Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

22602815 .. 22607226

Gene Structure 4412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG166700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCATCCTCACTTCAGATACCAACTGGTCACGGTTTGTTCAGCCGAGGACCCGTTCCGCAAAGCCCTCTCCGAGAAGATTTCGAAGGTCGAGAGACAGGGCAACCAGGTCCCCGCTGTGAAGAAAGCCGGGGCCGCCAAGACGAGCGGCGGTGCTGGCCTCTACGACTACGGCCCTCCTGGTTTCGCCGTCAAGTCCAATGTCCTAGGCTTTTGGCTTCAGATATCACCTCGCCAAGGTCATTTGAGGGTCCGTGAATTTACCCTTGCGGAGATTGAGCACTTTGTTGACCCTGAAGACAAATCTCACCCAAAATTCTCTGATGTTGCACATTTGGAGTTTCTTATGTTCCCAAGGGATGAACAGAAGCCTGGCCATTCTGCAAGGATAATCTCACTAGGTGAAGCCGTATCTTCTATGGAAAAAAGTAGAGTTCATCTTGAGGCACAGGAGAAATATTCTGAACCAAGAGAAGTTGAGAAATTGGCTATATCTCCTATAAAGAAAGCAATCGGTCCTGCTTTCAACAAGGACCAAAAGAAAGTAACAGAAGCTTTAGAGGTGAACTCACTCTATTGGTTTGTCATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

197

Amino Acids

22.14

Weight (kDa)

