FvH4_3g35180

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000578
Physical Location & Seq
Reverse (-)
30350855 .. 30351768
914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35180.t1

Sequence Viewer

Length: 549 bp
ATGTATAAAACTCACCCTCCTCTCTACAAGTCCTTCACAGTTCACACAAAGAATCCCAAGTTCCCAAATCGAATTCGCAACCCCAAATTTCAACCCTCCTTCTCTAATCCAATGGCACCCAAAGCCGAGAAGAAGCCCGCCGAGAAGAAGCCTGCCGAGAAGACCGTGGCGGAGAAAGCCCCGGCGGAGAAGAAGCCCAAGGCCGGCAAGAAGCTCCCCAAGGAGGCCGGAGCCGCCGCCGGAGACAAGAAGAAGAAGAGGAGCAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAGGTCCACCCTGACATCGGGATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAGTCGTCCAGGCTTGCAAGATACAACAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTGAGGCTTGTGCTTCCTGGTGAATTGGCCAAGCATGCCGTCTCTGAGGGGACTAAGGCTGTGACTAAGTTTACAAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

10.25

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 82 - 158 1.8e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 112 - 180 7.7e-08 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 115
AciI CCGC 5 cut(s) 138, 170, 185, 234, 237
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 2 cut(s) 72, 86
AfiI CCNNNNNNNGG 3 cut(s) 203, 223, 329
AgsI TTSAA 2 cut(s) 92, 301
AjnI CCWGG 2 cut(s) 407, 481
AluBI AGCT 4 cut(s) 214, 366, 391, 543
AluI AGCT 4 cut(s) 214, 366, 391, 543
Alw26I GTCTC 3 cut(s) 237, 272, 511
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 4 cut(s) 201, 225, 345, 492
ApoI RAATTY 2 cut(s) 72, 86
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 5, 497
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 2 cut(s) 409, 483
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 3 cut(s) 237, 272, 511
BfuAI ACCTGC 1 cut(s) 304
BglII AGATCT 1 cut(s) 288
BisI GCNGC 2 cut(s) 234, 237
BlsI GCNGC 2 cut(s) 235, 238
Bme1390I CCNGG 3 cut(s) 182, 409, 483
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 2 cut(s) 117, 232
BmrFI CCNGG 3 cut(s) 182, 409, 483
BmsI GCATC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 5 cut(s) 165, 180, 198, 219, 348
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 223, 329
Bse118I RCCGGY 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 2 cut(s) 409, 483
BseDI CCNNGG 5 cut(s) 165, 180, 198, 219, 348
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 3 cut(s) 203, 223, 329
BseMII CTCAG 2 cut(s) 410, 501
BseRI GAGGAG 2 cut(s) 9, 274
BshFI GGCC 4 cut(s) 203, 227, 347, 494
BshNI GGYRCC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 4 cut(s) 182, 204, 228, 240
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 3 cut(s) 203, 223, 329
BsmAI GTCTC 3 cut(s) 237, 272, 511
BsmBI CGTCTC 1 cut(s) 511
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 4 cut(s) 203, 227, 347, 494
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 447
Bsp143I GATC 2 cut(s) 288, 333
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 5 cut(s) 138, 170, 185, 234, 237
BspANI GGCC 4 cut(s) 203, 227, 347, 494
BspCNI CTCAG 2 cut(s) 409, 502
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 117, 232
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 5 cut(s) 165, 180, 198, 219, 348
BssMI GATC 2 cut(s) 288, 333
BssT1I CCWWGG 3 cut(s) 198, 219, 348
Bst2UI CCWGG 2 cut(s) 409, 483
Bst4CI ACNGT 2 cut(s) 40, 166
Bst6I CTCTTC 2 cut(s) 251, 263
BstC8I GCNNGC 6 cut(s) 138, 153, 205, 393, 414, 501
BstDEI CTNAG 4 cut(s) 396, 510, 519, 531
BstDSI CCRYGG 2 cut(s) 165, 348
BstKTI GATC 2 cut(s) 291, 336
BstMAI GTCTC 3 cut(s) 237, 272, 511
BstMBI GATC 2 cut(s) 288, 333
BstMWI GCNNNNNNNGC 5 cut(s) 122, 176, 233, 270, 500
BstNI CCWGG 2 cut(s) 409, 483
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 3 cut(s) 180, 407, 481
BstV2I GAAGAC 1 cut(s) 167
BstX2I RGATCY 2 cut(s) 288, 333
BstYI RGATCY 2 cut(s) 288, 333
BsuRI GGCC 4 cut(s) 203, 227, 347, 494
BtgI CCRYGG 2 cut(s) 165, 348
