Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

26820895 .. 26821637

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG167500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCGCATGCATCCTCACTTCAGATACCAACTGGTCACGGTTTGTTCAGCCGAGGACCCGTTCCACAAAACCCTCTCCGAGAAGGTTTCGAAGGTCGAGAGACAGGGCAACCAGGTCCCCGCTGTGAAGAAAGCCGGCGCCGCCAAGACGGTACTTGACGTCGCCATTGAGGCCATGAACGCGCTGAAGCTTGAGAAGGCTTCGATCGAGAAAGACCTTCAAGCAACGATCAGCGGCTCCGTTAACAAGGAGGCGTTACGTCAGGCTGTGGTTAATACTCTGGAGCGCTGTTTGTTTTATATTCCGTCTTTCAAGATTTACAGCGGCGGTGCTGGCCTCTACGACTACGGCCCTCCGGGTTTCGCCGTCAAGTCCAATGTCCTAGGCTTTTGGATTCAGGTAATTGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

137

Amino Acids

15.13

Weight (kDa)

9.25

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	1 cut(s)	182
AciI	CCGC	5 cut(s)	120, 141, 234, 324, 327
AcuI	CTGAAG	2 cut(s)	4, 206
AcyI	GRCGYC	2 cut(s)	138, 159
AfaI	GTAC	1 cut(s)	153
AfeI	AGCGCT	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	221, 313
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	287
AoxI	GGCC	3 cut(s)	171, 334, 349
AspA2I	CCTAGG	1 cut(s)	382
AspLEI	GCGC	4 cut(s)	6, 140, 184, 288
AspS9I	GGNCC	3 cut(s)	55, 115, 350
AsuC2I	CCSGG	1 cut(s)	357
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	55, 115
AvrII	CCTAGG	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	350, 364
BciT130I	CCWGG	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	383
BfoI	RGCGCY	2 cut(s)	141, 289
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	141, 235, 325
BlnI	CCTAGG	1 cut(s)	382
BlsI	GCNGC	3 cut(s)	142, 236, 326
Bme1390I	CCNGG	2 cut(s)	113, 357
Bme18I	GGWCC	2 cut(s)	55, 115
BmgT120I	GGNCC	3 cut(s)	55, 115, 350
BmiI	GGNNCC	4 cut(s)	57, 117, 139, 238
BmrFI	CCNGG	2 cut(s)	113, 357
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	138, 159
BsaJI	CCNNGG	2 cut(s)	51, 382
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	51, 382
BseGI	GGATG	1 cut(s)	10
BseNI	ACTGG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	173, 336, 351
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	135, 356
BslFI	GGGAC	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	173, 336, 351
Bsp119I	TTCGAA	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	204, 228
BspACI	CCGC	5 cut(s)	120, 141, 234, 324, 327
BspANI	GGCC	3 cut(s)	173, 336, 351
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	4 cut(s)	57, 117, 139, 238
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	51, 382
BssMI	GATC	2 cut(s)	204, 228
BssNI	GRCGYC	2 cut(s)	138, 159
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	40, 151
BstACI	GRCGYC	2 cut(s)	138, 159
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	8, 136, 334
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	2 cut(s)	141, 289
BstHHI	GCGC	4 cut(s)	6, 140, 184, 288
BstKTI	GATC	2 cut(s)	207, 231
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	204, 228
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 170, 179, 333
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	111, 355
BstUI	CGCG	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	173, 336, 351
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	8, 136, 334
CfoI	GCGC	4 cut(s)	6, 140, 184, 288
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	55, 115, 350
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	7, 175
CviQI	GTAC	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	2 cut(s)	206, 230
DpnII	GATC	2 cut(s)	204, 228
Eco130I	CCWWGG	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	55, 115
Eco47III	AGCGCT	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	4, 206
EcoO109I	RGGNCCY	2 cut(s)	55, 115
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	12
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	10, 178
FaiI	YATR	3 cut(s)	8, 176, 300
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	6, 174
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	141, 235, 325
Fsp4HI	GCNGC	3 cut(s)	141, 235, 325
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	1 cut(s)	383
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	4 cut(s)	5, 139, 183, 287
GluI	GCNGC	3 cut(s)	141, 235, 325
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	2 cut(s)	141, 289
HaeIII	GGCC	3 cut(s)	173, 336, 351
HapII	CCGG	2 cut(s)	135, 356
HhaI	GCGC	4 cut(s)	6, 140, 184, 288
Hin1I	GRCGYC	2 cut(s)	138, 159
Hin1II	CATG	2 cut(s)	10, 178
Hin6I	GCGC	4 cut(s)	4, 138, 182, 286
HinP1I	GCGC	4 cut(s)	4, 138, 182, 286
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	1 cut(s)	394
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	135, 356
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	23, 79
Hpy188III	TCNNGA	4 cut(s)	97, 208, 281, 313
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	4 cut(s)	76, 85, 190, 227
HpyCH4III	ACNGT	2 cut(s)	40, 151
HpyCH4IV	ACGT	2 cut(s)	159, 259
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 170, 179, 333
HpySE526I	ACGT	2 cut(s)	159, 259
Hsp92I	GRCGYC	2 cut(s)	138, 159
Hsp92II	CATG	2 cut(s)	10, 178
HspAI	GCGC	4 cut(s)	4, 138, 182, 286
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	204, 228
LmnI	GCTCC	2 cut(s)	242, 283
LweI	GCATC	1 cut(s)	19
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	2 cut(s)	159, 259
MaeIII	GTNAC	2 cut(s)	34, 255
MalI	GATC	2 cut(s)	206, 230
MboI	GATC	2 cut(s)	204, 228
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	1 cut(s)	402
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	7 cut(s)	24, 46, 83, 163, 244, 347, 363
Mph1103I	ATGCAT	1 cut(s)	12
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	2 cut(s)	243, 273
MspA1I	CMGCKG	3 cut(s)	122, 234, 324
MspI	CCGG	2 cut(s)	135, 356
MspR9I	CCNGG	2 cut(s)	113, 357
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	140, 170, 179, 333
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	204, 228
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	10, 178
NlaIV	GGNNCC	4 cut(s)	57, 117, 139, 238
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	34
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	3 cut(s)	142, 236, 326
Ple19I	CGATCG	1 cut(s)	207
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	2 cut(s)	55, 115
Psp5II	RGGWCCY	2 cut(s)	55, 115
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	4 cut(s)	57, 117, 139, 238
PspPI	GGNCC	3 cut(s)	55, 115, 350
PspPPI	RGGWCCY	2 cut(s)	55, 115
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	243, 273
SatI	GCNGC	3 cut(s)	141, 235, 325
Sau3AI	GATC	2 cut(s)	204, 228
Sau96I	GGNCC	3 cut(s)	55, 115, 350
ScrFI	CCNGG	2 cut(s)	113, 357
SetI	ASST	8 cut(s)	87, 96, 117, 162, 192, 219, 262, 402
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	19
SfoI	GGCGCC	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	2 cut(s)	55, 115
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	5 cut(s)	120, 141, 234, 324, 327
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	111, 355
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	40, 151
TaiI	ACGT	2 cut(s)	162, 262
TaqI	TCGA	4 cut(s)	89, 96, 203, 207
TasI	AATT	1 cut(s)	402
TauI	GCSGC	3 cut(s)	143, 237, 327
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	243, 273
Tru9I	TTAA	2 cut(s)	243, 273
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	2 cut(s)	229, 294
VpaK11BI	GGWCC	2 cut(s)	55, 115
XceI	RCATGY	1 cut(s)	10
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	383
ZraI	GACGTC	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.