Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

25911286 .. 25911926

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG264600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCTCTGTTCCACGCACAGACGAACTCCTCTATCTTCTCCCTAAACTTTCTTGGCATCAGCAGCGATTTGGATCAGTTTCCTGGCGACACGATCTGGATCAGCCTCTTTAAGAAGGAACTTGACGCCGCCATTGAGGCCTTGAACTTGCTGAAGCTTGAGAAGGCTTCGATCGAGAGAAAGACCTTCAATCGATGGTCGCTCTTTAATAAGGAGGCGTATACGTCAGGCTGTGATGAACACCTGGAACGCAGTTGGTTTTATATTCCTAGGGTTTTTGCGTCAGTTTTGGTGAATGGAATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

102

Amino Acids

11.75

Weight (kDa)

6.07

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	2 cut(s)	81, 107
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	145, 190
AjnI	CCWGG	2 cut(s)	82, 243
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
AlwI	GGATC	2 cut(s)	81, 107
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	63
AspA2I	CCTAGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	304
AvrII	CCTAGG	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	189
BciT130I	CCWGG	2 cut(s)	84, 245
BfaI	CTAG	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	2 cut(s)	64, 129
BlnI	CCTAGG	1 cut(s)	269
BlsI	GCNGC	2 cut(s)	65, 130
Bme1390I	CCNGG	2 cut(s)	84, 245
BmrFI	CCNGG	2 cut(s)	84, 245
BmsI	GCATC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	193
BsaBI	GATNNNNATC	2 cut(s)	72, 98
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	269
Bse8I	GATNNNNATC	2 cut(s)	72, 98
BseBI	CCWGG	2 cut(s)	84, 245
BseCI	ATCGAT	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	269
BseJI	GATNNNNATC	2 cut(s)	72, 98
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	174
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	73, 93, 99, 171
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	140
BspDI	ATCGAT	1 cut(s)	193
BspPI	GGATC	2 cut(s)	81, 107
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	4 cut(s)	73, 93, 99, 171
BssNAI	GTATAC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	84, 245
BstACI	GRCGYC	1 cut(s)	126
BstKTI	GATC	4 cut(s)	76, 96, 102, 174
BstMBI	GATC	4 cut(s)	73, 93, 99, 171
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 137
BstNI	CCWGG	2 cut(s)	84, 245
BstSCI	CCNGG	2 cut(s)	82, 243
BstV1I	GCAGC	1 cut(s)	75
BstZ17I	GTATAC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	193
CseI	GACGC	2 cut(s)	134, 270
CviJI	RGCY	5 cut(s)	105, 140, 157, 167, 231
CviKI_1	RGCY	5 cut(s)	105, 140, 157, 167, 231
DpnI	GATC	4 cut(s)	75, 95, 101, 173
DpnII	GATC	4 cut(s)	73, 93, 99, 171
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	82, 243
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaiI	YATR	2 cut(s)	222, 264
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	64, 129
Fsp4HI	GCNGC	2 cut(s)	64, 129
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	64, 129
HaeIII	GGCC	1 cut(s)	140
HgaI	GACGC	2 cut(s)	134, 270
Hin1I	GRCGYC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	155
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	97, 175
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	109, 157, 196
HpyCH4IV	ACGT	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 137
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	73, 93, 99, 171
LpnPI	CCDG	6 cut(s)	69, 82, 96, 213, 230, 257
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	224
MalI	GATC	4 cut(s)	75, 95, 101, 173
MboI	GATC	4 cut(s)	73, 93, 99, 171
MboII	GAAGA	1 cut(s)	28
MnlI	CCTC	5 cut(s)	15, 40, 116, 130, 208
MseI	TTAA	2 cut(s)	111, 207
MspR9I	CCNGG	2 cut(s)	84, 245
MvaI	CCWGG	2 cut(s)	84, 245
MwoI	GCNNNNNNNGC	2 cut(s)	63, 137
NdeII	GATC	4 cut(s)	73, 93, 99, 171
PceI	AGGCCT	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	65, 130
Ple19I	CGATCG	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	82, 243
PspGI	CCWGG	2 cut(s)	82, 243
PvuI	CGATCG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	111, 207
SatI	GCNGC	2 cut(s)	64, 129
Sau3AI	GATC	4 cut(s)	73, 93, 99, 171
ScrFI	CCNGG	2 cut(s)	84, 245
SetI	ASST	4 cut(s)	159, 188, 227, 246
SfaNI	GCATC	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	82, 243
StyI	CCWWGG	1 cut(s)	269
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	170, 174, 193
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	111, 207
Tru9I	TTAA	2 cut(s)	111, 207
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	252
XmaJI	CCTAGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.