Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000291.1

Orthogroup ID

OG0004146

Physical Location & Seq

Genomic Coordinates Forward (+)

38345 .. 38810

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000291.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgcagatatcacctcgccaaggtcttttgagggtccgtgaatttacccttgcggagattgagcactttgttgaccctgaagacaaatctcacccaaaattctctgatgttgcacatttggagtttcttatgttccccagggatgaacagaagcctggccattctacaaggataatctcactaggtgaagccgtatcttctaaggattctaaaattgttgacaacgaaacccttggctactttattgggagagtatacctcttcctcacttgtctgagtatagacaagaaccatttaaggttccggcagcaccttgccaatgaaatggctcactatgctcaggactattgggatgctgagattgagacttcctacggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

126

Amino Acids

14.67

Weight (kDa)

5.58

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44740 AT3G44740 AT3G44740 AT3G44740 AT3G44740
fragaria_vesca	FvH4_4g22610
pyrus_communis	pycom13g12520
rosa_chinensis	RchiOBHm_Chr6g0269311 RchiOBHm_Chr6g0269321
rosa_laevigata	RLG00000013857 RLG00000015502 RLG00000016357 RLG00000020769 RLG00000027693 RLG00000034245
rosa_multiflora	Rmu_co8414589.1_g000001 Rmu_sc0003673.1_g000011 Rmu_ssc0000291.1_g000006 Rmu_ssc0000291.1_g000008
rosa_roxburghii	Rroxscaffold_2G00113850 Rroxscaffold_7G00198810 Rroxscaffold_7G00198830
rosa_rugosa	Rorug03G0065500
rosa_samantha	Rh3CG264600 Rh3DG260500 Rh4AG284800 Rh4BG290800 Rh4CG306800 Rh6AG167500 Rh6AG167600 Rh6BG172700 Rh6CG166700 Rh6DG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	41, 98
AcuI	CTGAAG	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	20
AjnI	CCWGG	2 cut(s)	137, 154
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	359
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	41, 98
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	3, 83, 197
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	139, 156
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	2 cut(s)	139, 156
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	35, 302
BmrFI	CCNGG	2 cut(s)	139, 156
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
Bpu10I	CCTNAGC	1 cut(s)	339
BsaJI	CCNNGG	4 cut(s)	19, 137, 138, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	139, 156
BseDI	CCNNGG	4 cut(s)	19, 137, 138, 232
BseGI	GGATG	2 cut(s)	148, 358
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	3 cut(s)	266, 348, 353
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	3 cut(s)	267, 349, 352
BspLI	GGNNCC	2 cut(s)	35, 302
BssECI	CCNNGG	4 cut(s)	19, 137, 138, 232
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	19, 232
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	139, 156
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	4 cut(s)	201, 275, 339, 357
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	148, 358
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	2 cut(s)	139, 156
BstSCI	CCNGG	2 cut(s)	137, 154
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	148, 358
Cfr13I	GGNCC	1 cut(s)	34
CviJI	RGCY	5 cut(s)	154, 159, 191, 237, 329
CviKI_1	RGCY	5 cut(s)	154, 159, 191, 237, 329
DdeI	CTNAG	4 cut(s)	201, 275, 339, 357
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	19, 232
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	99
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	137, 154
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	2 cut(s)	19, 232
ErhI	CCWWGG	2 cut(s)	19, 232
FaiI	YATR	4 cut(s)	131, 256, 281, 336
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	2 cut(s)	155, 365
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	304
HincII	GTYRAC	2 cut(s)	73, 220
HindII	GTYRAC	2 cut(s)	73, 220
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	3 cut(s)	3, 83, 197
Hpy166II	GTNNAC	3 cut(s)	73, 220, 256
Hpy188I	TCNGA	2 cut(s)	106, 276
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	3 cut(s)	73, 220, 256
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	4, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	4 cut(s)	201, 275, 339, 357
LpnPI	CCDG	7 cut(s)	90, 124, 141, 151, 168, 317, 326
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	182
MboII	GAAGA	3 cut(s)	92, 189, 253
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	3 cut(s)	41, 98, 213
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	4 cut(s)	24, 24, 269, 275
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	139, 156
MvaI	CCWGG	2 cut(s)	139, 156
MwoI	GCNNNNNNNGC	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	35, 302
PasI	CCCWGGG	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	137, 154
PspGI	CCWGG	2 cut(s)	137, 154
PspN4I	GGNNCC	2 cut(s)	35, 302
PspPI	GGNCC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	308
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	139, 156
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	6 cut(s)	16, 25, 187, 261, 302, 315
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	3 cut(s)	41, 98, 213
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	137, 154
StyI	CCWWGG	2 cut(s)	19, 232
TaaI	ACNGT	1 cut(s)	377
TasI	AATT	3 cut(s)	41, 98, 213
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	159, 336
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	18
XapI	RAATTY	2 cut(s)	41, 98
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.