Rh5DG445900

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000578
Physical Location & Seq
Forward (+)
71228118 .. 71228876
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG445900.1

Sequence Viewer

Length: 441 bp
ATGGCGCCAAAGGCCGAAAAGAAGCCCGCCGAGAAGAAGCCGGCCGAGAAGGCTCCCGCCGCAGAGAAGGCCCCCGCGGAGAAGAAGCCCAAGGCCGGGAAGAAGCTCCCTAAGGAGGCCGGAGCCGCTGCCGGAGACAAGAAGAAGAAGAGAAACAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTCCACCCTGACATCGGAATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTTATCAACGACATCTTTGAGAAGCTTGCTCAGGAGTCGTCTAGGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTGAGGCTTGTCCTTCCTGGTGAATTGGCCAAGCACGCCGTCTCTGAGGGGACTAAGGCGGTGACCAAGTTCACTAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

146

Amino Acids

15.94

Weight (kDa)

10.11

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 46 - 122 2.3e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 76 - 145 4.4e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 77
AciI CCGC 7 cut(s) 27, 57, 60, 75, 77, 126, 416
AcoI YGGCCR 2 cut(s) 42, 384
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 5 cut(s) 95, 96, 115, 205, 221
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 4 cut(s) 106, 258, 283, 435
AluI AGCT 4 cut(s) 106, 258, 283, 435
Alw26I GTCTC 3 cut(s) 129, 164, 403
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 7 cut(s) 12, 42, 69, 93, 117, 237, 384
ApeKI GCWGC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 70, 196, 208
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 389, 430
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 2 cut(s) 196, 208
AxyI CCTNAGG 1 cut(s) 111
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 129, 164, 403
BfaI CTAG 2 cut(s) 300, 432
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 1 cut(s) 180
BisI GCNGC 3 cut(s) 60, 126, 129
BlsI GCNGC 3 cut(s) 61, 127, 130
Bme1390I CCNGG 2 cut(s) 97, 375
Bme18I GGWCC 2 cut(s) 196, 208
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 3 cut(s) 70, 196, 208
BmiI GGNNCC 4 cut(s) 6, 54, 72, 124
BmrFI CCNGG 2 cut(s) 97, 375
BmsI GCATC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 75, 90, 240
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 96, 115, 205, 221
Bse118I RCCGGY 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 185
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 3 cut(s) 75, 90, 240
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 5 cut(s) 95, 96, 115, 205, 221
BseMII CTCAG 2 cut(s) 302, 393
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 7 cut(s) 14, 44, 71, 95, 119, 239, 386
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 4 cut(s) 41, 96, 120, 132
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 5 cut(s) 95, 96, 115, 205, 221
BsmAI GTCTC 3 cut(s) 129, 164, 403
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 7 cut(s) 14, 44, 71, 95, 119, 239, 386
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 339
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 7 cut(s) 27, 57, 60, 75, 77, 126, 416
BspANI GGCC 7 cut(s) 14, 44, 71, 95, 119, 239, 386
BspCNI CTCAG 2 cut(s) 301, 394
BspFNI CGCG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 4 cut(s) 6, 54, 72, 124
BspMI ACCTGC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 3 cut(s) 75, 90, 240
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 90, 240
Bst2UI CCWGG 1 cut(s) 375
Bst6I CTCTTC 2 cut(s) 143, 155
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 5 cut(s) 27, 42, 285, 306, 393
BstDEI CTNAG 4 cut(s) 111, 288, 402, 411
BstDSI CCRYGG 2 cut(s) 75, 240
BstEII GGTNACC 1 cut(s) 418
BstENI CCTNNNNNAGG 1 cut(s) 203
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 3 cut(s) 129, 164, 403
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 68, 125, 392
BstNI CCWGG 1 cut(s) 375
BstPI GGTNACC 1 cut(s) 418
BstSCI CCNGG 2 cut(s) 95, 373
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BstZI CGGCCG 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 7 cut(s) 14, 44, 71, 95, 119, 239, 386
BtgI CCRYGG 2 cut(s) 75, 240
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 5 cut(s) 27, 42, 285, 306, 393
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 70, 196, 208
