FvH4_3g40690

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000578
Physical Location & Seq
Reverse (-)
34270718 .. 34271155
438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40690.t1

Sequence Viewer

Length: 438 bp
ATGGCGCCCAAAGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCCGAGAAGACCGTCGCCGAGAAGGCCCCGGCGGAGAAGAAGCCCAAGGCCGGGAAGAAGCTCCCCAAGGAGGCCGGAGCCGCCGCCGGAGACAAGAAGAAGAAGAGGAACAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTCCACCCTGACATCGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCGTCGAGGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCGAGGGAGATCCAGACGGCGGTGAGGCTTGTGCTTCCTGGTGAGCTGGCCAAGCACGCTGTGTCGGAGGGGACCAAGGCGGTGACCAAGTTTACGAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

146

Amino Acids

15.9

Weight (kDa)

10.11

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 45 - 121 2.3e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 75 - 144 4.4e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 29
AciI CCGC 7 cut(s) 27, 29, 74, 123, 126, 353, 413
AclWI GGATC 3 cut(s) 230, 251, 337
AcoI YGGCCR 2 cut(s) 42, 381
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 6 cut(s) 92, 93, 112, 202, 218, 352
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 5 cut(s) 103, 255, 280, 379, 432
AluI AGCT 5 cut(s) 103, 255, 280, 379, 432
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 2 cut(s) 126, 161
AlwI GGATC 3 cut(s) 230, 251, 337
AoxI GGCC 6 cut(s) 42, 66, 90, 114, 234, 381
ArsI GACNNNNNNTTYG 2 cut(s) 316, 348
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 67, 193, 205, 405
AsuC2I CCSGG 2 cut(s) 71, 94
AsuHPI GGTGA 3 cut(s) 367, 386, 427
AvaII GGWCC 3 cut(s) 193, 205, 405
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 2 cut(s) 71, 94
BcoDI GTCTC 2 cut(s) 126, 161
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 177
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 3 cut(s) 71, 94, 372
Bme18I GGWCC 3 cut(s) 193, 205, 405
BmgT120I GGNCC 4 cut(s) 67, 193, 205, 405
BmiI GGNNCC 4 cut(s) 6, 69, 121, 406
BmrFI CCNGG 3 cut(s) 71, 94, 372
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 2 cut(s) 71, 94
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 6 cut(s) 27, 69, 87, 108, 237, 408
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 93, 112, 202, 218, 352
Bse118I RCCGGY 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 6 cut(s) 27, 69, 87, 108, 237, 408
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 6 cut(s) 92, 93, 112, 202, 218, 352
BseMII CTCAG 1 cut(s) 299
BseX3I CGGCCG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 6 cut(s) 44, 68, 92, 116, 236, 383
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 434
BsiSI CCGG 5 cut(s) 41, 71, 93, 117, 129
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 6 cut(s) 92, 93, 112, 202, 218, 352
BsmAI GTCTC 2 cut(s) 126, 161
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 6 cut(s) 44, 68, 92, 116, 236, 383
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 4 cut(s) 177, 222, 243, 342
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 7 cut(s) 27, 29, 74, 123, 126, 353, 413
BspANI GGCC 6 cut(s) 44, 68, 92, 116, 236, 383
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 4 cut(s) 6, 69, 121, 406
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 3 cut(s) 230, 251, 337
BspQI GCTCTTC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 6 cut(s) 27, 69, 87, 108, 237, 408
BssMI GATC 4 cut(s) 177, 222, 243, 342
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 87, 108, 237, 408
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 140, 152
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 6 cut(s) 27, 42, 282, 303, 381, 390
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 2 cut(s) 27, 237
BstEII GGTNACC 1 cut(s) 415
BstENI CCTNNNNNAGG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 180, 225, 246, 345
BstMAI GTCTC 2 cut(s) 126, 161
BstMBI GATC 4 cut(s) 177, 222, 243, 342
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 5 cut(s) 11, 65, 122, 385, 389
BstNI CCWGG 1 cut(s) 372
BstPI GGTNACC 1 cut(s) 415
BstSCI CCNGG 3 cut(s) 69, 92, 370
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 3 cut(s) 177, 222, 342
BstYI RGATCY 3 cut(s) 177, 222, 342
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 6 cut(s) 44, 68, 92, 116, 236, 383
BtgI CCRYGG 2 cut(s) 27, 237
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 6 cut(s) 27, 42, 282, 303, 381, 390
