Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

23706327 .. 23708854

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCATCCTCACTTCAGATACCAACTGGTCACGGTTTGTTCAGCCGAGGACCCGTTCCGCAAAGCCCTCTCCGAGAAGATTTCGAAGGTCGAGAGACAGGGCAACCAGGTCCCCGCTGTGAAGAAAGCCGGGGCCGCCAAGACGAGCGGCGGTGCTGGCCTCTACGACTACGGCCCTCCTGGTTTCGCCGTCAAGTCCAATGTCCTAGGCTTTTGGCTTCAGAGAACATGTTCGAAGTTGACTGCCCTTGTGTCACGTACACCTGAGGTTGTTTTGAAAGCATCTGGTCATGTGGAGAAATTCAACGATCTTATGGTTAAGGATGAGGCATCTGGGACTTGCTACAGATCTGATCACTTGCTCAAGGATTACTGTAAAGATAAGCTTCAAAGGGACATCACAATTACTTCAGAGATGGCAGTGGAACTGAAAGAAATATCACCTCGCCAAGGTCATTTGAGGGTCCGTGAATTTACCCTTGCGGAGATTGAGCACTTTGTTGACCCTGAAGACAAATCTCACCCAAAATTCTCTGATGTTGCACATTTGGAGTTTCTTATGTTCCCAAGGGATGAACAGAAGCCTGGCCATTCTGCAAGGATAATCTCACTAGGTGAAGCCGTATCTTCTATGACAAGAACCATTTACGGTTCCGGCAGCACCTTGCCAATGAAATGGCTCAGGACTGTTGGGATGATGGTAGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

236

Amino Acids

26.37

Weight (kDa)

