RLG00000016357

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
5878410 .. 5883906
5497 bp
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UTR
Exon/CDS
Intron
RLM00000016357

Sequence Viewer

Length: 906 bp
ATGGAACCGCATGACGCCGCTGTTCCACGCACAGACGAACTCTCCTCTGTCTTCTGCCTCAACTCTCTTGGCGTCAGCAACGATCTGGATCAGTTTTTGGGCGACACAATCCGGATCAGCCTCTTTAAGACGGAACTTGACACCGCCATTGAGGCCTTGAACACCATTTTGTGCTGCAAGAGAACATGTTGGAAGTTGACTGCATGCCCTTGTGTTACACCTGAGGTTTTGAAGGCATGCATCTGTGCCGTCGTCGACGTCGAAGCTCAATCTGAGGCCACCGGAATTCGTCTCTCTCTCTCTCTCTCTCCTCTCTCTCGTCAGCACCATCATCGAGACTCAACCCGAGGCCACCAGAATCGCGCCCTCGTTGAAGCTCAATCCGAGGCCACGGAATCCGTCTCTCTCTCTCGTCAAAGCCGTCGTCGAGGCTCAATCCAAGGCCACTGGAATCCCGCCGTCGTCGTGCAGCACGGTTCCGACTCAGACAGCGACACCGACGTGCAGCCCAAATTTCGATTCCAGTTTCTGAGTTCGACGTGCAGCAGCGACTCCGACGCCGACAGCGACTCCAAAGCTGACAGCCGGGAACTGCTGACCCGGGTCTCTGGGAGTGCAGGTCTACAACCGGCGAAGAAGAAGAAGAGAAGGGAAACCAGATCAGCAACAGAGGTCGAGCTCCGATTTGCTCTGATTTGGTGTGAGTCCGAGAGCTACAGTAGATGCAGCGCCCATGTGAGGGAGTCTGAGAGCTGTAGTAGCTTCTCGTGCCGGAGATTTGATGCAGAAGGCGCTTCCAGCTTGATGAAGTTATTTCCGCGATCGGCTGCCGGGAGTTTCTATGTTCAGGCGCGTCAAGATTGGAGACGGAAGCGGAGATTGGAGACGGTCGAAATTTGCAGGTGA

Protein Analysis

302

Amino Acids

33.54

Weight (kDa)

