FvH4_3g35380

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000578
Physical Location & Seq
Forward (+)
30465564 .. 30466764
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35380.t1

Sequence Viewer

Length: 438 bp
ATGGCGCCCAAGGCTGAGAAGAAGCCCGCCGAGAAGAAGCCGGCCGAGAAGACCGTGGCGGAGAAAGCGCCGGCGGAGAAGAAGCCCAAGGCCGGCAAGAAGCTCCCCAAGGAAGCCGGAGCGGCCGCCGGAGAGAAGAAGAAGAAGAGAAACAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTTCACCCTGACATTGGGATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTTTGAGAAGCTTGCTCAGGAGTCGTCCAGGCTCGCAAGGTACAACAAGAAGCCCACGATTACTTCTCGGGAGATCCAGACTGCTGTGAGGCTTGTGCTTCCTGGTGAATTGGCCAAGCACGCCGTCTCTGAGGGGACTAAGGCTGTGACCAAGTTTACTAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

146

Amino Acids

15.92

Weight (kDa)

10.11

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 43 - 121 8.8e-21 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 75 - 144 4.4e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 5 cut(s) 27, 59, 74, 122, 126
AclWI GGATC 2 cut(s) 230, 337
AcoI YGGCCR 3 cut(s) 42, 123, 381
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 3 cut(s) 92, 202, 218
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 2 cut(s) 296, 370
AluBI AGCT 4 cut(s) 103, 255, 280, 432
AluI AGCT 4 cut(s) 103, 255, 280, 432
Alw26I GTCTC 2 cut(s) 161, 400
AlwI GGATC 2 cut(s) 230, 337
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 5 cut(s) 42, 90, 123, 234, 381
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 2 cut(s) 7, 70
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 200, 386
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 383
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 298, 372
BcoDI GTCTC 2 cut(s) 161, 400
BfaI CTAG 1 cut(s) 429
BfoI RGCGCY 2 cut(s) 8, 71
BfuAI ACCTGC 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 177
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 2 cut(s) 298, 372
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 298, 372
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 5 cut(s) 9, 54, 87, 108, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 202, 218
Bse118I RCCGGY 3 cut(s) 40, 70, 92
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 2 cut(s) 298, 372
BseDI CCNNGG 5 cut(s) 9, 54, 87, 108, 237
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 92, 202, 218
BseMII CTCAG 3 cut(s) 6, 299, 390
BseX3I CGGCCG 2 cut(s) 42, 123
Bsh1285I CGRYCG 2 cut(s) 45, 126
BshFI GGCC 5 cut(s) 44, 92, 125, 236, 383
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 2 cut(s) 45, 126
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 5 cut(s) 41, 71, 93, 117, 129
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 3 cut(s) 92, 202, 218
BsmAI GTCTC 2 cut(s) 161, 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 5 cut(s) 44, 92, 125, 236, 383
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 336
Bsp143I GATC 3 cut(s) 177, 222, 342
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 5 cut(s) 27, 59, 74, 122, 126
BspANI GGCC 5 cut(s) 44, 92, 125, 236, 383
BspCNI CTCAG 3 cut(s) 7, 298, 391
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 230, 337
BspQI GCTCTTC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 122
BsrFI RCCGGY 3 cut(s) 40, 70, 92
BssAI RCCGGY 3 cut(s) 40, 70, 92
BssECI CCNNGG 5 cut(s) 9, 54, 87, 108, 237
BssMI GATC 3 cut(s) 177, 222, 342
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 9, 87, 108, 237
Bst2UI CCWGG 2 cut(s) 298, 372
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 140, 152
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 7 cut(s) 27, 42, 72, 94, 282, 303, 390
BstDEI CTNAG 4 cut(s) 15, 285, 399, 408
BstDSI CCRYGG 2 cut(s) 54, 237
BstENI CCTNNNNNAGG 1 cut(s) 200
BstH2I RGCGCY 2 cut(s) 8, 71
BstHHI GCGC 2 cut(s) 7, 70
BstKTI GATC 3 cut(s) 180, 225, 345
BstMAI GTCTC 2 cut(s) 161, 400
BstMBI GATC 3 cut(s) 177, 222, 342
BstMCI CGRYCG 2 cut(s) 45, 126
BstMWI GCNNNNNNNGC 4 cut(s) 11, 65, 122, 389
BstNI CCWGG 2 cut(s) 298, 372
BstSCI CCNGG 2 cut(s) 296, 370
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 3 cut(s) 177, 222, 342
BstYI RGATCY 3 cut(s) 177, 222, 342
BstZI CGGCCG 2 cut(s) 42, 123
BsuRI GGCC 5 cut(s) 44, 92, 125, 236, 383
BtgI CCRYGG 2 cut(s) 54, 237