8.96

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	6 cut(s)	58, 114, 135, 147, 150, 482
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	3 cut(s)	299, 470, 527
AcuI	CTGAAG	3 cut(s)	203, 393, 528
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	277, 304, 389
AjnI	CCWGG	3 cut(s)	105, 178, 583
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	4 cut(s)	132, 157, 172, 586
ApeKI	GCWGC	1 cut(s)	657
ApoI	RAATTY	3 cut(s)	299, 470, 527
Asp700I	GAANNNNTTC	1 cut(s)	229
AspA2I	CCTAGG	1 cut(s)	205
AspS9I	GGNCC	5 cut(s)	49, 109, 132, 173, 463
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	3 cut(s)	432, 512, 626
AsuII	TTCGAA	2 cut(s)	83, 233
AvaII	GGWCC	3 cut(s)	49, 109, 463
AvrII	CCTAGG	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	669
BccI	CCATC	2 cut(s)	409, 691
BceAI	ACGGC	3 cut(s)	173, 187, 605
BciT130I	CCWGG	3 cut(s)	107, 180, 585
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	206, 611
BfmI	CTRYAG	1 cut(s)	343
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	3 cut(s)	135, 148, 658
BlnI	CCTAGG	1 cut(s)	205
BlsI	GCNGC	3 cut(s)	136, 149, 659
Bme1390I	CCNGG	4 cut(s)	107, 130, 180, 585
Bme18I	GGWCC	3 cut(s)	49, 109, 463
BmgT120I	GGNCC	5 cut(s)	49, 109, 132, 173, 463
BmiI	GGNNCC	5 cut(s)	51, 111, 133, 464, 652
BmrFI	CCNGG	4 cut(s)	107, 130, 180, 585
BmsI	GCATC	3 cut(s)	13, 290, 338
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	680
Bpu14I	TTCGAA	2 cut(s)	83, 233
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	45, 129, 205, 448, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	30
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	107, 180, 585
BseDI	CCNNGG	5 cut(s)	45, 129, 205, 448, 566
BseGI	GGATG	4 cut(s)	4, 328, 577, 699
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	2 cut(s)	255, 694
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	669
BshFI	GGCC	4 cut(s)	134, 159, 174, 588
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	129, 654
BslFI	GGGAC	3 cut(s)	95, 349, 407
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	3 cut(s)	95, 349, 407
BsnI	GGCC	4 cut(s)	134, 159, 174, 588
Bsp119I	TTCGAA	2 cut(s)	83, 233
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	307, 347, 352
BspACI	CCGC	6 cut(s)	58, 114, 135, 147, 150, 482
BspANI	GGCC	4 cut(s)	134, 159, 174, 588
BspCNI	CTCAG	2 cut(s)	256, 693
BspLI	GGNNCC	5 cut(s)	51, 111, 133, 464, 652
BspT104I	TTCGAA	2 cut(s)	83, 233
BsrBI	CCGCTC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	5 cut(s)	45, 129, 205, 448, 566
BssMI	GATC	3 cut(s)	307, 347, 352
BssT1I	CCWWGG	3 cut(s)	205, 448, 566
Bst2UI	CCWGG	3 cut(s)	107, 180, 585
Bst4CI	ACNGT	4 cut(s)	34, 374, 650, 688
BstBAI	YACGTR	1 cut(s)	257
BstBI	TTCGAA	2 cut(s)	83, 233
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	264, 680
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	4 cut(s)	4, 328, 577, 699
BstKTI	GATC	3 cut(s)	310, 350, 355
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	307, 347, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 156
BstNI	CCWGG	3 cut(s)	107, 180, 585
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	4 cut(s)	105, 128, 178, 583
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	669
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	347
BstXI	CCANNNNNNTGG	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	134, 159, 174, 588
BtsCI	GGATG	4 cut(s)	4, 328, 577, 699
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	5 cut(s)	49, 109, 132, 173, 463
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	228, 290
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	264, 680
DpnI	GATC	3 cut(s)	309, 349, 354
DpnII	GATC	3 cut(s)	307, 347, 352
DraIII	CACNNNGTG	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	586
Eco130I	CCWWGG	3 cut(s)	205, 448, 566
Eco47I	GGWCC	3 cut(s)	49, 109, 463
Eco57I	CTGAAG	3 cut(s)	203, 393, 528
Eco81I	CCTNAGG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoO109I	RGGNCCY	2 cut(s)	49, 109
EcoRII	CCWGG	3 cut(s)	105, 178, 583
EcoT14I	CCWWGG	3 cut(s)	205, 448, 566
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	205, 448, 566
FaeI	CATG	2 cut(s)	231, 293
FaiI	YATR	5 cut(s)	229, 291, 314, 560, 632
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	3 cut(s)	95, 349, 407
FatI	CATG	2 cut(s)	227, 289
FauI	CCCGC	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	3 cut(s)	135, 148, 658
FokI	GGATG	3 cut(s)	335, 584, 706
Fsp4HI	GCNGC	3 cut(s)	135, 148, 658
FspBI	CTAG	2 cut(s)	206, 611
GluI	GCNGC	3 cut(s)	135, 148, 658
HaeIII	GGCC	4 cut(s)	134, 159, 174, 588
HapII	CCGG	2 cut(s)	129, 654
Hin1II	CATG	2 cut(s)	231, 293
HincII	GTYRAC	2 cut(s)	240, 502
HindII	GTYRAC	2 cut(s)	240, 502
HindIII	AAGCTT	1 cut(s)	383
HpaII	CCGG	2 cut(s)	129, 654
HphI	GGTGA	3 cut(s)	432, 512, 626
Hpy166II	GTNNAC	3 cut(s)	240, 260, 502
Hpy188I	TCNGA	6 cut(s)	17, 73, 222, 352, 412, 535
Hpy188III	TCNNGA	2 cut(s)	91, 682
Hpy8I	GTNNAC	3 cut(s)	240, 260, 502
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	4 cut(s)	34, 374, 650, 688
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	4, 542, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 156
HpyF3I	CTNAG	2 cut(s)	264, 680
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	231, 293
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	307, 347, 352
Lsp1109I	GCAGC	1 cut(s)	669
LweI	GCATC	3 cut(s)	13, 290, 338
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	2 cut(s)	206, 611
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	28, 252
MalI	GATC	3 cut(s)	309, 349, 354
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	3 cut(s)	307, 347, 352
MboII	GAAGA	4 cut(s)	88, 133, 521, 618
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	4 cut(s)	299, 402, 470, 527
MluNI	TGGCCA	1 cut(s)	588
MnlI	CCTC	9 cut(s)	18, 40, 77, 170, 186, 259, 319, 453, 453
Mox20I	TGGCCA	1 cut(s)	588
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	2 cut(s)	318, 709
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	129, 654
MspR9I	CCNGG	4 cut(s)	107, 130, 180, 585
MvaI	CCWGG	3 cut(s)	107, 180, 585
MwoI	GCNNNNNNNGC	2 cut(s)	134, 156
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	3 cut(s)	307, 347, 352
NlaIII	CATG	2 cut(s)	231, 293
NlaIV	GGNNCC	5 cut(s)	51, 111, 133, 464, 652
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	28, 252
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	231
NspV	TTCGAA	2 cut(s)	83, 233
PciI	ACATGT	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	136, 149, 659
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	2 cut(s)	49, 109
PscI	ACATGT	1 cut(s)	227
Psp5II	RGGWCCY	2 cut(s)	49, 109
Psp6I	CCWGG	3 cut(s)	105, 178, 583
PspGI	CCWGG	3 cut(s)	105, 178, 583
PspN4I	GGNNCC	5 cut(s)	51, 111, 133, 464, 652
PspPI	GGNCC	5 cut(s)	49, 109, 132, 173, 463
PspPPI	RGGWCCY	2 cut(s)	49, 109
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	318, 709
SatI	GCNGC	3 cut(s)	135, 148, 658
Sau3AI	GATC	3 cut(s)	307, 347, 352
Sau96I	GGNCC	5 cut(s)	49, 109, 132, 173, 463
ScrFI	CCNGG	4 cut(s)	107, 130, 180, 585
SduI	GDGCHC	1 cut(s)	495
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	13, 290, 338
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	2 cut(s)	83, 233
SinI	GGWCC	3 cut(s)	49, 109, 463
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	299, 402, 470, 527
SsiI	CCGC	6 cut(s)	58, 114, 135, 147, 150, 482
SspMI	CTAG	2 cut(s)	206, 611
StyD4I	CCNGG	4 cut(s)	105, 128, 178, 583
StyI	CCWWGG	3 cut(s)	205, 448, 566
TaaI	ACNGT	4 cut(s)	34, 374, 650, 688
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	83, 90, 233
TasI	AATT	4 cut(s)	299, 402, 470, 527
TauI	GCSGC	2 cut(s)	137, 150
Tru1I	TTAA	2 cut(s)	318, 709
Tru9I	TTAA	2 cut(s)	318, 709
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	2 cut(s)	28, 252
TseI	GCWGC	1 cut(s)	657
Tsp45I	GTSAC	2 cut(s)	28, 252
TspDTI	ATGAA	2 cut(s)	588, 686
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	426
VpaK11BI	GGWCC	3 cut(s)	49, 109, 463
XagI	CCTNNNNNAGG	1 cut(s)	447
XapI	RAATTY	3 cut(s)	299, 470, 527
XceI	RCATGY	1 cut(s)	231
XmaJI	CCTAGG	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	2 cut(s)	206, 611
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.