Rop guanine nucleotide exchange factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740 |
| fragaria_vesca | FvH4_4g22610 |
| pyrus_communis | pycom13g12520 |
| rosa_chinensis | RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321 |
| rosa_laevigata | RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245 |
| rosa_multiflora | Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830 |
| rosa_rugosa | Rorug03G0065500 |
| rosa_samantha | Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 891 |
| AatII | GACGTC | 1 cut(s) | 261 |
| Acc36I | ACCTGC | 2 cut(s) | 608, 891 |
| AccI | GTMKAC | 2 cut(s) | 255, 622 |
| AccII | CGCG | 3 cut(s) | 363, 820, 853 |
| AccIII | TCCGGA | 1 cut(s) | 111 |
| AciI | CCGC | 6 cut(s) | 8, 18, 144, 456, 818, 874 |
| AclWI | GGATC | 2 cut(s) | 96, 122 |
| AcsI | RAATTY | 3 cut(s) | 285, 512, 894 |
| AcyI | GRCGYC | 4 cut(s) | 15, 72, 258, 558 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 738, 739 |
| AflIII | ACRYGT | 1 cut(s) | 185 |
| AgsI | TTSAA | 3 cut(s) | 160, 232, 374 |
| AjiI | CACGTC | 2 cut(s) | 502, 540 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 503, 535, 863, 895 |
| AleI | CACNNNNGTG | 1 cut(s) | 500 |
| AluBI | AGCT | 8 cut(s) | 266, 377, 578, 679, 714, 753, 762, 801 |
| AluI | AGCT | 8 cut(s) | 266, 377, 578, 679, 714, 753, 762, 801 |
| Alw21I | GWGCWC | 1 cut(s) | 681 |
| Alw26I | GTCTC | 6 cut(s) | 296, 330, 406, 610, 859, 878 |
| AlwI | GGATC | 2 cut(s) | 96, 122 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 529 |
| Ama87I | CYCGRG | 2 cut(s) | 345, 600 |
| Aor13HI | TCCGGA | 1 cut(s) | 111 |
| AoxI | GGCC | 5 cut(s) | 153, 276, 349, 387, 442 |
| ApeKI | GCWGC | 7 cut(s) | 174, 469, 505, 543, 546, 726, 827 |
| ApoI | RAATTY | 3 cut(s) | 285, 512, 894 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 409, 441 |
| AspLEI | GCGC | 4 cut(s) | 365, 731, 794, 853 |
| AsuC2I | CCSGG | 4 cut(s) | 587, 601, 602, 832 |
| AvaI | CYCGRG | 2 cut(s) | 345, 600 |
| AxyI | CCTNAGG | 1 cut(s) | 222 |
| BanII | GRGCYC | 1 cut(s) | 681 |
| BauI | CACGAG | 1 cut(s) | 766 |
| BbsI | GAAGAC | 1 cut(s) | 43 |
| Bbv12I | GWGCWC | 1 cut(s) | 681 |
| BbvI | GCAGC | 7 cut(s) | 161, 481, 517, 555, 558, 738, 814 |
| BccI | CCATC | 1 cut(s) | 336 |
| BceAI | ACGGC | 3 cut(s) | 233, 405, 443 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 314, 348 |
| BcnI | CCSGG | 4 cut(s) | 587, 601, 602, 832 |
| BcoDI | GTCTC | 6 cut(s) | 296, 330, 406, 610, 859, 878 |
| BfmI | CTRYAG | 2 cut(s) | 715, 754 |
| BfoI | RGCGCY | 2 cut(s) | 732, 795 |
| BfuAI | ACCTGC | 2 cut(s) | 608, 891 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 152 |
| BisI | GCNGC | 8 cut(s) | 18, 175, 470, 506, 544, 547, 727, 828 |
| BlsI | GCNGC | 8 cut(s) | 19, 176, 471, 507, 545, 548, 728, 829 |
