Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

26590910 .. 26591725

Gene Structure 816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCGCATGCATCCTCACTTCAGATACCAACTGGTCACGGTTTGTTCAGCCGAGGACCCGTTCCGCAAAGCCCTCTCCGAGAAGGTTTCGAAGGTCGAGAGACAGGGCAACCAGGTCCCCGCTGTGAAGAAAGCCGGGGCCGCCAAGACGGTACTTGACGTCGCCATTGAGGCCATGAACGCGCTGAAGCTTGAGAAGGCTTCGATCGAGAAAGACCTTCAAGCAACGATCAGCGGCTCCGTTAACAAGGAGGCGTTACGTCAGGCTGTGATTTACAGTGGCGGTGCTGGCCTCTACGACTACGGCCCTCCTGGTTTCGCCGTCAAGTCCAATGTCCTAGGCTTTTGGCTTCAGCATTTTTTGCTTGAAGAGAACATGTTCGAAGTTGACTGCCCTTGTGTCACGTACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

137

Amino Acids

15.11

Weight (kDa)

7.71

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
Acc16I	TGCGCA	1 cut(s)	5
AccII	CGCG	1 cut(s)	182
AciI	CCGC	5 cut(s)	64, 120, 141, 234, 282
AcuI	CTGAAG	3 cut(s)	4, 206, 335
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	153, 407
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	221, 368
AjnI	CCWGG	2 cut(s)	111, 310
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	94
AoxI	GGCC	4 cut(s)	138, 171, 289, 304
Asp700I	GAANNNNTTC	1 cut(s)	377
AspA2I	CCTAGG	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	6, 184
AspS9I	GGNCC	4 cut(s)	55, 115, 138, 305
AsuC2I	CCSGG	1 cut(s)	136
AsuII	TTCGAA	2 cut(s)	89, 381
AvaII	GGWCC	2 cut(s)	55, 115
AvrII	CCTAGG	1 cut(s)	337
BceAI	ACGGC	2 cut(s)	305, 319
BciT130I	CCWGG	2 cut(s)	113, 312
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	141, 235
BlnI	CCTAGG	1 cut(s)	337
BlsI	GCNGC	2 cut(s)	142, 236
Bme1390I	CCNGG	3 cut(s)	113, 136, 312
Bme18I	GGWCC	2 cut(s)	55, 115
BmgT120I	GGNCC	4 cut(s)	55, 115, 138, 305
BmiI	GGNNCC	4 cut(s)	57, 117, 139, 238
BmrFI	CCNGG	3 cut(s)	113, 136, 312
BmsI	GCATC	1 cut(s)	19
Bpu14I	TTCGAA	2 cut(s)	89, 381
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	51, 135, 337
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	113, 312
BseDI	CCNNGG	3 cut(s)	51, 135, 337
BseGI	GGATG	1 cut(s)	10
BseNI	ACTGG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	140, 173, 291, 306
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	4 cut(s)	140, 173, 291, 306
Bsp119I	TTCGAA	2 cut(s)	89, 381
Bsp143I	GATC	2 cut(s)	204, 228
BspACI	CCGC	5 cut(s)	64, 120, 141, 234, 282
BspANI	GGCC	4 cut(s)	140, 173, 291, 306
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	4 cut(s)	57, 117, 139, 238
BspT104I	TTCGAA	2 cut(s)	89, 381
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	51, 135, 337
BssMI	GATC	2 cut(s)	204, 228
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	2 cut(s)	113, 312
Bst4CI	ACNGT	3 cut(s)	40, 151, 278
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	405
BstBI	TTCGAA	2 cut(s)	89, 381
BstC8I	GCNNGC	2 cut(s)	8, 289
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	2 cut(s)	6, 184
BstKTI	GATC	2 cut(s)	207, 231
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	204, 228
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 170, 179, 288, 361
BstNI	CCWGG	2 cut(s)	113, 312
BstNSI	RCATGY	2 cut(s)	10, 379
BstSCI	CCNGG	3 cut(s)	111, 134, 310
BstUI	CGCG	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	140, 173, 291, 306
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	2 cut(s)	8, 289
CfoI	GCGC	2 cut(s)	6, 184
Cfr13I	GGNCC	4 cut(s)	55, 115, 138, 305
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	152, 406
CviAII	CATG	3 cut(s)	7, 175, 376
CviQI	GTAC	2 cut(s)	152, 406
DpnI	GATC	2 cut(s)	206, 230
DpnII	GATC	2 cut(s)	204, 228
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	55, 115
Eco57I	CTGAAG	3 cut(s)	4, 206, 335
EcoO109I	RGGNCCY	2 cut(s)	55, 115
EcoRII	CCWGG	2 cut(s)	111, 310
EcoT14I	CCWWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	3 cut(s)	10, 178, 379
