Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

44492672 .. 44493137

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAGATATCACCTCGCCAAGGTCTTTTGAGGGTCCGTGAATTTACCCTTGCGGAGATTGAGCACTTTGTTGACTCTGCAGACAAATCTCACCCAAAATTCTCTGACGTTGCACATTTGGAGTTTCTTATGTTCCCAAGGGATGAACAGAAGCCTGGCCATTCTGCAAGGATAATCTCACTAGGTGAAGCCGTATCTTCTGAGGATTCTAAAATTGTTGACAACGAAACCCTTGGCTACTTTGTTGGGAGAGTATACCTCTTCCTCACTTGTCTGAGTATAGACAAGAACCATTTAAGGTTCCGGCAGCAACTTGCCAATGAAATGGCTCACTATGCCCAGGACTGTTGGAATGCTGAGATTGAGACTTCCTATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

126

Amino Acids

14.49

Weight (kDa)

5.44

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	41, 98
AdeI	CACNNNGTG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	20
AjnI	CCWGG	2 cut(s)	154, 339
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	359
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	41, 98
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	3, 83, 197
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	156, 341
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	2 cut(s)	156, 341
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	35, 302
BmrFI	CCNGG	2 cut(s)	156, 341
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
BsaJI	CCNNGG	4 cut(s)	19, 137, 232, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	156, 341
BseDI	CCNNGG	4 cut(s)	19, 137, 232, 339
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	3 cut(s)	192, 266, 348
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	3 cut(s)	193, 267, 349
BspLI	GGNNCC	2 cut(s)	35, 302
BspMAI	CTGCAG	1 cut(s)	82
BssECI	CCNNGG	4 cut(s)	19, 137, 232, 339
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	3 cut(s)	19, 137, 232
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	156, 341
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	201, 275, 357
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	2 cut(s)	156, 341
BstSCI	CCNGG	2 cut(s)	154, 339
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	34
CviJI	RGCY	5 cut(s)	154, 159, 191, 237, 329
CviKI_1	RGCY	5 cut(s)	154, 159, 191, 237, 329
DdeI	CTNAG	3 cut(s)	201, 275, 357
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	3 cut(s)	19, 137, 232
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	154, 339
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	3 cut(s)	19, 137, 232
ErhI	CCWWGG	3 cut(s)	19, 137, 232
FaiI	YATR	5 cut(s)	131, 256, 281, 336, 375
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	304
HincII	GTYRAC	2 cut(s)	73, 220
HindII	GTYRAC	2 cut(s)	73, 220
HinfI	GANTC	2 cut(s)	74, 206
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	3 cut(s)	3, 83, 197
Hpy166II	GTNNAC	3 cut(s)	73, 220, 256
Hpy188I	TCNGA	3 cut(s)	106, 202, 276
Hpy8I	GTNNAC	3 cut(s)	73, 220, 256
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	4, 80, 113, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	201, 275, 357
HpySE526I	ACGT	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	141, 168, 317, 326, 353
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	108
MboII	GAAGA	2 cut(s)	189, 253
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	3 cut(s)	41, 98, 213
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	24, 24, 196, 269, 275
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	156, 341
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	156, 341
MwoI	GCNNNNNNNGC	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	35, 302
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	154, 339
PspGI	CCWGG	2 cut(s)	154, 339
PspN4I	GGNNCC	2 cut(s)	35, 302
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	308
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	156, 341
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	6 cut(s)	16, 25, 111, 187, 261, 302
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	3 cut(s)	41, 98, 213
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	154, 339
StyI	CCWWGG	3 cut(s)	19, 137, 232
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	111
TasI	AATT	3 cut(s)	41, 98, 213
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	159, 336
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	18
XapI	RAATTY	2 cut(s)	41, 98
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.