Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000578

Physical Location & Seq

Genomic Coordinates Reverse (-)

16913384 .. 16914131

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCACCAAAGGCAGAGAAGAAGCCGGCAGAGAAGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCCGGTGCCGGCGGCGATAAGAAGAAGAAGATGAAGAAGAAGAGTGTTGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAATTGGCATCGGAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAGCTTGCGAAACATGCTGTTTCTGAAGGAACTAAGGCGGTGACTAAGTTTACTAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005911 GO:0009506 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0030054 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

145

Amino Acids

15.91

Weight (kDa)

10.02

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	45 - 121	9.7e-21	Core histone H2A/H2B/H3/H4 domain
Histone_ABTB	PF26281	75 - 144	6.6e-07	Histone domain in ABTB family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45980 AT3G46030 AT5G59910
fragaria_vesca	FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica	MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica	Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis	pycom03g08040 pycom11g09350
rosa_chinensis	RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata	RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora	Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii	Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa	Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha	Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana	Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 122
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccII	CGCG	1 cut(s)	305
AciI	CCGC	2 cut(s)	129, 413
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	95, 218
AgsI	TTSAA	2 cut(s)	190, 228
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	71, 236, 301, 379, 432
AluI	AGCT	5 cut(s)	71, 236, 301, 379, 432
Alw26I	GTCTC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	386, 427
AvaI	CYCGRG	1 cut(s)	336
BanI	GGYRCC	2 cut(s)	4, 122
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	6, 124
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 218
Bse118I	RCCGGY	4 cut(s)	25, 95, 119, 125
Bse1I	ACTGG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	95, 218
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	305
BshNI	GGYRCC	2 cut(s)	4, 122
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	26, 96, 120, 126
BslI	CCNNNNNNNGG	2 cut(s)	95, 218
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	305
BspACI	CCGC	2 cut(s)	129, 413
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	6, 124
BspMAI	CTGCAG	1 cut(s)	79
BspT107I	GGYRCC	2 cut(s)	4, 122
BsrFI	RCCGGY	4 cut(s)	25, 95, 119, 125
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	4 cut(s)	25, 95, 119, 125
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	5 cut(s)	27, 97, 127, 303, 381
BstDEI	CTNAG	2 cut(s)	408, 420
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	305
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 68, 389
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	208
BtuMI	TCGCGA	1 cut(s)	305
Cac8I	GCNNGC	5 cut(s)	27, 97, 127, 303, 381
Cfr10I	RCCGGY	4 cut(s)	25, 95, 119, 125
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	389
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	408, 420
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	1 cut(s)	392
FaiI	YATR	4 cut(s)	239, 248, 312, 390
FatI	CATG	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	1 cut(s)	130
HapII	CCGG	4 cut(s)	26, 96, 120, 126
Hin1II	CATG	1 cut(s)	392
HinfI	GANTC	2 cut(s)	290, 343
HpaII	CCGG	4 cut(s)	26, 96, 120, 126
HphI	GGTGA	2 cut(s)	386, 427
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	4 cut(s)	198, 289, 348, 400
Hpy188III	TCNNGA	5 cut(s)	109, 212, 304, 338, 435
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	2 cut(s)	298, 328
HpyAV	CCTTC	2 cut(s)	106, 395
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 68, 389
HpyF3I	CTNAG	2 cut(s)	408, 420
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	392
KroI	GCCGGC	3 cut(s)	25, 95, 125
KroNI	GCCGGC	3 cut(s)	27, 97, 127
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	9 cut(s)	39, 54, 87, 109, 133, 139, 225, 357, 384
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	1 cut(s)	278
MnlI	CCTC	2 cut(s)	40, 300
MroNI	GCCGGC	3 cut(s)	25, 95, 125
MroXI	GAANNNNTTC	1 cut(s)	254
MspI	CCGG	4 cut(s)	26, 96, 120, 126
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	11, 68, 389
NaeI	GCCGGC	3 cut(s)	27, 97, 127
NdeII	GATC	1 cut(s)	177
NgoMIV	GCCGGC	3 cut(s)	25, 95, 125
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	6, 124
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	415
NruI	TCGCGA	1 cut(s)	305
NspI	RCATGY	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	2 cut(s)	293, 302
PdiI	GCCGGC	3 cut(s)	27, 97, 127
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	290, 343
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	6, 124
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	177
RruI	TCGCGA	1 cut(s)	305
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	8 cut(s)	73, 173, 195, 238, 303, 311, 381, 434
SfaNI	GCATC	1 cut(s)	293
SfcI	CTRYAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	129, 413
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	278
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	290, 343
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	164, 197, 247, 263
Van91I	CCANNNNNTGG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.