Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

26591727 .. 26593346

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTTAAGGATGAGGCATCTGGGACTTGCTACAGATCTGATCACTTGCTCAAGGATTACTGTAAAGATAAGCTTCAAAGGGACATCACAATTACTTCAGAGATGGCAGTGGAACTGAAAGAAGTACTTTCAAAATTAGATGTCCTCTCTGCTGAAGAGTTGGGTGAATATATAACGAGATACGGTATTACAGCCCCAGACACACAAGGAATCCTCTCTCGCATCCTTATCCATTCAACCTCCTGTTTCAAACATCAGTTGGTCCTTCTGGTGAAGATATCACCTCGCCAAGGTCTTTTGAGGGTCCGTGAATTTACCCTTGCGGAGATTGAGCACTTTGTTGAGCCTGAAGACAAATCTCACCCAAAATTCTCTGATGTTGCACATTTGGAGTTTCTTATGTTCCCAAGGGAAGAACAGAAGCCTGGCCATTCTGCAAGGATAATCTCACTAGGTGAAGCCGTATCTTCTAAGGATTCTAAAATTGTAGACAACGAAACCCTTGGCTACTTTATTGGGATAGTATACCTCTTCCTCACTTGTCTGAGTATAGACAAGAACCATTTAAGGTTCCGGCAGCACATTGCCAATGAAATGGCTCACTATGCCCAGGACTGTTGGGATGCTGAGATTGAGACTTCCTACGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

216

Amino Acids

24.71

Weight (kDa)