8.87

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	6 cut(s)	58, 114, 135, 147, 150, 269
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	257, 314
AcuI	CTGAAG	2 cut(s)	203, 315
AdeI	CACNNNGTG	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	526
AjnI	CCWGG	3 cut(s)	105, 178, 370
AluBI	AGCT	1 cut(s)	554
AluI	AGCT	1 cut(s)	554
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	4 cut(s)	132, 157, 172, 373
ApoI	RAATTY	2 cut(s)	257, 314
AspA2I	CCTAGG	1 cut(s)	205
AspS9I	GGNCC	7 cut(s)	49, 109, 132, 173, 250, 515, 532
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	4 cut(s)	219, 299, 413, 574
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	5 cut(s)	49, 109, 250, 515, 532
AvrII	CCTAGG	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	282
BceAI	ACGGC	3 cut(s)	173, 187, 392
BciT130I	CCWGG	3 cut(s)	107, 180, 372
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	206, 398
BisI	GCNGC	2 cut(s)	135, 148
BlnI	CCTAGG	1 cut(s)	205
BlsI	GCNGC	2 cut(s)	136, 149
Bme1390I	CCNGG	4 cut(s)	107, 130, 180, 372
Bme18I	GGWCC	5 cut(s)	49, 109, 250, 515, 532
BmgT120I	GGNCC	7 cut(s)	49, 109, 132, 173, 250, 515, 532
BmiI	GGNNCC	4 cut(s)	51, 111, 133, 251
BmrFI	CCNGG	4 cut(s)	107, 130, 180, 372
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	130
BsaJI	CCNNGG	5 cut(s)	45, 129, 205, 235, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	3 cut(s)	107, 180, 372
BseDI	CCNNGG	5 cut(s)	45, 129, 205, 235, 353
BseGI	GGATG	2 cut(s)	4, 364
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	30
BshFI	GGCC	4 cut(s)	134, 159, 174, 375
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	4 cut(s)	134, 159, 174, 375
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	282
BspACI	CCGC	6 cut(s)	58, 114, 135, 147, 150, 269
BspANI	GGCC	4 cut(s)	134, 159, 174, 375
BspLI	GGNNCC	4 cut(s)	51, 111, 133, 251
BspT104I	TTCGAA	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	5 cut(s)	45, 129, 205, 235, 353
BssT1I	CCWWGG	3 cut(s)	205, 235, 353
Bst2UI	CCWGG	3 cut(s)	107, 180, 372
Bst4CI	ACNGT	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	157
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	4, 364
BstMAI	GTCTC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 156
BstNI	CCWGG	3 cut(s)	107, 180, 372
BstSCI	CCNGG	4 cut(s)	105, 128, 178, 370
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	134, 159, 174, 375
BtsCI	GGATG	2 cut(s)	4, 364
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	7 cut(s)	49, 109, 132, 173, 250, 515, 532
CsiI	ACCWGGT	1 cut(s)	105
CviAII	CATG	1 cut(s)	591
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	373
Eco130I	CCWWGG	3 cut(s)	205, 235, 353
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	5 cut(s)	49, 109, 250, 515, 532
Eco57I	CTGAAG	2 cut(s)	203, 315
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	49, 109
EcoRII	CCWGG	3 cut(s)	105, 178, 370
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	3 cut(s)	205, 235, 353
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	205, 235, 353
FaeI	CATG	1 cut(s)	594
FaiI	YATR	5 cut(s)	347, 419, 491, 500, 592
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	590
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	135, 148
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	135, 148
FspBI	CTAG	2 cut(s)	206, 398
GluI	GCNGC	2 cut(s)	135, 148
HaeIII	GGCC	4 cut(s)	134, 159, 174, 375
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	594
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	552
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	4 cut(s)	219, 299, 413, 574
Hpy166II	GTNNAC	2 cut(s)	289, 565
Hpy188I	TCNGA	5 cut(s)	17, 73, 222, 322, 463
Hpy188III	TCNNGA	2 cut(s)	91, 440
Hpy8I	GTNNAC	2 cut(s)	289, 565
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	4, 329, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 156
Hsp92II	CATG	1 cut(s)	594
LweI	GCATC	1 cut(s)	13
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	2 cut(s)	206, 398
MaeIII	GTNAC	2 cut(s)	28, 544
MbiI	CCGCTC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	88, 133, 308, 405
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	3 cut(s)	257, 314, 482
MluNI	TGGCCA	1 cut(s)	375
MnlI	CCTC	9 cut(s)	18, 40, 77, 170, 186, 240, 240, 436, 553
Mox20I	TGGCCA	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	4 cut(s)	107, 130, 180, 372
MvaI	CCWGG	3 cut(s)	107, 180, 372
MwoI	GCNNNNNNNGC	2 cut(s)	134, 156
NciI	CCSGG	1 cut(s)	130
NlaIII	CATG	1 cut(s)	594
NlaIV	GGNNCC	4 cut(s)	51, 111, 133, 251
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	136, 149
PpuMI	RGGWCCY	2 cut(s)	49, 109
Psp5II	RGGWCCY	2 cut(s)	49, 109
Psp6I	CCWGG	3 cut(s)	105, 178, 370
PspGI	CCWGG	3 cut(s)	105, 178, 370
PspN4I	GGNNCC	4 cut(s)	51, 111, 133, 251
PspPI	GGNCC	7 cut(s)	49, 109, 132, 173, 250, 515, 532
PspPPI	RGGWCCY	2 cut(s)	49, 109
SatI	GCNGC	2 cut(s)	135, 148
Sau96I	GGNCC	7 cut(s)	49, 109, 132, 173, 250, 515, 532
ScrFI	CCNGG	4 cut(s)	107, 130, 180, 372
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	7 cut(s)	90, 111, 232, 241, 403, 556, 564
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	13
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	5 cut(s)	49, 109, 250, 515, 532
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	257, 314, 482
SsiI	CCGC	6 cut(s)	58, 114, 135, 147, 150, 269
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	2 cut(s)	206, 398
StyD4I	CCNGG	4 cut(s)	105, 128, 178, 370
StyI	CCWWGG	3 cut(s)	205, 235, 353
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	83, 90
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	3 cut(s)	257, 314, 482
TauI	GCSGC	2 cut(s)	137, 150
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	375, 425
TspGWI	ACGGA	1 cut(s)	242
VpaK11BI	GGWCC	5 cut(s)	49, 109, 250, 515, 532
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	2 cut(s)	257, 314
XmaJI	CCTAGG	1 cut(s)	205
XspI	CTAG	2 cut(s)	206, 398
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.