7.92

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 891
AatII GACGTC 1 cut(s) 261
Acc36I ACCTGC 2 cut(s) 608, 891
AccI GTMKAC 2 cut(s) 255, 622
AccII CGCG 3 cut(s) 363, 820, 853
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 6 cut(s) 8, 18, 144, 456, 818, 874
AclWI GGATC 2 cut(s) 96, 122
AcsI RAATTY 3 cut(s) 285, 512, 894
AcyI GRCGYC 4 cut(s) 15, 72, 258, 558
AfiI CCNNNNNNNGG 2 cut(s) 738, 739
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 3 cut(s) 160, 232, 374
AjiI CACGTC 2 cut(s) 502, 540
AjuI GAANNNNNNNTTGG 4 cut(s) 503, 535, 863, 895
AleI CACNNNNGTG 1 cut(s) 500
AluBI AGCT 8 cut(s) 266, 377, 578, 679, 714, 753, 762, 801
AluI AGCT 8 cut(s) 266, 377, 578, 679, 714, 753, 762, 801
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 6 cut(s) 296, 330, 406, 610, 859, 878
AlwI GGATC 2 cut(s) 96, 122
AlwNI CAGNNNCTG 1 cut(s) 529
Ama87I CYCGRG 2 cut(s) 345, 600
Aor13HI TCCGGA 1 cut(s) 111
AoxI GGCC 5 cut(s) 153, 276, 349, 387, 442
ApeKI GCWGC 7 cut(s) 174, 469, 505, 543, 546, 726, 827
ApoI RAATTY 3 cut(s) 285, 512, 894
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AspLEI GCGC 4 cut(s) 365, 731, 794, 853
AsuC2I CCSGG 4 cut(s) 587, 601, 602, 832
AvaI CYCGRG 2 cut(s) 345, 600
AxyI CCTNAGG 1 cut(s) 222
BanII GRGCYC 1 cut(s) 681
BauI CACGAG 1 cut(s) 766
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 7 cut(s) 161, 481, 517, 555, 558, 738, 814
BccI CCATC 1 cut(s) 336
BceAI ACGGC 3 cut(s) 233, 405, 443
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BcnI CCSGG 4 cut(s) 587, 601, 602, 832
BcoDI GTCTC 6 cut(s) 296, 330, 406, 610, 859, 878
BfmI CTRYAG 2 cut(s) 715, 754
BfoI RGCGCY 2 cut(s) 732, 795
BfuAI ACCTGC 2 cut(s) 608, 891
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 8 cut(s) 18, 175, 470, 506, 544, 547, 727, 828
BlsI GCNGC 8 cut(s) 19, 176, 471, 507, 545, 548, 728, 829
Bme1390I CCNGG 4 cut(s) 587, 601, 602, 832
BmeT110I CYCGRG 2 cut(s) 345, 600
BmgBI CACGTC 2 cut(s) 502, 540
BmiI GGNNCC 2 cut(s) 6, 478
BmrFI CCNGG 4 cut(s) 587, 601, 602, 832
BmsI GCATC 3 cut(s) 249, 713, 772
BoxI GACNNNNGTC 1 cut(s) 602
BpiI GAAGAC 1 cut(s) 43
BpuMI CCSGG 4 cut(s) 587, 601, 602, 832
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 4 cut(s) 15, 72, 258, 558
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 5 cut(s) 346, 384, 390, 439, 600
BsaWI WCCGGW 2 cut(s) 111, 281
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 554, 584, 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 738, 739
Bse118I RCCGGY 1 cut(s) 628
Bse1I ACTGG 2 cut(s) 452, 523
Bse21I CCTNAGG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 111
BseDI CCNNGG 5 cut(s) 346, 384, 390, 439, 600
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 738, 739
BseMII CTCAG 5 cut(s) 213, 264, 498, 521, 738
BseNI ACTGG 2 cut(s) 452, 523
BseRI GAGGAG 2 cut(s) 34, 300
BseXI GCAGC 7 cut(s) 161, 481, 517, 555, 558, 738, 814
BsgI GTGCAG 4 cut(s) 488, 524, 562, 636
Bsh1236I CGCG 3 cut(s) 363, 820, 853
Bsh1285I CGRYCG 2 cut(s) 824, 891
BshFI GGCC 5 cut(s) 155, 278, 351, 389, 444
BsiEI CGRYCG 2 cut(s) 824, 891
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 2 cut(s) 345, 600
BsiSI CCGG 7 cut(s) 112, 282, 586, 601, 629, 772, 831
BslI CCNNNNNNNGG 2 cut(s) 738, 739
BsmAI GTCTC 6 cut(s) 296, 330, 406, 610, 859, 878
BsmBI CGTCTC 4 cut(s) 296, 406, 859, 878
BsnI GGCC 5 cut(s) 155, 278, 351, 389, 444
Bso31I GGTCTC 1 cut(s) 610
BsoBI CYCGRG 2 cut(s) 345, 600
