Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

8735767 .. 8736003

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGACGAGGACCTTAAAGTCTCTAGAAGCGTTGGCGCGCTTAACGTCACTAGGCAGGTGCCATCTCGTCAAGCCATGGCGAAAATGCTGCAAGAGCGGTTGTTTTACATCCCGTCCTTCAAAATCTACGACGGCGCTGCGGAAACCGCTGGGCTTTTCGACTACGGGCCTCCCGGTGTCAAGCTGAAGAACAACGTTCTTGCATTTTGGCGTCAGGTGAAGTTTAAGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

79

Amino Acids

8.87

Weight (kDa)

9.63

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	97, 140, 147
AclI	AACGTT	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	88, 137
AspLEI	GCGC	3 cut(s)	38, 40, 137
AspS9I	GGNCC	2 cut(s)	10, 167
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	75, 124
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 119, 153
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	24, 51
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	2 cut(s)	89, 138
BlsI	GCNGC	2 cut(s)	90, 139
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 167
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	108
BsePI	GCGCGC	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	75, 124
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	97, 140, 147
BspANI	GGCC	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	75
BssHII	GCGCGC	1 cut(s)	36
BssNI	GRCGYC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	3 cut(s)	38, 40, 137
BstMAI	GTCTC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 146
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	75, 124
BsuRI	GGCC	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	3 cut(s)	38, 40, 137
Cfr13I	GGNCC	2 cut(s)	10, 167
CseI	GACGC	1 cut(s)	200
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	4 cut(s)	74, 154, 169, 184
CviKI_1	RGCY	4 cut(s)	74, 154, 169, 184
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	89, 138
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	89, 138
FspBI	CTAG	2 cut(s)	24, 51
GlaI	GCGC	3 cut(s)	37, 39, 136
GluI	GCNGC	2 cut(s)	89, 138
GsaI	CCCAGC	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	3 cut(s)	38, 40, 137
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	3 cut(s)	36, 38, 135
HinP1I	GCGC	3 cut(s)	36, 38, 135
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	45, 195
HpyCH4V	TGCA	2 cut(s)	91, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 146
HpySE526I	ACGT	2 cut(s)	45, 195
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	3 cut(s)	36, 38, 135
LpnPI	CCDG	4 cut(s)	41, 135, 187, 200
Lsp1109I	GCAGC	2 cut(s)	75, 124
MaeI	CTAG	2 cut(s)	24, 51
MaeII	ACGT	2 cut(s)	45, 195
MaeIII	GTNAC	1 cut(s)	46
MbiI	CCGCTC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	199
MnlI	CCTC	1 cut(s)	180
MseI	TTAA	3 cut(s)	15, 42, 225
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	94, 146
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	75
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	90, 139
PpuMI	RGGWCCY	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	10, 167
PspPPI	RGGWCCY	1 cut(s)	10
PteI	GCGCGC	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	15, 42, 225
SatI	GCNGC	2 cut(s)	89, 138
Sau96I	GGNCC	2 cut(s)	10, 167
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	6 cut(s)	15, 48, 60, 186, 198, 219
SinI	GGWCC	1 cut(s)	10
SsiI	CCGC	3 cut(s)	97, 140, 147
SspMI	CTAG	2 cut(s)	24, 51
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	2 cut(s)	48, 198
TaqI	TCGA	1 cut(s)	159
Tru1I	TTAA	3 cut(s)	15, 42, 225
Tru9I	TTAA	3 cut(s)	15, 42, 225
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	88, 137
Tsp45I	GTSAC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	23
XspI	CTAG	2 cut(s)	24, 51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.