RLG00000034245

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004146
Physical Location & Seq
Reverse (-)
39332758 .. 39334373
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034245

Sequence Viewer

Length: 402 bp
ATGAAAAAGAAAGCAAGAGTTGAGATTAAAGAAAGTGCTCCTTTGTGTGGTTCCGGAGCCATTGACATACGGATGCAGGCTAACACAGTGATGGCAAATCTTCTCATCGCGAGTTGTGGCAACACAGGGCATTGGGGGTGCGTTGTCAACCGGTGTGCTTTTAGATCAAAGGCGGAAGAGCACTCCGACGTGCAGCCCAAATTTCGATTCCAGTTTCTGAGTTCGACGTGCAGCAGCGACTCCCACTCCGACAGCGACTCCAATGCTGACAGCCGGGAACCGCTGACCTGGGTCTCTGACAGTGCAGGTCTACAACCGGCGAAGAAGAAGAAGAGAAGGGAAACCAGATCAGCAACAGAGGTCGAGCTCCGATTTGGTTCTTTCTCTTTCCCTGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.63

Weight (kDa)

9.12

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 310
AccII CGCG 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 2 cut(s) 173, 281
AcsI RAATTY 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 47
AgeI ACCGGT 1 cut(s) 150
AjiI CACGTC 2 cut(s) 190, 228
AjnI CCWGG 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw21I GWGCWC 3 cut(s) 40, 183, 369
Alw26I GTCTC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 193, 231, 234
ApoI RAATTY 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 275
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 3 cut(s) 40, 183, 369
BbvI GCAGC 3 cut(s) 205, 243, 246
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 289
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 3 cut(s) 194, 232, 235
BlsI GCNGC 3 cut(s) 195, 233, 236
Bme1390I CCNGG 2 cut(s) 275, 289
BmgBI CACGTC 2 cut(s) 190, 228
BmiI GGNNCC 3 cut(s) 52, 58, 279
BmrFI CCNGG 2 cut(s) 275, 289
BmsI GCATC 1 cut(s) 63
BoxI GACNNNNGTC 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 2 cut(s) 53, 150
BsaXI ACNNNNNCTCC 4 cut(s) 230, 242, 260, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 2 cut(s) 150, 316
Bse1I ACTGG 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 3 cut(s) 205, 243, 246
BsgI GTGCAG 3 cut(s) 212, 250, 324
Bsh1236I CGCG 1 cut(s) 110
BshTI ACCGGT 1 cut(s) 150
BsiHKAI GWGCWC 3 cut(s) 40, 183, 369
BsiSI CCGG 4 cut(s) 54, 151, 274, 317
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 298
Bso31I GGTCTC 1 cut(s) 298
Bsp1286I GDGCHC 3 cut(s) 40, 183, 369
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 2 cut(s) 164, 347
Bsp68I TCGCGA 1 cut(s) 110
BspACI CCGC 2 cut(s) 173, 281
BspCNI CTCAG 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 53
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 52, 58, 279
BspMI ACCTGC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 298
BsrFI RCCGGY 2 cut(s) 150, 316
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 2 cut(s) 150, 316
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 164, 347
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 88, 302
Bst6I CTCTTC 2 cut(s) 171, 326
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 2 cut(s) 167, 350
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 2 cut(s) 164, 347
BstNI CCWGG 1 cut(s) 289
BstPAI GACNNNNGTC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 273, 287
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 3 cut(s) 205, 243, 246
BtgZI GCGATG 1 cut(s) 91
BtrI CACGTC 2 cut(s) 190, 228
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 93, 307
BtuMI TCGCGA 1 cut(s) 110
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 217
Cfr10I RCCGGY 2 cut(s) 150, 316
CspAI ACCGGT 1 cut(s) 150
CviJI RGCY 5 cut(s) 59, 80, 196, 273, 367
CviKI_1 RGCY 5 cut(s) 59, 80, 196, 273, 367
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 166, 349
DpnII GATC 2 cut(s) 164, 347
Eam1104I CTCTTC 2 cut(s) 171, 326
EarI CTCTTC 2 cut(s) 171, 326
EciI GGCGGA 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 369
FaiI YATR 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 194, 232, 235
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 194, 232, 235
GluI GCNGC 3 cut(s) 194, 232, 235
HapII CCGG 4 cut(s) 54, 151, 274, 317
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 207, 239, 257
HpaII CCGG 4 cut(s) 54, 151, 274, 317
Hpy166II GTNNAC 2 cut(s) 148, 311
Hpy188I TCNGA 5 cut(s) 187, 219, 250, 298, 371
Hpy188III TCNNGA 2 cut(s) 54, 109
Hpy8I GTNNAC 2 cut(s) 148, 311
Hpy99I CGWCG 2 cut(s) 191, 229
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 2 cut(s) 88, 302
HpyCH4IV ACGT 2 cut(s) 189, 227
HpyCH4V TGCA 5 cut(s) 76, 193, 231, 305, 395
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 189, 227
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 2 cut(s) 164, 347
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 43, 56, 372
Lsp1109I GCAGC 3 cut(s) 205, 243, 246
LweI GCATC 1 cut(s) 63
MaeII ACGT 2 cut(s) 189, 227
MalI GATC 2 cut(s) 166, 349
MboI GATC 2 cut(s) 164, 347
MboII GAAGA 6 cut(s) 92, 188, 334, 337, 340, 343
MhlI GDGCHC 3 cut(s) 40, 183, 369
MluCI AATT 2 cut(s) 200, 396
MlyI GAGTC 2 cut(s) 233, 251
MmeI TCCRAC 2 cut(s) 210, 273
MnlI CCTC 1 cut(s) 352
MroI TCCGGA 1 cut(s) 53
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 2 cut(s) 71, 89
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 4 cut(s) 54, 151, 274, 317
MspR9I CCNGG 2 cut(s) 275, 289
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 110
NciI CCSGG 1 cut(s) 275
NdeII GATC 2 cut(s) 164, 347
NlaIV GGNNCC 3 cut(s) 52, 58, 279
NruI TCGCGA 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 3 cut(s) 195, 233, 236
PleI GAGTC 2 cut(s) 233, 251
PpsI GAGTC 2 cut(s) 233, 251
PshAI GACNNNNGTC 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 3 cut(s) 52, 58, 279
PstNI CAGNNNCTG 1 cut(s) 217
RruI TCGCGA 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 71, 89
SacI GAGCTC 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 194, 232, 235
Sau3AI GATC 2 cut(s) 164, 347
SchI GAGTC 2 cut(s) 233, 251
ScrFI CCNGG 2 cut(s) 275, 289
SduI GDGCHC 3 cut(s) 40, 183, 369
SetI ASST 6 cut(s) 192, 230, 290, 310, 363, 369
SfaNI GCATC 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 71, 89
Sse9I AATT 2 cut(s) 200, 396
SsiI CCGC 2 cut(s) 173, 281
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 273, 287
TaaI ACNGT 2 cut(s) 88, 302
TaiI ACGT 2 cut(s) 192, 230
TaqI TCGA 3 cut(s) 205, 224, 363
TasI AATT 2 cut(s) 200, 396
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 2 cut(s) 93, 307
TseI GCWGC 3 cut(s) 193, 231, 234
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 93, 307
XapI RAATTY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.