Rorug05G0423500

histone H2B

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
58903679 .. 58906168
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0423500.1

Sequence Viewer

Length: 1074 bp
ATGCAAAAATATGTAGTGGATCTGACTCATAAGACATTTATCTTACAACAAATGGGAAGGCTATGGAGAGCTTGGAAATCTGATCTCTCGACTAACATCAAAAGAATTGTAGATACTAGATGCACTAAGTCAGAAACTACAAGGCTACTTGGCATTCTGAAGCCCTCTGATGTGCCACAAAAAGAGTGGGATGAGTTCGTGGCAGACCGTAGTTCAGAGTCATGGCAAGAAAAGAGTGAGAAAATGAAAAAAATAAGAGCAAATCAGACTTTAACACACACAATGAGCCGAAAAGGTTATGCAAGGTTGGAAGATGAATATAAAAAGGAAAATCCTGGAAAATCATTGAGTAGGGCAGAATTATGGATTAAAGGACACGAGCAGAAGAAGTCAAAAAATGAGCATGTGGCTGCCAAAATTATTGAAATACAAGCTAAACTTGATGCGCAACCACCTAGTGAAGGGCGTATTCCGATAAAATATGATACACTAAGTCAGGTTCTTGGTAAGGAGCGTCCTGGCCGTGTTAGAGGTTTGGGATCAGGGGTTACACCTTCAAAGGTAGATGCTCAACTAGAAAGTAGCTCATGGAAACAAACATTAGAGAATAAAATTGATGCAATGAGTGAGCGCACAAAGATTCTGGAGGATATAATTTTAAAGATGAGCCAAAATGGGAATGGTGGTGGTGGTGGTGATGGTGAAAATATGCATGCTGATTCTGTTGGTACTCCACAAAATGGGCATGGACATGGTGAAGGAAGTATGAACCTTGGTACTGGAAATTCTAAGTCAGAACAAGATAGCACCCAACTTTCTATTAACGATAAGTGCAAGTTGCTAAACTGGGAGGGCACAAGTGAAGTAGTGGCTAGAGGATACATTTCTGATATTAACCCTGAATCAAAAGTGCATGGCTACAAACTTGGACCTGACTGTTATAGAATTGCTATTGAGGAAGTTGTCATGTCTGATGCTGAATTTTATCGAAGTCAGCCGGAATTTGTGACTATGGAAGATGCACTTGGAAGTACTGTTGCTTGGCCGATTAAGTACATTGTCTGTGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

357

Amino Acids

40.02

Weight (kDa)

