Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

25832918 .. 25834096

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG260500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGATGCCTCTGTTCCACGCACAGACGAATTCCTCTATCTTCTCCCTAAACTTTCTTGGCATCAGCAGCGATTTGAATCAGTTTCCTGGCGACACGATCTGGATCAGCCTCTTTAAGAAGGAACTTGACGCCGCCATTGAGGCCTTAAACTTGCTGAAGCTTGAGAAGGCTTCGATCGAGAGAAAGACCTTCAATCGATGGTCGCTCTTTAATAAGGAGGCGTATACGTCAGGCTGTGATGAATACCTGGAACGCAGTTGGTTTTATATTCCTAGGGTTTTTGCGTCAGTTTTGGTGAATGGAATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

103

Amino Acids

11.91

Weight (kDa)

6.56

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	76, 193
AjnI	CCWGG	2 cut(s)	85, 246
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	28
AspA2I	CCTAGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	307
AvrII	CCTAGG	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	87, 248
BfaI	CTAG	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	2 cut(s)	67, 132
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	2 cut(s)	68, 133
Bme1390I	CCNGG	2 cut(s)	87, 248
BmrFI	CCNGG	2 cut(s)	87, 248
BmsI	GCATC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	196
BsaBI	GATNNNNATC	2 cut(s)	75, 101
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	272
Bse8I	GATNNNNATC	2 cut(s)	75, 101
BseBI	CCWGG	2 cut(s)	87, 248
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	272
BseJI	GATNNNNATC	2 cut(s)	75, 101
BseXI	GCAGC	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	177
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	96, 102, 174
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	143
BspDI	ATCGAT	1 cut(s)	196
BspPI	GGATC	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	3 cut(s)	96, 102, 174
BssNAI	GTATAC	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	272
Bst1107I	GTATAC	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	87, 248
BstACI	GRCGYC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	99, 105, 177
BstMBI	GATC	3 cut(s)	96, 102, 174
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 140
BstNI	CCWGG	2 cut(s)	87, 248
BstSCI	CCNGG	2 cut(s)	85, 246
BstV1I	GCAGC	1 cut(s)	78
BstZ17I	GTATAC	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	2 cut(s)	137, 273
CviJI	RGCY	5 cut(s)	108, 143, 160, 170, 234
CviKI_1	RGCY	5 cut(s)	108, 143, 160, 170, 234
DpnI	GATC	3 cut(s)	98, 104, 176
DpnII	GATC	3 cut(s)	96, 102, 174
Eco130I	CCWWGG	1 cut(s)	272
Eco147I	AGGCCT	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	85, 246
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaiI	YATR	2 cut(s)	225, 267
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	67, 132
Fsp4HI	GCNGC	2 cut(s)	67, 132
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	67, 132
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	2 cut(s)	137, 273
Hin1I	GRCGYC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	100, 178
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	3 cut(s)	112, 160, 199
HpyCH4IV	ACGT	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 140
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	96, 102, 174
LpnPI	CCDG	6 cut(s)	72, 85, 99, 216, 233, 260
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	227
MalI	GATC	3 cut(s)	98, 104, 176
MboI	GATC	3 cut(s)	96, 102, 174
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	5 cut(s)	18, 43, 119, 133, 211
MseI	TTAA	3 cut(s)	114, 146, 210
MspR9I	CCNGG	2 cut(s)	87, 248
MvaI	CCWGG	2 cut(s)	87, 248
MwoI	GCNNNNNNNGC	2 cut(s)	66, 140
NdeII	GATC	3 cut(s)	96, 102, 174
PceI	AGGCCT	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	68, 133
Ple19I	CGATCG	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	85, 246
PspGI	CCWGG	2 cut(s)	85, 246
PvuI	CGATCG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	114, 146, 210
SatI	GCNGC	2 cut(s)	67, 132
Sau3AI	GATC	3 cut(s)	96, 102, 174
ScrFI	CCNGG	2 cut(s)	87, 248
SetI	ASST	4 cut(s)	162, 191, 230, 249
SfaNI	GCATC	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	28
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	85, 246
StyI	CCWWGG	1 cut(s)	272
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	173, 177, 196
TasI	AATT	1 cut(s)	28
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	3 cut(s)	114, 146, 210
Tru9I	TTAA	3 cut(s)	114, 146, 210
TseI	GCWGC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	255
XapI	RAATTY	1 cut(s)	28
XmaJI	CCTAGG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.