Cfr42I CCGCGG 1 cut(s) 78
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 241, 250
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 4 cut(s) 111, 288, 402, 411
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 2 cut(s) 42, 384
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 143, 155
EarI CTCTTC 2 cut(s) 143, 155
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 90, 240
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 196, 208
Eco52I CGGCCG 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 418
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 2 cut(s) 70, 196
EcoO65I GGTNACC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 90, 240
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 90, 240
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 2 cut(s) 244, 253
FaiI YATR 2 cut(s) 242, 251
FaqI GGGAC 1 cut(s) 421
FatI CATG 2 cut(s) 240, 249
FauI CCCGC 3 cut(s) 34, 64, 82
Fnu4HI GCNGC 3 cut(s) 60, 126, 129
Fsp4HI GCNGC 3 cut(s) 60, 126, 129
FspBI CTAG 2 cut(s) 300, 432
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 60, 126, 129
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 7 cut(s) 14, 44, 71, 95, 119, 239, 386
HapII CCGG 4 cut(s) 41, 96, 120, 132
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 244, 253
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 225, 293, 346
HpaII CCGG 4 cut(s) 41, 96, 120, 132
HphI GGTGA 2 cut(s) 389, 430
Hpy166II GTNNAC 2 cut(s) 211, 429
Hpy188I TCNGA 3 cut(s) 224, 351, 403
Hpy188III TCNNGA 4 cut(s) 250, 290, 341, 438
Hpy8I GTNNAC 2 cut(s) 211, 429
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 3 cut(s) 43, 61, 380
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 68, 125, 392
HpyF3I CTNAG 4 cut(s) 111, 288, 402, 411
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 244, 253
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 1 cut(s) 180
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 3 cut(s) 58, 111, 122
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 300, 432
MaeIII GTNAC 1 cut(s) 418
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 8 cut(s) 46, 94, 112, 154, 157, 160, 172, 181
MflI RGATCY 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 1 cut(s) 380
MluNI TGGCCA 1 cut(s) 386
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 5 cut(s) 109, 209, 303, 354, 397
Mox20I TGGCCA 1 cut(s) 386
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 2 cut(s) 77, 128
MspI CCGG 4 cut(s) 41, 96, 120, 132
MspR9I CCNGG 2 cut(s) 97, 375
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 68, 125, 392
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 240
NdeII GATC 1 cut(s) 180
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 244, 253
NlaIV GGNNCC 4 cut(s) 6, 54, 72, 124
NmeAIII GCCGAG 2 cut(s) 55, 70
NmuCI GTSAC 1 cut(s) 418
PagI TCATGA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 225, 346
PkrI GCNGC 3 cut(s) 61, 127, 130
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 301
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 373
PspEI GGTNACC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 4 cut(s) 6, 54, 72, 124
PspPI GGNCC 3 cut(s) 70, 196, 208
PspPPI RGGWCCY 1 cut(s) 196
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacII CCGCGG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 155
SatI GCNGC 3 cut(s) 60, 126, 129
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 3 cut(s) 70, 196, 208
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 97, 375
SetI ASST 8 cut(s) 108, 176, 198, 210, 260, 285, 314, 437
SfaNI GCATC 1 cut(s) 255
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 78
SgrBI CCGCGG 1 cut(s) 78
SinI GGWCC 2 cut(s) 196, 208
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 380
SsiI CCGC 7 cut(s) 27, 57, 60, 75, 77, 126, 416
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 300, 432
StyD4I CCNGG 2 cut(s) 95, 373
StyI CCWWGG 2 cut(s) 90, 240
TasI AATT 1 cut(s) 380
TauI GCSGC 2 cut(s) 62, 128
TfiI GAWTC 2 cut(s) 225, 346
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 196, 208
XagI CCTNNNNNAGG 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XspI CTAG 2 cut(s) 300, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.