5.57

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	489, 525
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	311, 368
AcuI	CTGAAG	3 cut(s)	81, 174, 369
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	77, 132, 237, 250
AjnI	CCWGG	2 cut(s)	424, 609
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	629
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	577
ApoI	RAATTY	2 cut(s)	311, 368
AspS9I	GGNCC	2 cut(s)	262, 304
AsuHPI	GGTGA	5 cut(s)	176, 273, 283, 353, 467
AvaII	GGWCC	2 cut(s)	262, 304
BalI	TGGCCA	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	426, 611
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	31
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	579
BmcAI	AGTACT	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	426, 611
Bme18I	GGWCC	2 cut(s)	262, 304
BmgT120I	GGNCC	2 cut(s)	262, 304
BmiI	GGNNCC	2 cut(s)	305, 572
BmrFI	CCNGG	2 cut(s)	426, 611
BmsI	GCATC	3 cut(s)	26, 231, 613
BpiI	GAAGAC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	35
BsaJI	CCNNGG	4 cut(s)	289, 407, 502, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	426, 611
BseDI	CCNNGG	4 cut(s)	289, 407, 502, 609
BseGI	GGATG	3 cut(s)	16, 222, 628
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	536, 618
BseXI	GCAGC	1 cut(s)	589
BshFI	GGCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	2 cut(s)	37, 95
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	2 cut(s)	37, 95
BsnI	GGCC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	35, 40
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	2 cut(s)	537, 619
BspLI	GGNNCC	2 cut(s)	305, 572
BsrDI	GCAATG	1 cut(s)	582
BssECI	CCNNGG	4 cut(s)	289, 407, 502, 609
BssMI	GATC	2 cut(s)	35, 40
BssNAI	GTATAC	1 cut(s)	526
BssT1I	CCWWGG	3 cut(s)	289, 407, 502
Bst1107I	GTATAC	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	426, 611
Bst4CI	ACNGT	4 cut(s)	62, 185, 617, 647
Bst6I	CTCTTC	2 cut(s)	150, 536
BstDEI	CTNAG	3 cut(s)	471, 545, 627
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	16, 222, 628
BstKTI	GATC	2 cut(s)	38, 43
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	2 cut(s)	35, 40
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	2 cut(s)	426, 611
BstSCI	CCNGG	2 cut(s)	424, 609
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	35
BstZ17I	GTATAC	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	16, 222, 628
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	262, 304
Csp6I	GTAC	1 cut(s)	125
CviJI	RGCY	8 cut(s)	73, 194, 346, 424, 429, 461, 507, 599
CviKI_1	RGCY	8 cut(s)	73, 194, 346, 424, 429, 461, 507, 599
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	471, 545, 627
DpnI	GATC	2 cut(s)	37, 42
DpnII	GATC	2 cut(s)	35, 40
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	150, 536
EarI	CTCTTC	2 cut(s)	150, 536
Eco130I	CCWWGG	3 cut(s)	289, 407, 502
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	262, 304
Eco57I	CTGAAG	3 cut(s)	81, 174, 369
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	424, 609
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	3 cut(s)	289, 407, 502
ErhI	CCWWGG	3 cut(s)	289, 407, 502
FaiI	YATR	6 cut(s)	171, 173, 401, 526, 551, 606
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 111, 143
FaqI	GGGAC	2 cut(s)	37, 95
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	2 cut(s)	489, 525
Fnu4HI	GCNGC	1 cut(s)	578
FokI	GGATG	3 cut(s)	23, 209, 635
Fsp4HI	GCNGC	1 cut(s)	578
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	210, 476
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	5 cut(s)	176, 273, 283, 353, 467
Hpy166II	GTNNAC	2 cut(s)	490, 526
Hpy188I	TCNGA	4 cut(s)	40, 100, 376, 546
Hpy8I	GTNNAC	2 cut(s)	490, 526
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	4 cut(s)	62, 185, 617, 647
HpyCH4V	TGCA	2 cut(s)	383, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	3 cut(s)	471, 545, 627
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	35, 40
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	3 cut(s)	26, 231, 613
MaeI	CTAG	1 cut(s)	452
MalI	GATC	2 cut(s)	37, 42
MboI	GATC	2 cut(s)	35, 40
MboII	GAAGA	6 cut(s)	167, 286, 362, 425, 459, 523
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	5 cut(s)	90, 134, 311, 368, 483
MluNI	TGGCCA	1 cut(s)	429
MnlI	CCTC	8 cut(s)	7, 155, 224, 250, 294, 294, 539, 545
Mox20I	TGGCCA	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	2 cut(s)	6, 566
Msp20I	TGGCCA	1 cut(s)	429
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	2 cut(s)	426, 611
MvaI	CCWGG	2 cut(s)	426, 611
MwoI	GCNNNNNNNGC	1 cut(s)	605
NdeII	GATC	2 cut(s)	35, 40
NlaIV	GGNNCC	2 cut(s)	305, 572
PfeI	GAWTC	2 cut(s)	210, 476
PkrI	GCNGC	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	424, 609
PspGI	CCWGG	2 cut(s)	424, 609
PspN4I	GGNNCC	2 cut(s)	305, 572
PspPI	GGNCC	2 cut(s)	262, 304
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	6, 566
SatI	GCNGC	1 cut(s)	578
Sau3AI	GATC	2 cut(s)	35, 40
Sau96I	GGNCC	2 cut(s)	262, 304
ScaI	AGTACT	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	426, 611
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	7 cut(s)	75, 242, 286, 295, 457, 531, 572
SfaNI	GCATC	3 cut(s)	26, 231, 613
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	262, 304
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	90, 134, 311, 368, 483
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	424, 609
StyI	CCWWGG	3 cut(s)	289, 407, 502
TaaI	ACNGT	4 cut(s)	62, 185, 617, 647
TasI	AATT	5 cut(s)	90, 134, 311, 368, 483
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	210, 476
Tru1I	TTAA	2 cut(s)	6, 566
Tru9I	TTAA	2 cut(s)	6, 566
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	1 cut(s)	577
TspDTI	ATGAA	1 cut(s)	606
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	262, 304
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	2 cut(s)	311, 368
XmiI	GTMKAC	2 cut(s)	489, 525
XspI	CTAG	1 cut(s)	452
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.