Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414589.1

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1039

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414589.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 646 bp

atgttatatgtgcagatatctcctcgccaaggcctgttgagagtccgtgagttcacactcgcggagattgagcactttgttgatcctaaagacaaatctcacctgaaattccccagcgttgacaagttggaacttctgatgttcccaagggatgaacaaaagcctgggaaatctgcaagattaatcaaagtgggtgaagcgattgtggagaatgaaactcttggctacttcattgggaaagtatatctcttcctcactcgtctgggtatagacaagaaccgtttgaggttcaggcaacaccttgctaaagaaatggctcactatgctgctgactgctgggatgctgagattgagacttcctatggctggattgagtgtgtcggtattgcagatagatctgcatatgacttgaaggctcattcggggaaaagtcgttttgaggcacatgaacaactttcagaaccaagagacgtggagaaattggttatatctccggtaaagaaacagattggccctgctttggggaagaagcaaaagaatgtgcttgaagctttggaggctatgaatgaagaagaaatttcaaagatgaaggctgagttagactcaaaaggggaggtggacttctttgtctgcactcttggggaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

215

Amino Acids

24.58

Weight (kDa)

6.13

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	626
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	107, 576
AfiI	CCNNNNNNNGG	4 cut(s)	29, 366, 520, 521
AgsI	TTSAA	3 cut(s)	412, 548, 582
AjiI	CACGTC	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	1 cut(s)	551
AluI	AGCT	1 cut(s)	551
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	347, 462
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	31, 511
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	107, 576
AseI	ATTAAT	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	92, 206
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	347, 462
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BsaJI	CCNNGG	3 cut(s)	28, 146, 164
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 366, 520, 521
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	3 cut(s)	28, 146, 164
BseGI	GGATG	2 cut(s)	157, 346
BseLI	CCNNNNNNNGG	4 cut(s)	29, 366, 520, 521
BseMII	CTCAG	2 cut(s)	336, 585
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	2 cut(s)	113, 336
BsgI	GTGCAG	2 cut(s)	32, 616
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	33, 513
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	4 cut(s)	29, 366, 520, 521
BsmAI	GTCTC	2 cut(s)	347, 462
BsmBI	CGTCTC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	33, 513
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	82, 395
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	33, 513
BspCNI	CTCAG	2 cut(s)	337, 586
BspFNI	CGCG	1 cut(s)	62
BspPI	GGATC	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	28, 146, 164
BssMI	GATC	2 cut(s)	82, 395
BssT1I	CCWWGG	2 cut(s)	28, 146
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	345, 594
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	157, 346
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	85, 398
BstMAI	GTCTC	2 cut(s)	347, 462
BstMBI	GATC	2 cut(s)	82, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 557
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	33, 513
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	157, 346
Cfr13I	GGNCC	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	453, 488
CviAII	CATG	1 cut(s)	446
DdeI	CTNAG	2 cut(s)	345, 594
DpnI	GATC	2 cut(s)	84, 397
DpnII	GATC	2 cut(s)	82, 395
DrdI	GACNNNNNNGTC	1 cut(s)	626
DseDI	GACNNNNNNGTC	1 cut(s)	626
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	2 cut(s)	28, 146
Eco147I	AGGCCT	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	28, 146
ErhI	CCWWGG	2 cut(s)	28, 146
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	1 cut(s)	449
FatI	CATG	1 cut(s)	445
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	164, 353
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	2 cut(s)	117, 340
HaeIII	GGCC	2 cut(s)	33, 513
HapII	CCGG	1 cut(s)	494
Hin1II	CATG	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	2 cut(s)	42, 602
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	92, 206
Hpy166II	GTNNAC	3 cut(s)	54, 121, 619
Hpy188I	TCNGA	2 cut(s)	138, 460
Hpy8I	GTNNAC	3 cut(s)	54, 121, 619
HpyAV	CCTTC	2 cut(s)	406, 583
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	5 cut(s)	13, 176, 389, 401, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 557
HpyF3I	CTNAG	2 cut(s)	345, 594
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	82, 395
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	331
MaeII	ACGT	1 cut(s)	471
MalI	GATC	2 cut(s)	84, 397
MboI	GATC	2 cut(s)	82, 395
MboII	GAAGA	4 cut(s)	241, 538, 581, 584
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	3 cut(s)	107, 479, 576
MlyI	GAGTC	2 cut(s)	51, 596
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	33, 263, 279, 433, 550, 607
MseI	TTAA	1 cut(s)	182
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	323, 557
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	82, 395
NlaIII	CATG	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	50, 596
PpsI	GAGTC	2 cut(s)	50, 596
PshBI	ATTAAT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	2 cut(s)	113, 336
PspGI	CCWGG	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	82, 395
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	2 cut(s)	51, 596
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	6 cut(s)	105, 290, 303, 474, 553, 618
SfaNI	GCATC	1 cut(s)	331
Sse9I	AATT	3 cut(s)	107, 479, 576
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	2 cut(s)	28, 146
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	474
TasI	AATT	3 cut(s)	107, 479, 576
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	7 cut(s)	168, 220, 228, 462, 578, 582, 602
TspGWI	ACGGA	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	2 cut(s)	107, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.