| Bme1390I | CCNGG | 4 cut(s) | 587, 601, 602, 832 |
| BmeT110I | CYCGRG | 2 cut(s) | 345, 600 |
| BmgBI | CACGTC | 2 cut(s) | 502, 540 |
| BmiI | GGNNCC | 2 cut(s) | 6, 478 |
| BmrFI | CCNGG | 4 cut(s) | 587, 601, 602, 832 |
| BmsI | GCATC | 3 cut(s) | 249, 713, 772 |
| BoxI | GACNNNNGTC | 1 cut(s) | 602 |
| BpiI | GAAGAC | 1 cut(s) | 43 |
| BpuMI | CCSGG | 4 cut(s) | 587, 601, 602, 832 |
| BsaBI | GATNNNNATC | 1 cut(s) | 87 |
| BsaHI | GRCGYC | 4 cut(s) | 15, 72, 258, 558 |
| BsaI | GGTCTC | 1 cut(s) | 610 |
| BsaJI | CCNNGG | 5 cut(s) | 346, 384, 390, 439, 600 |
| BsaWI | WCCGGW | 2 cut(s) | 111, 281 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 554, 584, 604, 634 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 738, 739 |
| Bse118I | RCCGGY | 1 cut(s) | 628 |
| Bse1I | ACTGG | 2 cut(s) | 452, 523 |
| Bse21I | CCTNAGG | 1 cut(s) | 222 |
| Bse8I | GATNNNNATC | 1 cut(s) | 87 |
| BseAI | TCCGGA | 1 cut(s) | 111 |
| BseDI | CCNNGG | 5 cut(s) | 346, 384, 390, 439, 600 |
| BseJI | GATNNNNATC | 1 cut(s) | 87 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 738, 739 |
| BseMII | CTCAG | 5 cut(s) | 213, 264, 498, 521, 738 |
| BseNI | ACTGG | 2 cut(s) | 452, 523 |
| BseRI | GAGGAG | 2 cut(s) | 34, 300 |
| BseXI | GCAGC | 7 cut(s) | 161, 481, 517, 555, 558, 738, 814 |
| BsgI | GTGCAG | 4 cut(s) | 488, 524, 562, 636 |
| Bsh1236I | CGCG | 3 cut(s) | 363, 820, 853 |
| Bsh1285I | CGRYCG | 2 cut(s) | 824, 891 |
| BshFI | GGCC | 5 cut(s) | 155, 278, 351, 389, 444 |
| BsiEI | CGRYCG | 2 cut(s) | 824, 891 |
| BsiHKAI | GWGCWC | 1 cut(s) | 681 |
| BsiHKCI | CYCGRG | 2 cut(s) | 345, 600 |
| BsiSI | CCGG | 7 cut(s) | 112, 282, 586, 601, 629, 772, 831 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 738, 739 |
| BsmAI | GTCTC | 6 cut(s) | 296, 330, 406, 610, 859, 878 |
| BsmBI | CGTCTC | 4 cut(s) | 296, 406, 859, 878 |
| BsnI | GGCC | 5 cut(s) | 155, 278, 351, 389, 444 |
| Bso31I | GGTCTC | 1 cut(s) | 610 |
| BsoBI | CYCGRG | 2 cut(s) | 345, 600 |
| Bsp1286I | GDGCHC | 1 cut(s) | 681 |
| Bsp13I | TCCGGA | 1 cut(s) | 111 |
| Bsp143I | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| BspACI | CCGC | 6 cut(s) | 8, 18, 144, 456, 818, 874 |
| BspANI | GGCC | 5 cut(s) | 155, 278, 351, 389, 444 |
| BspCNI | CTCAG | 5 cut(s) | 214, 265, 497, 522, 739 |
| BspEI | TCCGGA | 1 cut(s) | 111 |
| BspFNI | CGCG | 3 cut(s) | 363, 820, 853 |
| BspLI | GGNNCC | 2 cut(s) | 6, 478 |
| BspMI | ACCTGC | 2 cut(s) | 608, 891 |
| BspPI | GGATC | 2 cut(s) | 96, 122 |
| BspTNI | GGTCTC | 1 cut(s) | 610 |
| BsrFI | RCCGGY | 1 cut(s) | 628 |
| BsrI | ACTGG | 2 cut(s) | 452, 523 |
| BssAI | RCCGGY | 1 cut(s) | 628 |
| BssECI | CCNNGG | 5 cut(s) | 346, 384, 390, 439, 600 |
| BssMI | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| BssNI | GRCGYC | 4 cut(s) | 15, 72, 258, 558 |
