FvH4_3g35390

Histone H2B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000578
Physical Location & Seq
Forward (+)
30470859 .. 30471498
640 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35390.t1

Sequence Viewer

Length: 381 bp
ATGGCGCCCAAAGCTGAGAAGAAGCCCGCCGAGAAAAAGCCGGCCGAGAAGACCGTGGCGGAGAAGAAGCCCAAGGCCGGAAAGAAGCTCCCCAAGGAGGCCGGAGCGGCCGCCGGCGACAAGAAGAAGAAGAGGAACAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTCCACCCTGACATTGGGATCTCCAGCAAGGCCATGGGTATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCGCAGGAGTCGTCTAGGCTCGCCAGGTACAACAAGAAGCCGACGATTACTTCTCGGGAGATCCAGACCGCTGTGAGGCTTGTGCTTCCTGAATTTTTCATTAGATCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

127

Amino Acids

14.16

Weight (kDa)

10.18

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 40 - 116 1.5e-20 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 5 cut(s) 27, 59, 107, 111, 336
AclWI GGATC 2 cut(s) 215, 322
AcoI YGGCCR 2 cut(s) 42, 108
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 5 cut(s) 77, 97, 187, 203, 342
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 4 cut(s) 14, 88, 240, 265
AluI AGCT 4 cut(s) 14, 88, 240, 265
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 2 cut(s) 215, 322
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 5 cut(s) 42, 75, 99, 108, 219
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 2 cut(s) 7, 271
AspS9I GGNCC 2 cut(s) 178, 190
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 2 cut(s) 178, 190
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 178
BglI GCCNNNNNGGC 1 cut(s) 107
BglII AGATCT 2 cut(s) 162, 371
BisI GCNGC 2 cut(s) 108, 111
BlsI GCNGC 2 cut(s) 109, 112
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 2 cut(s) 178, 190
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 178, 190
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 4 cut(s) 54, 72, 93, 222
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 97, 187, 203, 342
Bse118I RCCGGY 2 cut(s) 40, 113
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 4 cut(s) 54, 72, 93, 222
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 5 cut(s) 77, 97, 187, 203, 342
BseMII CTCAG 1 cut(s) 6
BseX3I CGGCCG 2 cut(s) 42, 108
Bsh1285I CGRYCG 2 cut(s) 45, 111
BshFI GGCC 5 cut(s) 44, 77, 101, 110, 221
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 2 cut(s) 45, 111
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 4 cut(s) 41, 78, 102, 114
BslI CCNNNNNNNGG 5 cut(s) 77, 97, 187, 203, 342
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 5 cut(s) 44, 77, 101, 110, 221
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 321
Bsp143I GATC 4 cut(s) 162, 207, 327, 371
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 5 cut(s) 27, 59, 107, 111, 336
BspANI GGCC 5 cut(s) 44, 77, 101, 110, 221
BspCNI CTCAG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 2 cut(s) 215, 322
BspQI GCTCTTC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 40, 113
BssAI RCCGGY 2 cut(s) 40, 113
BssECI CCNNGG 4 cut(s) 54, 72, 93, 222
BssMI GATC 4 cut(s) 162, 207, 327, 371
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 72, 93, 222
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 125, 137
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 5 cut(s) 27, 42, 115, 267, 288
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 2 cut(s) 54, 222
BstENI CCTNNNNNAGG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 271
BstKTI GATC 4 cut(s) 165, 210, 330, 374
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 162, 207, 327, 371
BstMCI CGRYCG 2 cut(s) 45, 111
BstMWI GCNNNNNNNGC 2 cut(s) 11, 107
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 4 cut(s) 162, 207, 327, 371
BstYI RGATCY 4 cut(s) 162, 207, 327, 371
BstZI CGGCCG 2 cut(s) 42, 108
BsuRI GGCC 5 cut(s) 44, 77, 101, 110, 221
BtgI CCRYGG 2 cut(s) 54, 222
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 5 cut(s) 27, 42, 115, 267, 288
CciI TCATGA 1 cut(s) 231
CciNI GCGGCCGC 1 cut(s) 108
CfoI GCGC 2 cut(s) 7, 271