Bsp1286I GDGCHC 1 cut(s) 681
Bsp13I TCCGGA 1 cut(s) 111
Bsp143I GATC 5 cut(s) 82, 88, 114, 659, 821
BspACI CCGC 6 cut(s) 8, 18, 144, 456, 818, 874
BspANI GGCC 5 cut(s) 155, 278, 351, 389, 444
BspCNI CTCAG 5 cut(s) 214, 265, 497, 522, 739
BspEI TCCGGA 1 cut(s) 111
BspFNI CGCG 3 cut(s) 363, 820, 853
BspLI GGNNCC 2 cut(s) 6, 478
BspMI ACCTGC 2 cut(s) 608, 891
BspPI GGATC 2 cut(s) 96, 122
BspTNI GGTCTC 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 628
BsrI ACTGG 2 cut(s) 452, 523
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 5 cut(s) 346, 384, 390, 439, 600
BssMI GATC 5 cut(s) 82, 88, 114, 659, 821
BssNI GRCGYC 4 cut(s) 15, 72, 258, 558
BssSI CACGAG 1 cut(s) 766
BssT1I CCWWGG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 766
Bst4CI ACNGT 3 cut(s) 476, 719, 889
Bst6I CTCTTC 1 cut(s) 638
BstACI GRCGYC 4 cut(s) 15, 72, 258, 558
BstC8I GCNNGC 2 cut(s) 205, 238
BstDEI CTNAG 5 cut(s) 222, 273, 484, 530, 747
BstDSI CCRYGG 1 cut(s) 390
BstFNI CGCG 3 cut(s) 363, 820, 853
BstH2I RGCGCY 2 cut(s) 732, 795
BstHHI GCGC 4 cut(s) 365, 731, 794, 853
BstKTI GATC 5 cut(s) 85, 91, 117, 662, 824
BstMAI GTCTC 6 cut(s) 296, 330, 406, 610, 859, 878
BstMBI GATC 5 cut(s) 82, 88, 114, 659, 821
BstMCI CGRYCG 2 cut(s) 824, 891
BstMWI GCNNNNNNNGC 5 cut(s) 152, 759, 768, 791, 798
BstNSI RCATGY 3 cut(s) 189, 207, 240
BstPAI GACNNNNGTC 1 cut(s) 602
BstSCI CCNGG 4 cut(s) 585, 599, 600, 830
BstSFI CTRYAG 2 cut(s) 715, 754
BstUI CGCG 3 cut(s) 363, 820, 853
BstV1I GCAGC 7 cut(s) 161, 481, 517, 555, 558, 738, 814
BstV2I GAAGAC 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 5 cut(s) 155, 278, 351, 389, 444
BtgI CCRYGG 1 cut(s) 390
BtrI CACGTC 2 cut(s) 502, 540
BtsIMutI CAGTG 1 cut(s) 445
BveI ACCTGC 2 cut(s) 608, 891
Cac8I GCNNGC 2 cut(s) 205, 238
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 4 cut(s) 365, 731, 794, 853
Cfr10I RCCGGY 1 cut(s) 628
Cfr9I CCCGGG 1 cut(s) 600
CseI GACGC 4 cut(s) 23, 61, 566, 842
CviAII CATG 5 cut(s) 11, 186, 204, 237, 734
DdeI CTNAG 5 cut(s) 222, 273, 484, 530, 747
DpnI GATC 5 cut(s) 84, 90, 116, 661, 823
DpnII GATC 5 cut(s) 82, 88, 114, 659, 821
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 610
Eco53kI GAGCTC 1 cut(s) 679
Eco81I CCTNAGG 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 345, 600
EcoICRI GAGCTC 1 cut(s) 679
EcoRI GAATTC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 439
Esp3I CGTCTC 4 cut(s) 296, 406, 859, 878
FaeI CATG 5 cut(s) 14, 189, 207, 240, 737
FaiI YATR 6 cut(s) 12, 187, 205, 238, 735, 843
FatI CATG 5 cut(s) 10, 185, 203, 236, 733
FauI CCCGC 1 cut(s) 463
FblI GTMKAC 2 cut(s) 255, 622
Fnu4HI GCNGC 8 cut(s) 18, 175, 470, 506, 544, 547, 727, 828
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 8 cut(s) 18, 175, 470, 506, 544, 547, 727, 828
GlaI GCGC 4 cut(s) 364, 730, 793, 852
GluI GCNGC 8 cut(s) 18, 175, 470, 506, 544, 547, 727, 828
HaeII RGCGCY 2 cut(s) 732, 795
HaeIII GGCC 5 cut(s) 155, 278, 351, 389, 444
HapII CCGG 7 cut(s) 112, 282, 586, 601, 629, 772, 831
HgaI GACGC 4 cut(s) 23, 61, 566, 842
HhaI GCGC 4 cut(s) 365, 731, 794, 853
Hin1I GRCGYC 4 cut(s) 15, 72, 258, 558
Hin1II CATG 5 cut(s) 14, 189, 207, 240, 737
Hin6I GCGC 4 cut(s) 363, 729, 792, 851
HinP1I GCGC 4 cut(s) 363, 729, 792, 851
HincII GTYRAC 2 cut(s) 198, 256
HindII GTYRAC 2 cut(s) 198, 256
HpaII CCGG 7 cut(s) 112, 282, 586, 601, 629, 772, 831
Hpy166II GTNNAC 3 cut(s) 198, 256, 623
Hpy188III TCNNGA 4 cut(s) 86, 112, 335, 857