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 6 cut(s) 138, 153, 205, 393, 414, 501
CciI TCATGA 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 316
CviAII CATG 3 cut(s) 349, 358, 500
DdeI CTNAG 4 cut(s) 396, 510, 519, 531
DpnI GATC 2 cut(s) 290, 335
DpnII GATC 2 cut(s) 288, 333
EaeI YGGCCR 1 cut(s) 492
Eam1104I CTCTTC 2 cut(s) 251, 263
EarI CTCTTC 2 cut(s) 251, 263
EciI GGCGGA 2 cut(s) 185, 200
Eco130I CCWWGG 3 cut(s) 198, 219, 348
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 407, 481
EcoT14I CCWWGG 3 cut(s) 198, 219, 348
ErhI CCWWGG 3 cut(s) 198, 219, 348
Esp3I CGTCTC 1 cut(s) 511
FaeI CATG 3 cut(s) 352, 361, 503
FaiI YATR 4 cut(s) 6, 350, 359, 501
FaqI GGGAC 1 cut(s) 529
FatI CATG 3 cut(s) 348, 357, 499
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 234, 237
Fsp4HI GCNGC 2 cut(s) 234, 237
GluI GCNGC 2 cut(s) 234, 237
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 4 cut(s) 203, 227, 347, 494
HapII CCGG 4 cut(s) 182, 204, 228, 240
Hin1II CATG 3 cut(s) 352, 361, 503
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 52, 401, 454
HpaII CCGG 4 cut(s) 182, 204, 228, 240
HphI GGTGA 2 cut(s) 5, 497
Hpy166II GTNNAC 3 cut(s) 43, 319, 537
Hpy188I TCNGA 2 cut(s) 459, 511
Hpy188III TCNNGA 6 cut(s) 331, 358, 385, 398, 449, 546
Hpy8I GTNNAC 3 cut(s) 43, 319, 537
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 43, 109
HpyCH4III ACNGT 2 cut(s) 40, 166
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 176, 233, 270, 500
HpyF3I CTNAG 4 cut(s) 396, 510, 519, 531
Hsp92II CATG 3 cut(s) 352, 361, 503
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 288, 333
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 3 cut(s) 219, 230, 261
LweI GCATC 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 526
MalI GATC 2 cut(s) 290, 335
MboI GATC 2 cut(s) 288, 333
MflI RGATCY 2 cut(s) 288, 333
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 3 cut(s) 72, 86, 488
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 7 cut(s) 27, 30, 106, 217, 252, 462, 505
Mox20I TGGCCA 1 cut(s) 494
MroNI GCCGGC 1 cut(s) 203
MroXI GAANNNNTTC 1 cut(s) 365
MscI TGGCCA 1 cut(s) 494
Msp20I TGGCCA 1 cut(s) 494
MspI CCGG 4 cut(s) 182, 204, 228, 240
MspR9I CCNGG 3 cut(s) 182, 409, 483
MvaI CCWGG 2 cut(s) 409, 483
MwoI GCNNNNNNNGC 5 cut(s) 122, 176, 233, 270, 500
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 348
NdeII GATC 2 cut(s) 288, 333
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 3 cut(s) 352, 361, 503
NlaIV GGNNCC 2 cut(s) 117, 232
NmeAIII GCCGAG 3 cut(s) 151, 166, 181
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 1 cut(s) 503
PaeI GCATGC 1 cut(s) 503
PagI TCATGA 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PdiI GCCGGC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 52, 454
PkrI GCNGC 2 cut(s) 235, 238
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 407, 481
PspGI CCWGG 2 cut(s) 407, 481
PspN4I GGNNCC 2 cut(s) 117, 232
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 2 cut(s) 288, 333
SapI GCTCTTC 1 cut(s) 263
SatI GCNGC 2 cut(s) 234, 237
Sau3AI GATC 2 cut(s) 288, 333
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 3 cut(s) 182, 409, 483
SetI ASST 7 cut(s) 216, 284, 306, 318, 368, 393, 545
SfaNI GCATC 1 cut(s) 363
SinI GGWCC 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SphI GCATGC 1 cut(s) 503
Sse9I AATT 3 cut(s) 72, 86, 488
SsiI CCGC 5 cut(s) 138, 170, 185, 234, 237
StyD4I CCNGG 3 cut(s) 180, 407, 481
StyI CCWWGG 3 cut(s) 198, 219, 348
TaaI ACNGT 2 cut(s) 40, 166
TaqI TCGA 2 cut(s) 70, 384
TasI AATT 3 cut(s) 72, 86, 488
TauI GCSGC 2 cut(s) 236, 239
TfiI GAWTC 2 cut(s) 52, 454
TseFI GTSAC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 358, 374
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 2 cut(s) 72, 86
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.