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 4 cut(s) 67, 193, 205, 405
Cfr42I CCGCGG 1 cut(s) 30
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 238, 247
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 285
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 179, 224, 245, 344
DpnII GATC 4 cut(s) 177, 222, 243, 342
DraIII CACNNNGTG 1 cut(s) 394
EaeI YGGCCR 2 cut(s) 42, 381
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 140, 152
EarI CTCTTC 2 cut(s) 140, 152
EciI GGCGGA 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 432
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 4 cut(s) 87, 108, 237, 408
Eco24I GRGCYC 1 cut(s) 434
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 3 cut(s) 193, 205, 405
Eco52I CGGCCG 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 432
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 2 cut(s) 67, 193
EcoO65I GGTNACC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 4 cut(s) 87, 108, 237, 408
EcoT38I GRGCYC 1 cut(s) 434
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 4 cut(s) 87, 108, 237, 408
FaeI CATG 2 cut(s) 241, 250
FaiI YATR 2 cut(s) 239, 248
FaqI GGGAC 1 cut(s) 418
FatI CATG 2 cut(s) 237, 246
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 123, 126
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 123, 126
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 123, 126
GsuI CTGGAG 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 6 cut(s) 44, 68, 92, 116, 236, 383
HapII CCGG 5 cut(s) 41, 71, 93, 117, 129
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 241, 250
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 290
HpaII CCGG 5 cut(s) 41, 71, 93, 117, 129
HphI GGTGA 3 cut(s) 367, 386, 427
Hpy166II GTNNAC 2 cut(s) 208, 426
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 6 cut(s) 220, 247, 274, 287, 346, 435
Hpy8I GTNNAC 2 cut(s) 208, 426
Hpy99I CGWCG 3 cut(s) 59, 298, 328
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 65, 122, 385, 389
HpyF3I CTNAG 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 241, 250
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
KspI CCGCGG 1 cut(s) 30
Kzo9I GATC 4 cut(s) 177, 222, 243, 342
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 2 cut(s) 108, 119
MaeIII GTNAC 1 cut(s) 415
MalI GATC 4 cut(s) 179, 224, 245, 344
MboI GATC 4 cut(s) 177, 222, 243, 342
MflI RGATCY 3 cut(s) 177, 222, 342
MhlI GDGCHC 1 cut(s) 434
MlsI TGGCCA 1 cut(s) 383
MluNI TGGCCA 1 cut(s) 383
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 8 cut(s) 106, 141, 206, 291, 300, 330, 351, 394
Mox20I TGGCCA 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 5 cut(s) 41, 71, 93, 117, 129
MspR9I CCNGG 3 cut(s) 71, 94, 372
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 5 cut(s) 11, 65, 122, 385, 389
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 71, 94
NcoI CCATGG 1 cut(s) 237
NdeII GATC 4 cut(s) 177, 222, 243, 342
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 241, 250
NlaIV GGNNCC 4 cut(s) 6, 69, 121, 406
NmeAIII GCCGAG 3 cut(s) 40, 70, 85
NmuCI GTSAC 1 cut(s) 415
PagI TCATGA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 302, 332
PdiI GCCGGC 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 298
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 370
PspEI GGTNACC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 4 cut(s) 6, 69, 121, 406
PspPI GGNCC 4 cut(s) 67, 193, 205, 405
PspPPI RGGWCCY 1 cut(s) 193
PsuI RGATCY 3 cut(s) 177, 222, 342
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SacI GAGCTC 1 cut(s) 434
SacII CCGCGG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 4 cut(s) 177, 222, 243, 342
Sau96I GGNCC 4 cut(s) 67, 193, 205, 405
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 71, 94, 372
SduI GDGCHC 1 cut(s) 434
SetI ASST 9 cut(s) 105, 173, 195, 207, 257, 282, 311, 381, 434
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 30
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 3 cut(s) 193, 205, 405
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 7 cut(s) 27, 29, 74, 123, 126, 353, 413
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 69, 92, 370
StyI CCWWGG 4 cut(s) 87, 108, 237, 408
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 3 cut(s) 273, 296, 335
TauI GCSGC 2 cut(s) 125, 128
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 247, 263
VpaK11BI GGWCC 3 cut(s) 193, 205, 405
XagI CCTNNNNNAGG 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.