGT | 3 cut(s) | 2503, 2629, 3322 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 179, 433, 1291, 1387, 2435, 3152, 3344, 3414, 3489 |
| HpyF3I | CTNAG | 7 cut(s) | 560, 1850, 2291, 2452, 2544, 2822, 3380 |
| HpySE526I | ACGT | 3 cut(s) | 2503, 2629, 3322 |
| Hsp92I | GRCGYC | 2 cut(s) | 8, 2380 |
| HspAI | GCGC | 3 cut(s) | 1330, 3102, 3199 |
| Ksp22I | TGATCA | 1 cut(s) | 2725 |
| Kzo9I | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| LmnI | GCTCC | 6 cut(s) | 1445, 2057, 2720, 3344, 3533, 3553 |
| Lsp1109I | GCAGC | 5 cut(s) | 54, 160, 1506, 1564, 2992 |
| MaeI | CTAG | 7 cut(s) | 123, 423, 812, 1289, 1397, 1685, 2999 |
| MaeII | ACGT | 3 cut(s) | 2503, 2629, 3322 |
| MaeIII | GTNAC | 7 cut(s) | 358, 417, 1235, 1411, 2534, 3323, 3383 |
| MalI | GATC | 8 cut(s) | 1368, 1949, 2518, 2727, 3282, 3302, 3437, 3467 |
| MboI | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| MflI | RGATCY | 1 cut(s) | 1947 |
| MhlI | GDGCHC | 4 cut(s) | 1302, 1392, 2052, 3185 |
| MlsI | TGGCCA | 1 cut(s) | 2421 |
| MluNI | TGGCCA | 1 cut(s) | 2421 |
| MlyI | GAGTC | 4 cut(s) | 2570, 2909, 3380, 3488 |
| MmeI | TCCRAC | 4 cut(s) | 605, 1248, 1558, 1792 |
| Mox20I | TGGCCA | 1 cut(s) | 2421 |
| Mph1103I | ATGCAT | 5 cut(s) | 457, 1130, 2871, 2968, 3402 |
| MroXI | GAANNNNTTC | 2 cut(s) | 147, 635 |
| MscI | TGGCCA | 1 cut(s) | 2421 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2480 |
| Msp20I | TGGCCA | 1 cut(s) | 2421 |
| MspA1I | CMGCKG | 1 cut(s) | 1519 |
| MspI | CCGG | 5 cut(s) | 1443, 1637, 2488, 3484, 3592 |
| Mva1269I | GAATGC | 3 cut(s) | 1063, 1130, 1433 |
| MvaI | CCWGG | 7 cut(s) | 137, 294, 1107, 2376, 2888, 2988, 3551 |
| MvnI | CGCG | 2 cut(s) | 1005, 3452 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 179, 433, 1291, 1387, 2435, 3152, 3344, 3414, 3489 |
| NciI | CCSGG | 3 cut(s) | 1637, 2489, 3592 |
| NcoI | CCATGG | 2 cut(s) | 664, 3340 |
| NdeI | CATATG | 4 cut(s) | 451, 2200, 2662, 3529 |
| NdeII | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| NlaIV | GGNNCC | 6 cut(s) | 1043, 1949, 2228, 2940, 3183, 3474 |
| NmeAIII | GCCGAG | 1 cut(s) | 412 |
| NmuCI | GTSAC | 4 cut(s) | 1235, 1411, 3323, 3383 |
| NruI | TCGCGA | 1 cut(s) | 1005 |
| NsiI | ATGCAT | 5 cut(s) | 457, 1130, 2871, 2968, 3402 |
| NspI | RCATGY | 9 cut(s) | 431, 448, 1322, 1734, 2164, 2869, 2966, 3214, 3404 |
| PaeI | GCATGC | 3 cut(s) | 431, 1322, 2869 |
| PceI | AGGCCT | 3 cut(s) | 1161, 1214, 1343 |
| PciI | ACATGT | 4 cut(s) | 444, 1730, 2160, 3210 |
| PctI | GAATGC | 3 cut(s) | 1063, 1130, 1433 |
| PdmI | GAANNNNTTC | 2 cut(s) | 147, 635 |
| PfeI | GAWTC | 6 cut(s) | 266, 943, 1706, 1826, 2714, 3205 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2666, 2846 |
| PkrI | GCNGC | 7 cut(s) | 44, 175, 1226, 1380, 1521, 1554, 3007 |
| PleI | GAGTC | 4 cut(s) | 2569, 2908, 3380, 3488 |
| PpsI | GAGTC | 4 cut(s) | 2569, 2908, 3380, 3488 |
| PpuMI | RGGWCCY | 2 cut(s) | 2227, 3473 |
| PscI | ACATGT | 4 cut(s) | 444, 1730, 2160, 3210 |
| PshBI | ATTAAT | 1 cut(s) | 2955 |
| PsiI | TTATAA | 2 cut(s) | 584, 2696 |
| Psp124BI | GAGCTC | 2 cut(s) | 1302, 2052 |
| Psp5II | RGGWCCY | 2 cut(s) | 2227, 3473 |
| Psp6I | CCWGG | 7 cut(s) | 135, 292, 1105, 2374, 2886, 2986, 3549 |
