Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

14060552 .. 14061364

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTATCCTACATAGTGCATTCTAAGATTGTGGAGAATGAAACTCTTGGCTACTTCATTGGGAGAGTATATCTCTTCCTCACTCGTCTAGGTATAGACAAGAACCGTATAAGGTTCAGGCAACACCTTGCTAAAGAGATGGCTCACTATGCTGCTGACTGCTGGGATGCTGAGATTGAGACTTCCTATGGCTGGATTGAGTGCGTCGGTATTGCAGATAGATCTGCATATGACTTGAAGGCTCATTCGGGGAAAAGTCGTCTTGAGGCACATGAACAACTTTCAGAACCAAGAGAAGTGGAGAAATTGGTTATATCTCCGGTAAAGAAAGAGATTGGCCCTGCTTTCGAGAAGAAGCAAAAGAATGTGCGTGAAGCTTTGGAGGCTATGAATGAAGAAGAAATTTCAAAAATGAAGGCCGAGTTAGACTCCAAGGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

158

Amino Acids

18.04

Weight (kDa)

5.79

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	238, 408
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	337, 417
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	89
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	338
BmsI	GCATC	1 cut(s)	157
BplI	GAGNNNNNCTC	4 cut(s)	57, 89, 413, 445
BpuEI	CTTGAG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	442
BshFI	GGCC	2 cut(s)	339, 419
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	339, 419
Bsp143I	GATC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	339, 419
BspCNI	CTCAG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	24, 171
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 383
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	339, 419
BtsCI	GGATG	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	193
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	8 cut(s)	51, 143, 192, 242, 339, 377, 386, 419
CviKI_1	RGCY	8 cut(s)	51, 143, 192, 242, 339, 377, 386, 419
DdeI	CTNAG	2 cut(s)	24, 171
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	275
FatI	CATG	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	339, 419
HapII	CCGG	1 cut(s)	320
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	263, 349
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	232, 409
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	19, 215, 227, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 383
HpyF3I	CTNAG	2 cut(s)	24, 171
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	221
LpnPI	CCDG	5 cut(s)	103, 148, 178, 333, 354
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	89
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	4 cut(s)	67, 364, 407, 410
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	2 cut(s)	305, 402
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	4 cut(s)	89, 259, 376, 433
MspI	CCGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	149, 383
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	445
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	221
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	422
SetI	ASST	5 cut(s)	94, 116, 129, 379, 444
SfaNI	GCATC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	305, 402
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	348
TasI	AATT	2 cut(s)	305, 402
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	6 cut(s)	46, 54, 288, 404, 408, 428
XapI	RAATTY	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.