Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

4846166 .. 4847348

Gene Structure 1183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0065500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTGAGGAAGTGAAGCTTTTTGGTTTTTGGGGAAGCCCTTTCAGTCGGAGAGTGGAAATGGCTCTGAAGCTGAAAGGTGTCGAATACGAGTACTTTGAAGAGGACCCGCAAAACAAGAGCGATCTGCTTCTCAAATACAACCCAGTTCACAAGAAGATCCCTGTGCTCCTACACAAAGGAAAACCAATAGCAGAGTCTGCTGTTATTCTTGAATACATCGATGAGACATGGAAGGGCTTTCCCCTATTGCCTAAAGACCCTTATCAAAGAGCCACAGCTCGGTTTTGGGCTAGGTTCGTTGAGGAAAAGTGCATGCCTGCGCTATTCAACTGCACTCTCGCGGAGGATCGTAAAAAGGATGTGGAGGAAGCTCATGAGACTCTGAAATTACTTGAAAATGAGCTTAAGGATAAGAAGTTTTTTGGGGGAGAGGACATTGGATTTGTGGACATTGTTGCTGACTTCATAGGAGGCTACTGGCTTAGAGATATTCAAGAGATTATCGGATTGGAGCTCTTAACAAAAGAGAAATTTCCCAAGCTATGTGAATGGAGCGATGAGTTTGTCAACCACGCTGTTATTAAGGAATGTCTGCCTCCTAGAGATAAGCTAATTGCTTTCTTCCGCACCCGCTTTGGTTCAAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

217

Amino Acids

25.34

Weight (kDa)

5.73

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 76	1.2e-20	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 77	4.5e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 77	6.2e-17	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	115 - 192	3.7e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	344
AciI	CCGC	4 cut(s)	110, 344, 628, 634
AclWI	GGATC	2 cut(s)	154, 357
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	6 cut(s)	101, 215, 331, 398, 497, 645
AluBI	AGCT	8 cut(s)	19, 73, 281, 374, 406, 517, 544, 613
AluI	AGCT	8 cut(s)	19, 73, 281, 374, 406, 517, 544, 613
Alw21I	GWGCWC	2 cut(s)	171, 519
Alw26I	GTCTC	2 cut(s)	221, 374
AlwI	GGATC	2 cut(s)	154, 357
AlwNI	CAGNNNCTG	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	519
Bbv12I	GWGCWC	2 cut(s)	171, 519
BcoDI	GTCTC	2 cut(s)	221, 374
BfaI	CTAG	2 cut(s)	294, 603
BfrI	CTTAAG	1 cut(s)	407
BmcAI	AGTACT	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	146, 485
BseCI	ATCGAT	1 cut(s)	222
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	146, 485
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	171, 519
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	221, 374
Bsp1286I	GDGCHC	2 cut(s)	171, 519
Bsp143I	GATC	3 cut(s)	124, 159, 349
BspACI	CCGC	4 cut(s)	110, 344, 628, 634
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	154, 357
BspTI	CTTAAG	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	146, 485
BssMI	GATC	3 cut(s)	124, 159, 349
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	317, 321
BstDEI	CTNAG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	127, 162, 352
BstMAI	GTCTC	2 cut(s)	221, 374
BstMBI	GATC	3 cut(s)	124, 159, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	319
BstUI	CGCG	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	317, 321
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	231, 316, 377
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	3 cut(s)	126, 161, 351
DpnII	GATC	3 cut(s)	124, 159, 349
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	3 cut(s)	234, 319, 380
FaiI	YATR	6 cut(s)	232, 317, 378, 470, 547, 652
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	3 cut(s)	230, 315, 376
FauI	CCCGC	2 cut(s)	117, 641
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	519
FspBI	CTAG	2 cut(s)	294, 603
GlaI	GCGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	234, 319, 380
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	197, 382
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	151, 451, 571
Hpy188I	TCNGA	4 cut(s)	51, 69, 387, 509
Hpy188III	TCNNGA	3 cut(s)	212, 377, 497
Hpy8I	GTNNAC	3 cut(s)	151, 451, 571
HpyAV	CCTTC	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	315, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	485
Hsp92II	CATG	3 cut(s)	234, 319, 380
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	124, 159, 349
LmnI	GCTCC	3 cut(s)	174, 514, 555
LpnPI	CCDG	4 cut(s)	159, 177, 333, 466
MaeI	CTAG	2 cut(s)	294, 603
MalI	GATC	3 cut(s)	126, 161, 351
MboI	GATC	3 cut(s)	124, 159, 349
MboII	GAAGA	3 cut(s)	113, 169, 616
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	171, 519
MluCI	AATT	3 cut(s)	389, 533, 615
MlyI	GAGTC	2 cut(s)	206, 376
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	7 cut(s)	97, 298, 340, 361, 427, 467, 609
MseI	TTAA	3 cut(s)	408, 521, 585
MspCI	CTTAAG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	3 cut(s)	124, 159, 349
NlaIII	CATG	3 cut(s)	234, 319, 380
NlaIV	GGNNCC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	376
PleI	GAGTC	2 cut(s)	205, 376
PpsI	GAGTC	2 cut(s)	205, 376
PpuMI	RGGWCCY	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	3 cut(s)	408, 521, 585
Sau3AI	GATC	3 cut(s)	124, 159, 349
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	206, 376
SduI	GDGCHC	2 cut(s)	171, 519
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	3 cut(s)	389, 533, 615
SsiI	CCGC	4 cut(s)	110, 344, 628, 634
SspMI	CTAG	2 cut(s)	294, 603
SstI	GAGCTC	1 cut(s)	519
TaqI	TCGA	2 cut(s)	84, 222
TasI	AATT	3 cut(s)	389, 533, 615
TatI	WGTACW	1 cut(s)	93
Tru1I	TTAA	3 cut(s)	408, 521, 585
Tru9I	TTAA	3 cut(s)	408, 521, 585
TspDTI	ATGAA	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	2 cut(s)	294, 603
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.