| PspEI | GGTNACC | 1 cut(s) | 358 |
| PspGI | CCWGG | 7 cut(s) | 135, 292, 1105, 2374, 2886, 2986, 3549 |
| PspN4I | GGNNCC | 6 cut(s) | 1043, 1949, 2228, 2940, 3183, 3474 |
| PspOMI | GGGCCC | 1 cut(s) | 3181 |
| PspPI | GGNCC | 5 cut(s) | 2227, 3181, 3182, 3245, 3473 |
| PspPPI | RGGWCCY | 2 cut(s) | 2227, 3473 |
| PstI | CTGCAG | 1 cut(s) | 1524 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2723 |
| PsuI | RGATCY | 1 cut(s) | 1947 |
| RruI | TCGCGA | 1 cut(s) | 1005 |
| RsaI | GTAC | 7 cut(s) | 565, 1693, 1701, 1908, 1923, 2234, 3525 |
| RsaNI | GTAC | 7 cut(s) | 564, 1692, 1700, 1907, 1922, 2233, 3524 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2480 |
| SacI | GAGCTC | 2 cut(s) | 1302, 2052 |
| SalI | GTCGAC | 1 cut(s) | 877 |
| SatI | GCNGC | 7 cut(s) | 43, 174, 1225, 1379, 1520, 1553, 3006 |
| Sau3AI | GATC | 8 cut(s) | 1366, 1947, 2516, 2725, 3280, 3300, 3435, 3465 |
| Sau96I | GGNCC | 5 cut(s) | 2227, 3181, 3182, 3245, 3473 |
| SchI | GAGTC | 4 cut(s) | 2570, 2909, 3380, 3488 |
| SduI | GDGCHC | 4 cut(s) | 1302, 1392, 2052, 3185 |
| SfcI | CTRYAG | 2 cut(s) | 1407, 1520 |
| SinI | GGWCC | 2 cut(s) | 2227, 3473 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2480 |
| SmlI | CTYRAG | 2 cut(s) | 1301, 2860 |
| SmoI | CTYRAG | 2 cut(s) | 1301, 2860 |
| SpeI | ACTAGT | 1 cut(s) | 1684 |
| SphI | GCATGC | 3 cut(s) | 431, 1322, 2869 |
| SseBI | AGGCCT | 3 cut(s) | 1161, 1214, 1343 |
| SsiI | CCGC | 9 cut(s) | 692, 1010, 1095, 1225, 1378, 1517, 1595, 2578, 3452 |
| SspI | AATATT | 1 cut(s) | 2024 |
| SspMI | CTAG | 7 cut(s) | 123, 423, 812, 1289, 1397, 1685, 2999 |
| SstI | GAGCTC | 2 cut(s) | 1302, 2052 |
| StuI | AGGCCT | 3 cut(s) | 1161, 1214, 1343 |
| StyI | CCWWGG | 8 cut(s) | 21, 364, 422, 664, 913, 1912, 2845, 3340 |
| TaaI | ACNGT | 8 cut(s) | 481, 540, 653, 766, 865, 1501, 2150, 3448 |
| TaiI | ACGT | 3 cut(s) | 2506, 2632, 3325 |
| TaqI | TCGA | 8 cut(s) | 119, 639, 878, 980, 2046, 2643, 3113, 3585 |
| TatI | WGTACW | 4 cut(s) | 563, 1691, 1699, 1906 |
| TauI | GCSGC | 2 cut(s) | 1227, 1381 |
| TfiI | GAWTC | 6 cut(s) | 266, 943, 1706, 1826, 2714, 3205 |
| TscAI | CASTG | 9 cut(s) | 1613, 1684, 1776, 2153, 2716, 2755, 3247, 3279, 3388 |
| TseFI | GTSAC | 4 cut(s) | 1235, 1411, 3323, 3383 |
| TseI | GCWGC | 5 cut(s) | 42, 173, 1519, 1552, 3005 |
| Tsp45I | GTSAC | 4 cut(s) | 1235, 1411, 3323, 3383 |
| TspGWI | ACGGA | 4 cut(s) | 896, 1034, 1339, 2236 |
| TspRI | CASTG | 9 cut(s) | 1613, 1684, 1776, 2153, 2716, 2755, 3247, 3279, 3388 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2666, 2846 |
| VpaK11BI | GGWCC | 2 cut(s) | 2227, 3473 |
| VspI | ATTAAT | 1 cut(s) | 2955 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1465 |
| XapI | RAATTY | 8 cut(s) | 155, 555, 1666, 1975, 2621, 2674, 2803, 3355 |
| XbaI | TCTAGA | 2 cut(s) | 1288, 1396 |
| XceI | RCATGY | 9 cut(s) | 431, 448, 1322, 1734, 2164, 2869, 2966, 3214, 3404 |
| XmaJI | CCTAGG | 1 cut(s) | 422 |
| XmiI | GTMKAC | 3 cut(s) | 250, 878, 3135 |
| XmnI | GAANNNNTTC | 2 cut(s) | 147, 635 |
| XspI | CTAG | 7 cut(s) | 123, 423, 812, 1289, 1397, 1685, 2999 |
| Zsp2I | ATGCAT | 5 cut(s) | 457, 1130, 2871, 2968, 3402 |