Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Reverse (-)

66922214 .. 66923563

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTCCCAAGGGATGAACAAAAGCCCGGCCAATCTGCAAGATTAATCTCGCTGGGTGAAGTAGTGGATTCTAAGATTGTGGAGAATGAAACTCTTGGCTACTTCATCGGGAGAGTATATATCTTCCTCACTCGTCTGGATATAGACAAGAACCGTTTGAGGTTCAGGCAACACCTTGCTAAAGAAATGACTCACCATGCTGCTGACTGCTGGGATGCTGAGATTGAGACTTCCTGTGGCTGGATTGAGTGCGTCGGTATTGCAGATAGATCTGCATATGACTTGGAGGCTCATTCGGGGGAACTAAATCATAGCTCGGTTTCTACGGCTTCTTTAGCAGGTTTTTGCTCCTTATCATGGATACGCTATCCTCATCAGTGTCCATGTTATCATGGCTGTCCTTCCTACGATGGCACTCTTGAGGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

144

Amino Acids

16.17

Weight (kDa)

5.26

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	240, 357
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	68, 185
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	354
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 357
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	19, 220
BseLI	CCNNNNNNNGG	2 cut(s)	240, 357
BseMII	CTCAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	2 cut(s)	52, 210
BshFI	GGCC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	240, 357
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	72, 219
BstF5I	GGATG	2 cut(s)	19, 220
BstKTI	GATC	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	19, 220
BtsIMutI	CAGTG	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	329
CseI	GACGC	1 cut(s)	241
CviAII	CATG	4 cut(s)	197, 357, 384, 392
CviJI	RGCY	8 cut(s)	25, 30, 99, 240, 290, 315, 329, 396
CviKI_1	RGCY	8 cut(s)	25, 30, 99, 240, 290, 315, 329, 396
DdeI	CTNAG	2 cut(s)	72, 219
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	4 cut(s)	200, 360, 387, 395
FatI	CATG	4 cut(s)	196, 356, 383, 391
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	26, 227
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	2 cut(s)	56, 214
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	4 cut(s)	200, 360, 387, 395
HinfI	GANTC	2 cut(s)	68, 190
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	68, 185
Hpy188III	TCNNGA	3 cut(s)	109, 137, 419
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	38, 263, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	72, 219
Hsp92II	CATG	4 cut(s)	200, 360, 387, 395
Kzo9I	GATC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	8 cut(s)	38, 40, 122, 151, 196, 226, 247, 324
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	205
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	137, 153, 280, 381, 415
MseI	TTAA	1 cut(s)	44
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	4 cut(s)	200, 360, 387, 395
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	44
PspFI	CCCAGC	2 cut(s)	52, 210
PsuI	RGATCY	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	4 cut(s)	164, 177, 317, 343
SfaNI	GCATC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	30, 94, 102
TspRI	CASTG	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.