Cfr10I RCCGGY 2 cut(s) 40, 113
Cfr13I GGNCC 2 cut(s) 178, 190
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 223, 232
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 15
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 164, 209, 329, 373
DpnII GATC 4 cut(s) 162, 207, 327, 371
EaeI YGGCCR 2 cut(s) 42, 108
EagI CGGCCG 2 cut(s) 42, 108
Eam1104I CTCTTC 2 cut(s) 125, 137
EarI CTCTTC 2 cut(s) 125, 137
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 2 cut(s) 42, 108
Eco130I CCWWGG 3 cut(s) 72, 93, 222
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 2 cut(s) 178, 190
Eco52I CGGCCG 2 cut(s) 42, 108
Eco88I CYCGRG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 290
EcoT14I CCWWGG 3 cut(s) 72, 93, 222
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 72, 93, 222
FaeI CATG 2 cut(s) 226, 235
FaiI YATR 2 cut(s) 224, 233
FatI CATG 2 cut(s) 222, 231
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 108, 111
Fsp4HI GCNGC 2 cut(s) 108, 111
FspBI CTAG 1 cut(s) 282
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 2 cut(s) 6, 270
GluI GCNGC 2 cut(s) 108, 111
GsuI CTGGAG 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 44, 77, 101, 110, 221
HapII CCGG 4 cut(s) 41, 78, 102, 114
HhaI GCGC 2 cut(s) 7, 271
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 226, 235
Hin6I GCGC 2 cut(s) 5, 269
HinP1I GCGC 2 cut(s) 5, 269
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 275
HpaII CCGG 4 cut(s) 41, 78, 102, 114
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 5 cut(s) 232, 259, 323, 331, 356
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 107
HpyF3I CTNAG 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 226, 235
HspAI GCGC 2 cut(s) 5, 269
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 2 cut(s) 40, 113
KroNI GCCGGC 2 cut(s) 42, 115
Kzo9I GATC 4 cut(s) 162, 207, 327, 371
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 2 cut(s) 93, 104
MaeI CTAG 1 cut(s) 282
MalI GATC 4 cut(s) 164, 209, 329, 373
MbiI CCGCTC 1 cut(s) 107
MboI GATC 4 cut(s) 162, 207, 327, 371
MboII GAAGA 9 cut(s) 31, 61, 76, 136, 139, 142, 154, 163, 247
MflI RGATCY 4 cut(s) 162, 207, 327, 371
MluCI AATT 1 cut(s) 359
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 4 cut(s) 91, 126, 191, 336
MreI CGCCGGCG 1 cut(s) 113
MroNI GCCGGC 2 cut(s) 40, 113
MroXI GAANNNNTTC 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 4 cut(s) 41, 78, 102, 114
MspR9I CCNGG 1 cut(s) 292
MvaI CCWGG 1 cut(s) 292
MwoI GCNNNNNNNGC 2 cut(s) 11, 107
NaeI GCCGGC 2 cut(s) 42, 115
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 222
NdeII GATC 4 cut(s) 162, 207, 327, 371
NgoMIV GCCGGC 2 cut(s) 40, 113
NlaIII CATG 2 cut(s) 226, 235
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 55, 70
NotI GCGGCCGC 1 cut(s) 108
NsbI TGCGCA 1 cut(s) 270
PagI TCATGA 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdiI GCCGGC 2 cut(s) 42, 115
PdmI GAANNNNTTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 109, 112
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 178, 190
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 4 cut(s) 162, 207, 327, 371
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 137
SatI GCNGC 2 cut(s) 108, 111
Sau3AI GATC 4 cut(s) 162, 207, 327, 371
Sau96I GGNCC 2 cut(s) 178, 190
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 292
SetI ASST 8 cut(s) 16, 90, 158, 180, 192, 242, 267, 296
SfiI GGCCNNNNNGGCC 1 cut(s) 107
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 2 cut(s) 178, 190
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 359
SsiI CCGC 5 cut(s) 27, 59, 107, 111, 336
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 3 cut(s) 72, 93, 222
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 359
TauI GCSGC 2 cut(s) 110, 113
TspDTI ATGAA 3 cut(s) 232, 248, 355
VpaK11BI GGWCC 2 cut(s) 178, 190
XagI CCTNNNNNAGG 1 cut(s) 185
XapI RAATTY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 2 cut(s) 200, 220
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.