FaiI	YATR	3 cut(s)	8, 176, 377
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	3 cut(s)	6, 174, 375
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	141, 235
Fsp4HI	GCNGC	2 cut(s)	141, 235
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	1 cut(s)	338
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 183
GluI	GCNGC	2 cut(s)	141, 235
HaeIII	GGCC	4 cut(s)	140, 173, 291, 306
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	2 cut(s)	6, 184
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	10, 178, 379
Hin6I	GCGC	2 cut(s)	4, 182
HinP1I	GCGC	2 cut(s)	4, 182
HincII	GTYRAC	2 cut(s)	244, 388
HindII	GTYRAC	2 cut(s)	244, 388
HindIII	AAGCTT	1 cut(s)	188
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	135
Hpy166II	GTNNAC	3 cut(s)	244, 388, 408
Hpy188I	TCNGA	2 cut(s)	23, 79
Hpy188III	TCNNGA	2 cut(s)	97, 208
Hpy8I	GTNNAC	3 cut(s)	244, 388, 408
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	4 cut(s)	76, 85, 190, 227
HpyCH4III	ACNGT	3 cut(s)	40, 151, 278
HpyCH4IV	ACGT	3 cut(s)	159, 259, 404
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 170, 179, 288, 361
HpySE526I	ACGT	3 cut(s)	159, 259, 404
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	10, 178, 379
HspAI	GCGC	2 cut(s)	4, 182
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	204, 228
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	9 cut(s)	17, 89, 98, 125, 148, 248, 273, 297, 324
LweI	GCATC	1 cut(s)	19
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	3 cut(s)	159, 259, 404
MaeIII	GTNAC	3 cut(s)	34, 255, 400
MalI	GATC	2 cut(s)	206, 230
MboI	GATC	2 cut(s)	204, 228
MboII	GAAGA	2 cut(s)	139, 380
MnlI	CCTC	7 cut(s)	24, 46, 83, 163, 244, 302, 318
Mph1103I	ATGCAT	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	122, 234
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	3 cut(s)	113, 136, 312
MvaI	CCWGG	2 cut(s)	113, 312
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	140, 170, 179, 288, 361
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	204, 228
NlaIII	CATG	3 cut(s)	10, 178, 379
NlaIV	GGNNCC	4 cut(s)	57, 117, 139, 238
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	34, 400
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	10, 379
NspV	TTCGAA	2 cut(s)	89, 381
PaeI	GCATGC	1 cut(s)	10
PciI	ACATGT	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	142, 236
Ple19I	CGATCG	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	405
PpuMI	RGGWCCY	2 cut(s)	55, 115
PscI	ACATGT	1 cut(s)	375
Psp5II	RGGWCCY	2 cut(s)	55, 115
Psp6I	CCWGG	2 cut(s)	111, 310
PspGI	CCWGG	2 cut(s)	111, 310
PspN4I	GGNNCC	4 cut(s)	57, 117, 139, 238
PspPI	GGNCC	4 cut(s)	55, 115, 138, 305
PspPPI	RGGWCCY	2 cut(s)	55, 115
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	2 cut(s)	153, 407
RsaNI	GTAC	2 cut(s)	152, 406
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	141, 235
Sau3AI	GATC	2 cut(s)	204, 228
Sau96I	GGNCC	4 cut(s)	55, 115, 138, 305
ScrFI	CCNGG	3 cut(s)	113, 136, 312
SetI	ASST	9 cut(s)	87, 96, 117, 162, 192, 219, 262, 407, 413
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	19
SfuI	TTCGAA	2 cut(s)	89, 381
SinI	GGWCC	2 cut(s)	55, 115
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	10
SsiI	CCGC	5 cut(s)	64, 120, 141, 234, 282
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	111, 134, 310
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	3 cut(s)	40, 151, 278
TaiI	ACGT	3 cut(s)	162, 262, 407
TaqI	TCGA	5 cut(s)	89, 96, 203, 207, 381
TauI	GCSGC	2 cut(s)	143, 237
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	34, 400
Tsp45I	GTSAC	2 cut(s)	34, 400
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	55, 115
XceI	RCATGY	2 cut(s)	10, 379
XmaJI	CCTAGG	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.