| BssSI | CACGAG | 1 cut(s) | 766 |
| BssT1I | CCWWGG | 1 cut(s) | 439 |
| Bst2BI | CACGAG | 1 cut(s) | 766 |
| Bst4CI | ACNGT | 3 cut(s) | 476, 719, 889 |
| Bst6I | CTCTTC | 1 cut(s) | 638 |
| BstACI | GRCGYC | 4 cut(s) | 15, 72, 258, 558 |
| BstC8I | GCNNGC | 2 cut(s) | 205, 238 |
| BstDEI | CTNAG | 5 cut(s) | 222, 273, 484, 530, 747 |
| BstDSI | CCRYGG | 1 cut(s) | 390 |
| BstFNI | CGCG | 3 cut(s) | 363, 820, 853 |
| BstH2I | RGCGCY | 2 cut(s) | 732, 795 |
| BstHHI | GCGC | 4 cut(s) | 365, 731, 794, 853 |
| BstKTI | GATC | 5 cut(s) | 85, 91, 117, 662, 824 |
| BstMAI | GTCTC | 6 cut(s) | 296, 330, 406, 610, 859, 878 |
| BstMBI | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| BstMCI | CGRYCG | 2 cut(s) | 824, 891 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 152, 759, 768, 791, 798 |
| BstNSI | RCATGY | 3 cut(s) | 189, 207, 240 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 602 |
| BstSCI | CCNGG | 4 cut(s) | 585, 599, 600, 830 |
| BstSFI | CTRYAG | 2 cut(s) | 715, 754 |
| BstUI | CGCG | 3 cut(s) | 363, 820, 853 |
| BstV1I | GCAGC | 7 cut(s) | 161, 481, 517, 555, 558, 738, 814 |
| BstV2I | GAAGAC | 1 cut(s) | 43 |
| Bsu36I | CCTNAGG | 1 cut(s) | 222 |
| BsuRI | GGCC | 5 cut(s) | 155, 278, 351, 389, 444 |
| BtgI | CCRYGG | 1 cut(s) | 390 |
| BtrI | CACGTC | 2 cut(s) | 502, 540 |
| BtsIMutI | CAGTG | 1 cut(s) | 445 |
| BveI | ACCTGC | 2 cut(s) | 608, 891 |
| Cac8I | GCNNGC | 2 cut(s) | 205, 238 |
| CaiI | CAGNNNCTG | 1 cut(s) | 529 |
| CfoI | GCGC | 4 cut(s) | 365, 731, 794, 853 |
| Cfr10I | RCCGGY | 1 cut(s) | 628 |
| Cfr9I | CCCGGG | 1 cut(s) | 600 |
| CseI | GACGC | 4 cut(s) | 23, 61, 566, 842 |
| CviAII | CATG | 5 cut(s) | 11, 186, 204, 237, 734 |
| DdeI | CTNAG | 5 cut(s) | 222, 273, 484, 530, 747 |
| DpnI | GATC | 5 cut(s) | 84, 90, 116, 661, 823 |
| DpnII | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| Eam1104I | CTCTTC | 1 cut(s) | 638 |
| EarI | CTCTTC | 1 cut(s) | 638 |
| Ecl136II | GAGCTC | 1 cut(s) | 679 |
| Eco130I | CCWWGG | 1 cut(s) | 439 |
| Eco147I | AGGCCT | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 681 |
| Eco31I | GGTCTC | 1 cut(s) | 610 |
| Eco53kI | GAGCTC | 1 cut(s) | 679 |
| Eco81I | CCTNAGG | 1 cut(s) | 222 |
| Eco88I | CYCGRG | 2 cut(s) | 345, 600 |
| EcoICRI | GAGCTC | 1 cut(s) | 679 |
| EcoRI | GAATTC | 1 cut(s) | 285 |
| EcoT14I | CCWWGG | 1 cut(s) | 439 |
| EcoT22I | ATGCAT | 1 cut(s) | 242 |
| EcoT38I | GRGCYC | 1 cut(s) | 681 |
| ErhI | CCWWGG | 1 cut(s) | 439 |
| Esp3I | CGTCTC | 4 cut(s) | 296, 406, 859, 878 |
| FaeI | CATG | 5 cut(s) | 14, 189, 207, 240, 737 |
| FaiI | YATR | 6 cut(s) | 12, 187, 205, 238, 735, 843 |
| FatI | CATG | 5 cut(s) | 10, 185, 203, 236, 733 |
| FauI | CCCGC | 1 cut(s) | 463 |