Hpy8I GTNNAC 3 cut(s) 198, 256, 623
HpyAV CCTTC 3 cut(s) 226, 642, 782
HpyCH4III ACNGT 3 cut(s) 476, 719, 889
HpyCH4IV ACGT 3 cut(s) 258, 501, 539
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 759, 768, 791, 798
HpyF3I CTNAG 5 cut(s) 222, 273, 484, 530, 747
HpySE526I ACGT 3 cut(s) 258, 501, 539
Hsp92I GRCGYC 4 cut(s) 15, 72, 258, 558
Hsp92II CATG 5 cut(s) 14, 189, 207, 240, 737
HspAI GCGC 4 cut(s) 363, 729, 792, 851
Kpn2I TCCGGA 1 cut(s) 111
Kzo9I GATC 5 cut(s) 82, 88, 114, 659, 821
LmnI GCTCC 1 cut(s) 684
Lsp1109I GCAGC 7 cut(s) 161, 481, 517, 555, 558, 738, 814
LweI GCATC 3 cut(s) 249, 713, 772
MaeII ACGT 3 cut(s) 258, 501, 539
MaeIII GTNAC 1 cut(s) 214
MalI GATC 5 cut(s) 84, 90, 116, 661, 823
MboI GATC 5 cut(s) 82, 88, 114, 659, 821
MboII GAAGA 5 cut(s) 43, 646, 649, 652, 655
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 3 cut(s) 285, 512, 894
MlyI GAGTC 6 cut(s) 332, 476, 545, 563, 713, 752
MmeI TCCRAC 3 cut(s) 170, 504, 579
Mph1103I ATGCAT 1 cut(s) 242
MroI TCCGGA 1 cut(s) 111
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 7 cut(s) 112, 282, 586, 601, 629, 772, 831
MspR9I CCNGG 4 cut(s) 587, 601, 602, 832
MvnI CGCG 3 cut(s) 363, 820, 853
MwoI GCNNNNNNNGC 5 cut(s) 152, 759, 768, 791, 798
NciI CCSGG 4 cut(s) 587, 601, 602, 832
NdeII GATC 5 cut(s) 82, 88, 114, 659, 821
NlaIII CATG 5 cut(s) 14, 189, 207, 240, 737
NlaIV GGNNCC 2 cut(s) 6, 478
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 3 cut(s) 189, 207, 240
OliI CACNNNNGTG 1 cut(s) 500
PaeI GCATGC 2 cut(s) 207, 240
PaqCI CACCTGC 1 cut(s) 891
PceI AGGCCT 1 cut(s) 155
PciI ACATGT 1 cut(s) 185
PcsI WCGNNNNNNNCGW 3 cut(s) 258, 418, 564
PfeI GAWTC 4 cut(s) 358, 395, 451, 519
PkrI GCNGC 8 cut(s) 19, 176, 471, 507, 545, 548, 728, 829
Ple19I CGATCG 1 cut(s) 824
PleI GAGTC 6 cut(s) 332, 476, 545, 563, 712, 751
PpsI GAGTC 6 cut(s) 332, 476, 545, 563, 712, 751
PscI ACATGT 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 681
PspN4I GGNNCC 2 cut(s) 6, 478
PstNI CAGNNNCTG 1 cut(s) 529
PvuI CGATCG 1 cut(s) 824
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 681
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 8 cut(s) 18, 175, 470, 506, 544, 547, 727, 828
Sau3AI GATC 5 cut(s) 82, 88, 114, 659, 821
SchI GAGTC 6 cut(s) 332, 476, 545, 563, 713, 752
ScrFI CCNGG 4 cut(s) 587, 601, 602, 832
SduI GDGCHC 1 cut(s) 681
SfaNI GCATC 3 cut(s) 249, 713, 772
SfcI CTRYAG 2 cut(s) 715, 754
SgrDI CGTCGACG 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 500
SphI GCATGC 2 cut(s) 207, 240
Sse9I AATT 3 cut(s) 285, 512, 894
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 6 cut(s) 8, 18, 144, 456, 818, 874
SstI GAGCTC 1 cut(s) 681
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 4 cut(s) 585, 599, 600, 830
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 3 cut(s) 476, 719, 889
TaiI ACGT 3 cut(s) 261, 504, 542
TaqI TCGA 8 cut(s) 255, 261, 334, 427, 517, 536, 675, 891
TasI AATT 3 cut(s) 285, 512, 894
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 4 cut(s) 358, 395, 451, 519
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 452
TseI GCWGC 7 cut(s) 174, 469, 505, 543, 546, 726, 827
TspDTI ATGAA 1 cut(s) 821
TspGWI ACGGA 4 cut(s) 146, 388, 407, 883
TspMI CCCGGG 1 cut(s) 600
TspRI CASTG 1 cut(s) 452
XapI RAATTY 3 cut(s) 285, 512, 894
XceI RCATGY 3 cut(s) 189, 207, 240
XmaI CCCGGG 1 cut(s) 600
XmiI GTMKAC 2 cut(s) 255, 622
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.