Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

26830624 .. 26831029

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG167600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTCCCAAGGGATGAACAGAAGCCTGGCCATTCTACAAGGATAATCTCACTAGGTGAAGCCGTATCTTCTAAGGATTCTAAAATTGTTGACAACGAAACCCTTGGCTACTTTATTGGGAGAGTATACCTCTTCCTCACTTGTCTGAGTATAGACAAGAACCATTTAAGGTTCCGGCAGCACCTTGCCAATGAAATGGCTCACTATGCTCAGGACTATTGGGATGCTGAGATTGAGACTTCCTACGGTTGGATTGAGTGCGTTGGTATTGCAGAAAGATCTGCATATGACTTGAAGGCTCATTCGGTAAGGATTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

106

Amino Acids

12.23

Weight (kDa)

5.91

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
Bpu10I	CCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	8, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	8, 103
BseGI	GGATG	2 cut(s)	19, 229
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	137, 219, 224
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	3 cut(s)	138, 220, 223
BspLI	GGNNCC	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	8, 103
BssMI	GATC	1 cut(s)	278
BssNAI	GTATAC	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	8, 103
Bst1107I	GTATAC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	137
BstDEI	CTNAG	4 cut(s)	72, 146, 210, 228
BstF5I	GGATG	2 cut(s)	19, 229
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	19, 229
CviJI	RGCY	6 cut(s)	25, 30, 62, 108, 200, 299
CviKI_1	RGCY	6 cut(s)	25, 30, 62, 108, 200, 299
DdeI	CTNAG	4 cut(s)	72, 146, 210, 228
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
DraIII	CACNNNGTG	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	8, 103
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	8, 103
ErhI	CCWWGG	2 cut(s)	8, 103
FaiI	YATR	5 cut(s)	127, 152, 207, 286, 288
FauNDI	CATATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	26, 236
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	91, 127
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	91, 127
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	272, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	4 cut(s)	72, 146, 210, 228
Kzo9I	GATC	1 cut(s)	278
LpnPI	CCDG	4 cut(s)	12, 39, 188, 197
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	53
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	2 cut(s)	60, 124
MflI	RGATCY	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	140, 146
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	2 cut(s)	167, 319
Msp20I	TGGCCA	1 cut(s)	30
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	167, 319
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	4 cut(s)	58, 132, 173, 186
SfaNI	GCATC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	2 cut(s)	8, 103
TaaI	ACNGT	1 cut(s)	248
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	167, 319
Tru9I	TTAA	2 cut(s)	167, 319
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	30, 207
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.