| FblI | GTMKAC | 2 cut(s) | 255, 622 |
| Fnu4HI | GCNGC | 8 cut(s) | 18, 175, 470, 506, 544, 547, 727, 828 |
| FriOI | GRGCYC | 1 cut(s) | 681 |
| Fsp4HI | GCNGC | 8 cut(s) | 18, 175, 470, 506, 544, 547, 727, 828 |
| GlaI | GCGC | 4 cut(s) | 364, 730, 793, 852 |
| GluI | GCNGC | 8 cut(s) | 18, 175, 470, 506, 544, 547, 727, 828 |
| HaeII | RGCGCY | 2 cut(s) | 732, 795 |
| HaeIII | GGCC | 5 cut(s) | 155, 278, 351, 389, 444 |
| HapII | CCGG | 7 cut(s) | 112, 282, 586, 601, 629, 772, 831 |
| HgaI | GACGC | 4 cut(s) | 23, 61, 566, 842 |
| HhaI | GCGC | 4 cut(s) | 365, 731, 794, 853 |
| Hin1I | GRCGYC | 4 cut(s) | 15, 72, 258, 558 |
| Hin1II | CATG | 5 cut(s) | 14, 189, 207, 240, 737 |
| Hin6I | GCGC | 4 cut(s) | 363, 729, 792, 851 |
| HinP1I | GCGC | 4 cut(s) | 363, 729, 792, 851 |
| HincII | GTYRAC | 2 cut(s) | 198, 256 |
| HindII | GTYRAC | 2 cut(s) | 198, 256 |
| HpaII | CCGG | 7 cut(s) | 112, 282, 586, 601, 629, 772, 831 |
| Hpy166II | GTNNAC | 3 cut(s) | 198, 256, 623 |
| Hpy188III | TCNNGA | 4 cut(s) | 86, 112, 335, 857 |
| Hpy8I | GTNNAC | 3 cut(s) | 198, 256, 623 |
| HpyAV | CCTTC | 3 cut(s) | 226, 642, 782 |
| HpyCH4III | ACNGT | 3 cut(s) | 476, 719, 889 |
| HpyCH4IV | ACGT | 3 cut(s) | 258, 501, 539 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 152, 759, 768, 791, 798 |
| HpyF3I | CTNAG | 5 cut(s) | 222, 273, 484, 530, 747 |
| HpySE526I | ACGT | 3 cut(s) | 258, 501, 539 |
| Hsp92I | GRCGYC | 4 cut(s) | 15, 72, 258, 558 |
| Hsp92II | CATG | 5 cut(s) | 14, 189, 207, 240, 737 |
| HspAI | GCGC | 4 cut(s) | 363, 729, 792, 851 |
| Kpn2I | TCCGGA | 1 cut(s) | 111 |
| Kzo9I | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| LmnI | GCTCC | 1 cut(s) | 684 |
| Lsp1109I | GCAGC | 7 cut(s) | 161, 481, 517, 555, 558, 738, 814 |
| LweI | GCATC | 3 cut(s) | 249, 713, 772 |
| MaeII | ACGT | 3 cut(s) | 258, 501, 539 |
| MaeIII | GTNAC | 1 cut(s) | 214 |
| MalI | GATC | 5 cut(s) | 84, 90, 116, 661, 823 |
| MboI | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| MboII | GAAGA | 5 cut(s) | 43, 646, 649, 652, 655 |
| MhlI | GDGCHC | 1 cut(s) | 681 |
| MluCI | AATT | 3 cut(s) | 285, 512, 894 |
| MlyI | GAGTC | 6 cut(s) | 332, 476, 545, 563, 713, 752 |
| MmeI | TCCRAC | 3 cut(s) | 170, 504, 579 |
| Mph1103I | ATGCAT | 1 cut(s) | 242 |
| MroI | TCCGGA | 1 cut(s) | 111 |
| MseI | TTAA | 1 cut(s) | 126 |
| MslI | CAYNNNNRTG | 1 cut(s) | 500 |
| MspA1I | CMGCKG | 1 cut(s) | 20 |
| MspI | CCGG | 7 cut(s) | 112, 282, 586, 601, 629, 772, 831 |
| MspR9I | CCNGG | 4 cut(s) | 587, 601, 602, 832 |
| MvnI | CGCG | 3 cut(s) | 363, 820, 853 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 152, 759, 768, 791, 798 |
| NciI | CCSGG | 4 cut(s) | 587, 601, 602, 832 |