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 7 cut(s) 27, 42, 72, 94, 282, 303, 390
CciI TCATGA 1 cut(s) 246
CciNI GCGGCCGC 1 cut(s) 123
CfoI GCGC 2 cut(s) 7, 70
Cfr10I RCCGGY 3 cut(s) 40, 70, 92
Cfr13I GGNCC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 238, 247
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 4 cut(s) 15, 285, 399, 408
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 179, 224, 344
DpnII GATC 3 cut(s) 177, 222, 342
EaeI YGGCCR 3 cut(s) 42, 123, 381
EagI CGGCCG 2 cut(s) 42, 123
Eam1104I CTCTTC 2 cut(s) 140, 152
EarI CTCTTC 2 cut(s) 140, 152
EciI GGCGGA 2 cut(s) 74, 89
EclXI CGGCCG 2 cut(s) 42, 123
Eco130I CCWWGG 4 cut(s) 9, 87, 108, 237
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 193
Eco52I CGGCCG 2 cut(s) 42, 123
Eco88I CYCGRG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 296, 370
EcoT14I CCWWGG 4 cut(s) 9, 87, 108, 237
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 4 cut(s) 9, 87, 108, 237
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 2 cut(s) 241, 250
FaiI YATR 2 cut(s) 239, 248
FaqI GGGAC 1 cut(s) 418
FatI CATG 2 cut(s) 237, 246
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 123, 126
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 1 cut(s) 429
GlaI GCGC 2 cut(s) 6, 69
GluI GCNGC 2 cut(s) 123, 126
GsuI CTGGAG 1 cut(s) 211
HaeII RGCGCY 2 cut(s) 8, 71
HaeIII GGCC 5 cut(s) 44, 92, 125, 236, 383
HapII CCGG 5 cut(s) 41, 71, 93, 117, 129
HhaI GCGC 2 cut(s) 7, 70
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 241, 250
Hin6I GCGC 2 cut(s) 5, 68
HinP1I GCGC 2 cut(s) 5, 68
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 290
HpaII CCGG 5 cut(s) 41, 71, 93, 117, 129
HphI GGTGA 2 cut(s) 200, 386
Hpy166II GTNNAC 2 cut(s) 208, 426
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 5 cut(s) 247, 287, 338, 346, 435
Hpy8I GTNNAC 2 cut(s) 208, 426
HpyCH4III ACNGT 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 65, 122, 389
HpyF3I CTNAG 4 cut(s) 15, 285, 399, 408
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 241, 250
HspAI GCGC 2 cut(s) 5, 68
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 3 cut(s) 40, 70, 92
KroNI GCCGGC 3 cut(s) 42, 72, 94
Kzo9I GATC 3 cut(s) 177, 222, 342
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 2 cut(s) 108, 119
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 179, 224, 344
MbiI CCGCTC 1 cut(s) 122
MboI GATC 3 cut(s) 177, 222, 342
MflI RGATCY 3 cut(s) 177, 222, 342
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 383
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 3 cut(s) 206, 351, 394
Mox20I TGGCCA 1 cut(s) 383
MreI CGCCGGCG 1 cut(s) 70
MroNI GCCGGC 3 cut(s) 40, 70, 92
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 5 cut(s) 41, 71, 93, 117, 129
MspR9I CCNGG 2 cut(s) 298, 372
MvaI CCWGG 2 cut(s) 298, 372
MwoI GCNNNNNNNGC 4 cut(s) 11, 65, 122, 389
NaeI GCCGGC 3 cut(s) 42, 72, 94
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 237
NdeII GATC 3 cut(s) 177, 222, 342
NgoMIV GCCGGC 3 cut(s) 40, 70, 92
NlaIII CATG 2 cut(s) 241, 250
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 55, 70
NmuCI GTSAC 1 cut(s) 415
NotI GCGGCCGC 1 cut(s) 123
PagI TCATGA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 152
PdiI GCCGGC 3 cut(s) 42, 72, 94
PdmI GAANNNNTTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 298
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 296, 370
PspGI CCWGG 2 cut(s) 296, 370
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 193
PspPPI RGGWCCY 1 cut(s) 193
PsuI RGATCY 3 cut(s) 177, 222, 342
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 3 cut(s) 177, 222, 342
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 298, 372
SetI ASST 8 cut(s) 105, 173, 195, 207, 257, 282, 311, 434
SfaNI GCATC 1 cut(s) 252
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 70
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 377
SsiI CCGC 5 cut(s) 27, 59, 74, 122, 126
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 296, 370
StyI CCWWGG 4 cut(s) 9, 87, 108, 237
TaaI ACNGT 1 cut(s) 55
TasI AATT 1 cut(s) 377
TauI GCSGC 2 cut(s) 125, 128
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 247, 263
VpaK11BI GGWCC 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.