Rorug05G0357700

histone H2B.1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000578
Physical Location & Seq
Forward (+)
45320850 .. 45322393
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0357700.1

Sequence Viewer

Length: 516 bp
ATGATAAATCCCATATTTGTTAATTATGCTTACCATAGGTGGAAAGCCCGCTCACAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTTTCTCGGCCTACAGGAAGTTGATGAGTATGAGAGCTTTTACAAAGGAAATATGGAGAGCAGTGGTTATTCCAGTACCTACATTCAACTAGAAACCACTGTACAGTGCTACTCAAAACTCCATTTGAGTTGCCCAGTGTACACGAACAAAAATGAACTTTTGGAACTCATGTGGTTTTATAACTTGCAACAAGTAATTTTAGTTTTCCACCAGATTTGCTCTAACTTAGATGTCCGTTCTGACGTACAAACCATAGGTTTTGGTGGATTTGAACTGATGGATCCTTCTTGCAAGTTGGCTGAAAGCAAGACCAAAAGATTTGTTCCTGTTTTGTTCAACAATGTGATGGTCGTTAGATGGGTATCAGTCTGGCCAACTATAGTTCCTTCACTTTATTATGTCCAACCTTACAACTTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

171

Amino Acids

19.92

Weight (kDa)

6.28

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 49
AclWI GGATC 2 cut(s) 368, 381
AcoI YGGCCR 1 cut(s) 464
AfaI GTAC 4 cut(s) 169, 195, 233, 339
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 3 cut(s) 179, 365, 430
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
AlwI GGATC 2 cut(s) 368, 381
AoxI GGCC 2 cut(s) 100, 464
BalI TGGCCA 1 cut(s) 466
BamHI GGATCC 1 cut(s) 373
BccI CCATC 3 cut(s) 364, 433, 444
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 104, 471
BmiI GGNNCC 1 cut(s) 375
BmrI ACTGGG 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 165, 227
Bse8I GATNNNNATC 1 cut(s) 454
BseDI CCNNGG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 165, 227
BshFI GGCC 2 cut(s) 102, 466
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 2 cut(s) 102, 466
Bsp1407I TGTACA 2 cut(s) 193, 231
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 1 cut(s) 49
BspANI GGCC 2 cut(s) 102, 466
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 2 cut(s) 368, 381
BsrBI CCGCTC 1 cut(s) 51
BsrGI TGTACA 2 cut(s) 193, 231
BsrI ACTGG 2 cut(s) 165, 227
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 82
Bst4CI ACNGT 2 cut(s) 193, 198
BstAUI TGTACA 2 cut(s) 193, 231
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 319
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstSFI CTRYAG 2 cut(s) 104, 471
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 2 cut(s) 102, 466
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 4 cut(s) 160, 189, 203, 234
Cac8I GCNNGC 1 cut(s) 49
Csp6I GTAC 4 cut(s) 168, 194, 232, 338
CspCI CAANNNNNGTGG 2 cut(s) 290, 325
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 47, 102, 129, 392, 466
CviKI_1 RGCY 5 cut(s) 47, 102, 129, 392, 466
CviQI GTAC 4 cut(s) 168, 194, 232, 338
DdeI CTNAG 1 cut(s) 319
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 265
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 90
FspBI CTAG 1 cut(s) 182
HaeIII GGCC 2 cut(s) 102, 466
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 87
Hpy166II GTNNAC 3 cut(s) 91, 232, 234
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 3 cut(s) 91, 232, 234
HpyAV CCTTC 2 cut(s) 387, 489
HpyCH4III ACNGT 2 cut(s) 193, 198
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 280, 384
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 373
LpnPI CCDG 7 cut(s) 41, 92, 178, 240, 317, 432, 448
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 336
MalI GATC 1 cut(s) 375
MbiI CCGCTC 1 cut(s) 51
MboI GATC 1 cut(s) 373
MflI RGATCY 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 3 cut(s) 22, 60, 288
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 466
MseI TTAA 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 466
NdeII GATC 1 cut(s) 373
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 375
NmeAIII GCCGAG 1 cut(s) 78
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 375
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 4 cut(s) 169, 195, 233, 339
RsaNI GTAC 4 cut(s) 168, 194, 232, 338
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 1 cut(s) 373
SchI GAGTC 1 cut(s) 96
SetI ASST 7 cut(s) 41, 84, 131, 173, 339, 352, 502
SfcI CTRYAG 2 cut(s) 104, 471
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 22, 60, 288
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 193, 198
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 22, 60, 288
TatI WGTACW 2 cut(s) 193, 231
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 4 cut(s) 160, 196, 203, 234
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 4 cut(s) 160, 196, 203, 234
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.