| NdeII | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| NlaIII | CATG | 5 cut(s) | 14, 189, 207, 240, 737 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 478 |
| NsiI | ATGCAT | 1 cut(s) | 242 |
| NspI | RCATGY | 3 cut(s) | 189, 207, 240 |
| OliI | CACNNNNGTG | 1 cut(s) | 500 |
| PaeI | GCATGC | 2 cut(s) | 207, 240 |
| PaqCI | CACCTGC | 1 cut(s) | 891 |
| PceI | AGGCCT | 1 cut(s) | 155 |
| PciI | ACATGT | 1 cut(s) | 185 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 258, 418, 564 |
| PfeI | GAWTC | 4 cut(s) | 358, 395, 451, 519 |
| PkrI | GCNGC | 8 cut(s) | 19, 176, 471, 507, 545, 548, 728, 829 |
| Ple19I | CGATCG | 1 cut(s) | 824 |
| PleI | GAGTC | 6 cut(s) | 332, 476, 545, 563, 712, 751 |
| PpsI | GAGTC | 6 cut(s) | 332, 476, 545, 563, 712, 751 |
| PscI | ACATGT | 1 cut(s) | 185 |
| PshAI | GACNNNNGTC | 1 cut(s) | 602 |
| Psp124BI | GAGCTC | 1 cut(s) | 681 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 478 |
| PstNI | CAGNNNCTG | 1 cut(s) | 529 |
| PvuI | CGATCG | 1 cut(s) | 824 |
| RseI | CAYNNNNRTG | 1 cut(s) | 500 |
| SacI | GAGCTC | 1 cut(s) | 681 |
| SalI | GTCGAC | 1 cut(s) | 254 |
| SaqAI | TTAA | 1 cut(s) | 126 |
| SatI | GCNGC | 8 cut(s) | 18, 175, 470, 506, 544, 547, 727, 828 |
| Sau3AI | GATC | 5 cut(s) | 82, 88, 114, 659, 821 |
| SchI | GAGTC | 6 cut(s) | 332, 476, 545, 563, 713, 752 |
| ScrFI | CCNGG | 4 cut(s) | 587, 601, 602, 832 |
| SduI | GDGCHC | 1 cut(s) | 681 |
| SfaNI | GCATC | 3 cut(s) | 249, 713, 772 |
| SfcI | CTRYAG | 2 cut(s) | 715, 754 |
| SgrDI | CGTCGACG | 1 cut(s) | 254 |
| SmaI | CCCGGG | 1 cut(s) | 602 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 500 |
| SphI | GCATGC | 2 cut(s) | 207, 240 |
| Sse9I | AATT | 3 cut(s) | 285, 512, 894 |
| SseBI | AGGCCT | 1 cut(s) | 155 |
| SsiI | CCGC | 6 cut(s) | 8, 18, 144, 456, 818, 874 |
| SstI | GAGCTC | 1 cut(s) | 681 |
| StuI | AGGCCT | 1 cut(s) | 155 |
| StyD4I | CCNGG | 4 cut(s) | 585, 599, 600, 830 |
| StyI | CCWWGG | 1 cut(s) | 439 |
| TaaI | ACNGT | 3 cut(s) | 476, 719, 889 |
| TaiI | ACGT | 3 cut(s) | 261, 504, 542 |
| TaqI | TCGA | 8 cut(s) | 255, 261, 334, 427, 517, 536, 675, 891 |
| TasI | AATT | 3 cut(s) | 285, 512, 894 |
| TauI | GCSGC | 1 cut(s) | 20 |
| TfiI | GAWTC | 4 cut(s) | 358, 395, 451, 519 |
| Tru1I | TTAA | 1 cut(s) | 126 |
| Tru9I | TTAA | 1 cut(s) | 126 |
| TscAI | CASTG | 1 cut(s) | 452 |
| TseI | GCWGC | 7 cut(s) | 174, 469, 505, 543, 546, 726, 827 |
| TspDTI | ATGAA | 1 cut(s) | 821 |
| TspGWI | ACGGA | 4 cut(s) | 146, 388, 407, 883 |
| TspMI | CCCGGG | 1 cut(s) | 600 |
| TspRI | CASTG | 1 cut(s) | 452 |
| XapI | RAATTY | 3 cut(s) | 285, 512, 894 |
| XceI | RCATGY | 3 cut(s) | 189, 207, 240 |
| XmaI | CCCGGG | 1 cut(s) | 600 |
| XmiI | GTMKAC | 2 cut(s) | 255, 622 |
| ZraI | GACGTC | 1 cut(s) | 259 |
| Zsp2I | ATGCAT | 1 cut(s) | 242 |