Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

56879330 .. 56884183

Gene Structure 4854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG306800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGTGATAATACAGAAAGCTCCCGCCGTGCTCTGGGCAACACTCTTGAACGGCGCTTCTTTTACGTCCCTTCTTTCAAGATTTACGGCGCCGTTGCTGGCCTCTACGACTATGGCTCGCCCGGCTGCAAACTCAAGAAGAATGTCCTTTCACTTTGGCATCAGATATCTCCTCGCCAAGGCCTGTTGAGAGTCCGTGAGTTCACACTCGCGGAGATTGAGCACTTTGTTGATCCTAAAGACAAATCTCACCTGAAATTCCCCAGCGTTGACAAGTTGGAACTTCTGATGTTCCCAAGGGATGAACAAAAGCCTGGGAAATCTGCAAGATTAATCAAAGTGGGTGAAGCGATTGTGGAGAATGAAACTCTTGGCTACTTCATTGGGAAAGTATATCTCTTCCTCACTCGTCTGGGTATAGACAAGAACCGTATATCTCTTCCTCACTCATTGAGGTTCAGGCAACACCTTGCTAAAGAAATGGCTCACTATGCTGCTGACTGCTGGGATGCTGAGATTGAGACTTCCTATGGCTGGATTGAGTGTGTCGGTATTGCAGATAGATCTGCATATGACTTGAAGGCTCATTCGGTTAGGACTTGTTTGATGTTACTTACAATGTTATGCTTTACTATGATAAGTCTATGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

217

Amino Acids

24.86

Weight (kDa)

8.84

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	25, 212
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	34, 179, 534
AgsI	TTSAA	3 cut(s)	50, 79, 580
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	2 cut(s)	34, 225
Alw26I	GTCTC	1 cut(s)	515
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	100, 181
ApeKI	GCWGC	2 cut(s)	126, 494
ApoI	RAATTY	1 cut(s)	257
AseI	ATTAAT	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	57, 92
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	242, 356
BanI	GGYRCC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	34, 225
BbvI	GCAGC	2 cut(s)	113, 481
BceAI	ACGGC	4 cut(s)	12, 68, 77, 103
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	515
BfoI	RGCGCY	2 cut(s)	58, 93
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	2 cut(s)	127, 495
BlsI	GCNGC	2 cut(s)	128, 496
Bme1390I	CCNGG	2 cut(s)	123, 315
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	123, 315
BmsI	GCATC	2 cut(s)	169, 499
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	178, 296, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 179, 534
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	178, 296, 314
BseGI	GGATG	2 cut(s)	307, 514
BseLI	CCNNNNNNNGG	3 cut(s)	34, 179, 534
BseMII	CTCAG	1 cut(s)	504
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	113, 481
BseYI	CCCAGC	2 cut(s)	263, 504
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	102, 183
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	34, 225
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	34, 179, 534
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	102, 183
Bsp1286I	GDGCHC	2 cut(s)	34, 225
Bsp143I	GATC	2 cut(s)	232, 563
BspACI	CCGC	2 cut(s)	25, 212
BspANI	GGCC	2 cut(s)	102, 183
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	178, 296, 314
BssMI	GATC	2 cut(s)	232, 563
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	178, 296
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	404, 444
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	100, 119
BstDEI	CTNAG	1 cut(s)	513
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	307, 514
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	2 cut(s)	58, 93
BstHHI	GCGC	2 cut(s)	57, 92
BstKTI	GATC	2 cut(s)	235, 566
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	2 cut(s)	232, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 491
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	121, 313
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	113, 481
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	102, 183
BtsCI	GGATG	2 cut(s)	307, 514
Cac8I	GCNNGC	2 cut(s)	100, 119
CfoI	GCGC	2 cut(s)	57, 92
DdeI	CTNAG	1 cut(s)	513
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	2 cut(s)	234, 565
DpnII	GATC	2 cut(s)	232, 563
Eam1104I	CTCTTC	2 cut(s)	404, 444
EarI	CTCTTC	2 cut(s)	404, 444
Eco130I	CCWWGG	2 cut(s)	178, 296
Eco147I	AGGCCT	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	178, 296
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	178, 296
FaqI	GGGAC	1 cut(s)	53
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	127, 495
FokI	GGATG	2 cut(s)	314, 521
Fsp4HI	GCNGC	2 cut(s)	127, 495
GlaI	GCGC	2 cut(s)	56, 91
GluI	GCNGC	2 cut(s)	127, 495
GsaI	CCCAGC	2 cut(s)	267, 508
HaeII	RGCGCY	2 cut(s)	58, 93
HaeIII	GGCC	2 cut(s)	102, 183
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	2 cut(s)	57, 92
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	55, 90
HinP1I	GCGC	2 cut(s)	55, 90
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	242, 356
Hpy166II	GTNNAC	2 cut(s)	204, 271
Hpy188I	TCNGA	2 cut(s)	165, 288
Hpy188III	TCNNGA	3 cut(s)	47, 79, 136
Hpy8I	GTNNAC	2 cut(s)	204, 271
HpyAV	CCTTC	2 cut(s)	81, 574
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	129, 326, 557, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 491
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	2 cut(s)	55, 90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	232, 563
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	2 cut(s)	113, 481
LweI	GCATC	2 cut(s)	169, 499
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	2 cut(s)	234, 565
MboI	GATC	2 cut(s)	232, 563
MboII	GAAGA	3 cut(s)	151, 391, 431
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	2 cut(s)	34, 225
MluCI	AATT	1 cut(s)	257
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	5 cut(s)	113, 183, 413, 447, 453
MseI	TTAA	1 cut(s)	332
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	123, 315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	123, 491
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	2 cut(s)	232, 563
NlaIV	GGNNCC	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	128, 496
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	313
PspFI	CCCAGC	2 cut(s)	263, 504
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	563
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	2 cut(s)	127, 495
Sau3AI	GATC	2 cut(s)	232, 563
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	123, 315
SduI	GDGCHC	2 cut(s)	34, 225
SetI	ASST	5 cut(s)	23, 69, 255, 458, 471
SfaNI	GCATC	2 cut(s)	169, 499
SfoI	GGCGCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	257
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	2 cut(s)	25, 212
SspDI	GGCGCC	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	121, 313
StyI	CCWWGG	2 cut(s)	178, 296
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	69
TasI	AATT	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseI	GCWGC	2 cut(s)	126, 494
TspDTI	ATGAA	4 cut(s)	318, 370, 378, 639
TspGWI	ACGGA	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	177
XapI	RAATTY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.