Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

16295853 .. 16297970

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44740.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTGGTTAATACTCTCGAGCGGCGTTTGTTCTATATCCCTTCTTTCAAAATCAACCGTGACGTCGCCGGACTATTTGATTAAGGATTGTGCTGTTAAATCCAATGTTCTTAGCTTCTGGCGTCAATGCGGACGGACCACTTGCTTAAGGATTATTGCTCCAGACACGAAGAACACTCTAACAAGGCATTTTTGTGAAGGACTTGTATTACTACAATGGGAGGAAATTTCCCTTTGCTGCTGCTCAAATTGGTCAACCTTTAGAAATGAGATATCTCATCGTCAAGGGCTTCTTAGAGTTTGTGAATTCACGCTGGCAGAAATTGAGCATTTTGTTGATCCTGGGAATAAGTCACATCCGAAATTCTCTGATGTAGCAAATTTTGAATTCCTTATGTTTCCAAGAGAGGAACAAATGTCTGGCCAATCTGCGAAAAAACTTTGCCTTGGCGAAGTTGTTGCCAAGGGAACTGTGAACAAAGAAACTGTAGGCTACTTCATTGCGAGAGTGTATCTTTTCCTTGTCCGTCTTGGCACAGACAAGGAACAGTTGCGTTTCCGCCAGCATTTTGCAAATGAAATGGCCCGCTATGCTGCAGATTGTTTGGATGCTGAATTTGAGAGTTCATATGGGTGGATTGAATGTGTTGGTATAGCAGATAGGTCTGCATTCGACTTACGTGCCCACTCGGTAGGAAAAGTTGCTCTGTGGCTGAGAGAAATTTCCAGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

244

Amino Acids

27.8

Weight (kDa)

