Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

43064334 .. 43065251

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013857

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGTTTACCCTTGCGGAGATTTAGCACTTTGTTGACCCTGAAAAGTGAAGACAAGTCTCGCCCAAAATTCTCTGATAAGCCTGGCCCTTCTGCAAGGATAATCTCACTAGGTGAAGCCGGCCATAGATCTGCATATGACGTGAAGGCTCATTCGTATAGATTTGCAGTAAAAAAGTATAAATATGCAAAATTGGCTATATCTCCTATAAAGAAAGCAATCGGTCATGGTTTCAACAAGGACCAAAAGAAAGTAATTGAAGCTTTAGAGGCCATGAAAGAAGAAGAAGCTTTGAAAATGAAGACTGATTTAGAGTCAAAGGGGAGGTGGAGTTTTATGTATGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

117

Amino Acids

13.19

Weight (kDa)

9.96

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	235, 260, 295
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	263, 290
AluI	AGCT	2 cut(s)	263, 290
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	3 cut(s)	85, 121, 270
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	86, 241
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	57, 308
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	86, 241
BmrFI	CCNGG	1 cut(s)	84
BpiI	GAAGAC	2 cut(s)	57, 308
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bse118I	RCCGGY	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	87, 123, 272
BsiSI	CCGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	87, 123, 272
Bsp143I	GATC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	3 cut(s)	87, 123, 272
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 269
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	347
BstV2I	GAAGAC	2 cut(s)	57, 308
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	3 cut(s)	87, 123, 272
BtrI	CACGTC	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	86, 241
CviAII	CATG	2 cut(s)	227, 274
CviJI	RGCY	9 cut(s)	82, 87, 119, 123, 149, 197, 263, 272, 290
CviKI_1	RGCY	9 cut(s)	82, 87, 119, 123, 149, 197, 263, 272, 290
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	230, 277
FatI	CATG	2 cut(s)	226, 273
FauNDI	CATATG	1 cut(s)	136
FspBI	CTAG	1 cut(s)	110
HaeIII	GGCC	3 cut(s)	87, 123, 272
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	230, 277
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	2 cut(s)	261, 288
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	8, 36
Hpy188I	TCNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	8, 36
HpyAV	CCTTC	2 cut(s)	99, 139
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	95, 134, 167, 188, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 269
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	230, 277
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	128
LpnPI	CCDG	4 cut(s)	53, 69, 96, 133
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	141
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	4 cut(s)	62, 293, 296, 313
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	3 cut(s)	68, 191, 255
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	2 cut(s)	262, 318
MroNI	GCCGGC	1 cut(s)	119
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	194, 269
NaeI	GCCGGC	1 cut(s)	121
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	128
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	230, 277
PdiI	GCCGGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	86, 241
PsuI	RGATCY	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	2 cut(s)	86, 241
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	5 cut(s)	115, 144, 265, 292, 329
SfcI	CTRYAG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	3 cut(s)	68, 191, 255
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	68, 191, 255
TscAI	CASTG	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	290, 314
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	68
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.