Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

68568816 .. 68569633

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTCCCAAGGGATGAACAAAAGCCCGTCCAATCTGCGAGATTAATCTCACTGGGTGAAGCAATGCAGTCTAAGATTATGGAGAATGAAACTCTTGGCTACTTCATTGGGAGAGTATATTTCTTCCTCACTTGTCTGGGTATAGACAAGAACTGTTTAAGGTTCAGGCAACACCTTGCTAAAGAAATGTCTCACTATGCTGCTAATTGCTGGGATGCTGAGATAGAGACTTCCTACGGCTGGATTGAGTGTGTCGGTATTGCAGATAGATATGCGTATGACTTGAAGGCTCATTCAGGGAAAAGTCGTCTTGAGGCACATGAACAACTTTTAGAACCAAGAGAAGTGGAGAAATTGGTTATATCTCCGGCAAAGAAAGAGATTGGTCCTGCTTTCGAGAAGAAGCAAAAGAATGTGTTTGCAGCTTTGGAGACTATGAATGAAGAAGAAATTTCAAAAATGAAGGCTGAGTTAGACTCGAGAGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGGAACATGTATCTATTAAGAGCAGTATGGTGACAATTTCAAAGAACCAACAGTTTGAGGATGTTGCTAAGGACATTTCCAAGTCATTGACTGCTGCTGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

207

Amino Acids

23.37

Weight (kDa)

5.64

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	286, 456, 555
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw26I	GTCTC	3 cut(s)	195, 221, 425
Ama87I	CYCGRG	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	200, 422, 608
ApoI	RAATTY	1 cut(s)	450
AseI	ATTAAT	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	68, 556
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	187, 434, 595
BceAI	ACGGC	1 cut(s)	253
BcoDI	GTCTC	3 cut(s)	195, 221, 425
BisI	GCNGC	3 cut(s)	201, 423, 609
BlsI	GCNGC	3 cut(s)	202, 424, 610
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	3 cut(s)	19, 220, 580
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	210, 459
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	187, 434, 595
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	490
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	3 cut(s)	195, 221, 425
BsoBI	CYCGRG	1 cut(s)	478
BspCNI	CTCAG	2 cut(s)	211, 460
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	155, 567
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	4 cut(s)	72, 219, 468, 582
BstF5I	GGATG	3 cut(s)	19, 220, 580
BstMAI	GTCTC	3 cut(s)	195, 221, 425
BstNSI	RCATGY	1 cut(s)	524
BstV1I	GCAGC	3 cut(s)	187, 434, 595
BtsCI	GGATG	3 cut(s)	19, 220, 580
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	386
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	2 cut(s)	320, 521
CviJI	RGCY	6 cut(s)	25, 99, 240, 290, 425, 467
CviKI_1	RGCY	6 cut(s)	25, 99, 240, 290, 425, 467
DdeI	CTNAG	4 cut(s)	72, 219, 468, 582
DraIII	CACNNNGTG	1 cut(s)	56
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	323, 524
FatI	CATG	2 cut(s)	319, 520
Fnu4HI	GCNGC	3 cut(s)	201, 423, 609
FokI	GGATG	3 cut(s)	26, 227, 587
Fsp4HI	GCNGC	3 cut(s)	201, 423, 609
GluI	GCNGC	3 cut(s)	201, 423, 609
GsaI	CCCAGC	1 cut(s)	214
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	2 cut(s)	323, 524
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	68, 556
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188III	TCNNGA	3 cut(s)	311, 397, 480
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	280, 457
HpyCH4III	ACNGT	2 cut(s)	155, 567
HpyCH4V	TGCA	4 cut(s)	67, 263, 422, 507
HpyF3I	CTNAG	4 cut(s)	72, 219, 468, 582
Hsp92II	CATG	2 cut(s)	323, 524
LpnPI	CCDG	9 cut(s)	38, 122, 151, 196, 226, 282, 381, 402, 597
Lsp1109I	GCAGC	3 cut(s)	187, 434, 595
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	544
MboII	GAAGA	4 cut(s)	115, 412, 455, 458
MluCI	AATT	4 cut(s)	205, 353, 450, 549
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	5 cut(s)	137, 307, 476, 481, 565
MseI	TTAA	3 cut(s)	44, 158, 531
MspI	CCGG	1 cut(s)	368
NlaIII	CATG	2 cut(s)	323, 524
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	1 cut(s)	524
PaeR7I	CTCGAG	1 cut(s)	478
PciI	ACATGT	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	202, 424, 610
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PscI	ACATGT	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	44, 158, 531
SatI	GCNGC	3 cut(s)	201, 423, 609
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	470
SetI	ASST	4 cut(s)	164, 177, 427, 492
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	478
SinI	GGWCC	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	478
SmlI	CTYRAG	2 cut(s)	311, 478
SmoI	CTYRAG	2 cut(s)	311, 478
Sse9I	AATT	4 cut(s)	205, 353, 450, 549
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	155, 567
TaqI	TCGA	2 cut(s)	396, 479
TasI	AATT	4 cut(s)	205, 353, 450, 549
Tru1I	TTAA	3 cut(s)	44, 158, 531
Tru9I	TTAA	3 cut(s)	44, 158, 531
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	3 cut(s)	200, 422, 608
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	7 cut(s)	30, 94, 102, 336, 452, 456, 476
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	386
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	1 cut(s)	450
XceI	RCATGY	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.