7.51

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	21
AciI	CCGC	4 cut(s)	21, 129, 559, 586
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	7 cut(s)	225, 305, 362, 379, 386, 614, 720
AcyI	GRCGYC	2 cut(s)	62, 121
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	48, 386, 641
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	2 cut(s)	421, 582
ApeKI	GCWGC	3 cut(s)	237, 240, 593
ApoI	RAATTY	7 cut(s)	225, 305, 362, 379, 386, 614, 720
AspS9I	GGNCC	2 cut(s)	135, 583
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	685
BalI	TGGCCA	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	224, 227, 580
BcgI	CGANNNNNNTGC	4 cut(s)	440, 474, 662, 696
BciT130I	CCWGG	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	486, 594
BfrI	CTTAAG	1 cut(s)	145
BisI	GCNGC	4 cut(s)	22, 238, 241, 594
BlsI	GCNGC	4 cut(s)	23, 239, 242, 595
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	135, 583
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	680
BsaHI	GRCGYC	2 cut(s)	62, 121
BsaJI	CCNNGG	3 cut(s)	341, 445, 462
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	341, 445, 462
BseGI	GGATG	2 cut(s)	355, 613
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	3 cut(s)	224, 227, 580
BshFI	GGCC	2 cut(s)	423, 584
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	2 cut(s)	423, 584
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	4 cut(s)	21, 129, 559, 586
BspANI	GGCC	2 cut(s)	423, 584
BspCNI	CTCAG	1 cut(s)	705
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	498
BssECI	CCNNGG	3 cut(s)	341, 445, 462
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	2 cut(s)	62, 121
BssT1I	CCWWGG	2 cut(s)	445, 462
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	58, 472, 487, 549
BstACI	GRCGYC	2 cut(s)	62, 121
BstAFI	CTTAAG	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	680
BstC8I	GCNNGC	3 cut(s)	315, 563, 586
BstDEI	CTNAG	3 cut(s)	110, 293, 713
BstF5I	GGATG	2 cut(s)	355, 613
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	2 cut(s)	486, 594
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	3 cut(s)	224, 227, 580
BsuRI	GGCC	2 cut(s)	423, 584
BtsCI	GGATG	2 cut(s)	355, 613
Cac8I	GCNNGC	3 cut(s)	315, 563, 586
Cfr13I	GGNCC	2 cut(s)	135, 583
CseI	GACGC	1 cut(s)	110
CviJI	RGCY	6 cut(s)	114, 289, 423, 492, 584, 712
CviKI_1	RGCY	6 cut(s)	114, 289, 423, 492, 584, 712
DdeI	CTNAG	3 cut(s)	110, 293, 713
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	421
EciI	GGCGGA	1 cut(s)	548
Eco130I	CCWWGG	2 cut(s)	445, 462
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	16
EcoRI	GAATTC	2 cut(s)	305, 386
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	445, 462
ErhI	CCWWGG	2 cut(s)	445, 462
FaiI	YATR	6 cut(s)	35, 395, 591, 628, 630, 653
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FauI	CCCGC	1 cut(s)	593
FauNDI	CATATG	1 cut(s)	628
Fnu4HI	GCNGC	4 cut(s)	22, 238, 241, 594
FokI	GGATG	2 cut(s)	342, 620
Fsp4HI	GCNGC	4 cut(s)	22, 238, 241, 594
GluI	GCNGC	4 cut(s)	22, 238, 241, 594
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	423, 584
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	62, 121
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	255, 475
Hpy188I	TCNGA	2 cut(s)	360, 370
Hpy188III	TCNNGA	3 cut(s)	16, 161, 726
Hpy8I	GTNNAC	2 cut(s)	255, 475
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	50, 191
HpyCH4III	ACNGT	4 cut(s)	58, 472, 487, 549
HpyCH4IV	ACGT	2 cut(s)	62, 679
HpyCH4V	TGCA	3 cut(s)	572, 596, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	3 cut(s)	110, 293, 713
HpySE526I	ACGT	2 cut(s)	62, 679
Hsp92I	GRCGYC	2 cut(s)	62, 121
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	81, 103, 174, 299, 327, 354, 405, 575
Lsp1109I	GCAGC	3 cut(s)	224, 227, 580
LweI	GCATC	1 cut(s)	598
MaeII	ACGT	2 cut(s)	62, 679
MaeIII	GTNAC	2 cut(s)	58, 351
MalI	GATC	1 cut(s)	339
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	1 cut(s)	337
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	685
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	9 cut(s)	225, 247, 305, 321, 362, 379, 386, 614, 720
MluNI	TGGCCA	1 cut(s)	423
MnlI	CCTC	2 cut(s)	214, 400
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	4 cut(s)	8, 81, 96, 146
MslI	CAYNNNNRTG	2 cut(s)	192, 631
Msp20I	TGGCCA	1 cut(s)	423
MspCI	CTTAAG	1 cut(s)	145
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	1 cut(s)	337
NmuCI	GTSAC	2 cut(s)	58, 351
PaeR7I	CTCGAG	1 cut(s)	16
PctI	GAATGC	1 cut(s)	668
PkrI	GCNGC	4 cut(s)	23, 239, 242, 595
Ppu21I	YACGTR	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	135, 583
PstI	CTGCAG	1 cut(s)	598
RseI	CAYNNNNRTG	2 cut(s)	192, 631
SaqAI	TTAA	4 cut(s)	8, 81, 96, 146
SatI	GCNGC	4 cut(s)	22, 238, 241, 594
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	135, 583
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	685
SetI	ASST	6 cut(s)	65, 116, 260, 665, 682, 734
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	2 cut(s)	486, 594
Sfr274I	CTCGAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	2 cut(s)	192, 631
SmlI	CTYRAG	2 cut(s)	16, 145
SmoI	CTYRAG	2 cut(s)	16, 145
Sse9I	AATT	9 cut(s)	225, 247, 305, 321, 362, 379, 386, 614, 720
SsiI	CCGC	4 cut(s)	21, 129, 559, 586
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	445, 462
TaaI	ACNGT	4 cut(s)	58, 472, 487, 549
TaiI	ACGT	2 cut(s)	65, 682
TaqI	TCGA	2 cut(s)	17, 672
TasI	AATT	9 cut(s)	225, 247, 305, 321, 362, 379, 386, 614, 720
TauI	GCSGC	1 cut(s)	24
Tru1I	TTAA	4 cut(s)	8, 81, 96, 146
Tru9I	TTAA	4 cut(s)	8, 81, 96, 146
TseFI	GTSAC	2 cut(s)	58, 351
TseI	GCWGC	3 cut(s)	237, 240, 593
Tsp45I	GTSAC	2 cut(s)	58, 351
TspDTI	ATGAA	3 cut(s)	487, 591, 615
TspGWI	ACGGA	2 cut(s)	148, 515
Vha464I	CTTAAG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	7 cut(s)	225, 305, 362, 379, 386, 614, 720
XhoI	CTCGAG	1 cut(s)	16
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.