7.66

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 61 - 185 1.1e-18 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 272 - 354 1.2e-11 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 447
AccB7I CCANNNNNTGG 1 cut(s) 740
AclWI GGATC 2 cut(s) 27, 547
AcoI YGGCCR 2 cut(s) 520, 1043
AcsI RAATTY 3 cut(s) 784, 980, 1001
AcuI CTGAAG 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 4 cut(s) 730, 778, 1033, 1055
AfiI CCNNNNNNNGG 2 cut(s) 461, 740
AgsI TTSAA 2 cut(s) 425, 558
AjnI CCWGG 2 cut(s) 334, 517
AjuI GAANNNNNNNTTGG 2 cut(s) 1008, 1040
AluBI AGCT 3 cut(s) 71, 434, 585
AluI AGCT 3 cut(s) 71, 434, 585
AlwI GGATC 2 cut(s) 27, 547
AoxI GGCC 2 cut(s) 520, 1043
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 3 cut(s) 784, 980, 1001
AspLEI GCGC 2 cut(s) 448, 633
AspS9I GGNCC 1 cut(s) 929
AsuHPI GGTGA 3 cut(s) 707, 713, 767
AvaII GGWCC 1 cut(s) 929
BaeGI GKGCMC 1 cut(s) 857
BauI CACGAG 1 cut(s) 377
BbvI GCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 692
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 336, 519
BciVI GTATCC 1 cut(s) 872
BfaI CTAG 4 cut(s) 117, 456, 575, 873
BfuI GTATCC 1 cut(s) 872
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmcAI AGTACT 1 cut(s) 1033
Bme1390I CCNGG 2 cut(s) 336, 519
Bme18I GGWCC 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 929
BmrFI CCNGG 2 cut(s) 336, 519
BmrI ACTGGG 1 cut(s) 856
BmsI GCATC 6 cut(s) 110, 433, 556, 607, 964, 1009
BmuI ACTGGG 1 cut(s) 856
BpmI CTGGAG 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 772
Bsc4I CCNNNNNNNGG 2 cut(s) 461, 740
Bse1I ACTGG 2 cut(s) 784, 851
Bse3DI GCAATG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 336, 519
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 461, 740
BseMI GCAATG 1 cut(s) 627
BseNI ACTGG 2 cut(s) 784, 851
BseSI GKGCMC 1 cut(s) 857
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 2 cut(s) 522, 1045
BsiSI CCGG 1 cut(s) 998
BslI CCNNNNNNNGG 2 cut(s) 461, 740
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 2 cut(s) 522, 1045
Bsp1286I GDGCHC 1 cut(s) 857
Bsp143I GATC 3 cut(s) 19, 82, 539
BspANI GGCC 2 cut(s) 522, 1045
BspPI GGATC 2 cut(s) 27, 547
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 2 cut(s) 784, 851
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 3 cut(s) 19, 82, 539
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 772
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 336, 519
Bst4CI ACNGT 3 cut(s) 209, 938, 1036
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 3 cut(s) 126, 491, 789
BstENI CCTNNNNNAGG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 196
BstHHI GCGC 2 cut(s) 448, 633
BstKTI GATC 3 cut(s) 22, 85, 542
BstMBI GATC 3 cut(s) 19, 82, 539
BstNI CCWGG 2 cut(s) 336, 519
BstNSI RCATGY 2 cut(s) 407, 716
BstSCI CCNGG 2 cut(s) 334, 517
BstSLI GKGCMC 1 cut(s) 857
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 2 cut(s) 522, 1045
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 714
CfoI GCGC 2 cut(s) 448, 633
Cfr13I GGNCC 1 cut(s) 929
CseI GACGC 1 cut(s) 503
Csp6I GTAC 4 cut(s) 729, 777, 1032, 1054
CspCI CAANNNNNGTGG 2 cut(s) 167, 202
CviAII CATG 8 cut(s) 222, 404, 588, 713, 746, 752, 914, 967
CviQI GTAC 4 cut(s) 729, 777, 1032, 1054
DdeI CTNAG 3 cut(s) 126, 491, 789
DpnI GATC 3 cut(s) 21, 84, 541
DpnII GATC 3 cut(s) 19, 82, 539
DraI TTTAAA 1 cut(s) 660
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 2 cut(s) 520, 1043
Eco130I CCWWGG 1 cut(s) 772
Eco47I GGWCC 1 cut(s) 929
Eco57I CTGAAG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 459
EcoRII CCWGG 2 cut(s) 334, 517
EcoT14I CCWWGG 1 cut(s) 772
EcoT22I ATGCAT 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 8 cut(s) 225, 407, 591, 716, 749, 755, 917, 970
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 1008, 1040
FatI CATG 8 cut(s) 221, 403, 587, 712, 745, 751, 913, 966
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 4 cut(s) 117, 456, 575, 873
FspI TGCGCA 1 cut(s) 447
GlaI GCGC 2 cut(s) 447, 632
GluI GCNGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 665
HaeIII GGCC 2 cut(s) 522, 1045
HapII CCGG 1 cut(s) 998
HgaI GACGC 1 cut(s) 503
HhaI GCGC 2 cut(s) 448, 633
Hin1II CATG 8 cut(s) 225, 407, 591, 716, 749, 755, 917, 970
Hin6I GCGC 2 cut(s) 446, 631
HinP1I GCGC 2 cut(s) 446, 631
HinfI GANTC 5 cut(s) 25, 218, 640, 719, 902
HpaII CCGG 1 cut(s) 998
HphI GGTGA 3 cut(s) 707, 713, 767
Hpy188III TCNNGA 2 cut(s) 88, 644
HpyAV CCTTC 4 cut(s) 51, 455, 564, 752
HpyCH4III ACNGT 3 cut(s) 209, 938, 1036
HpyCH4V TGCA 8 cut(s) 4, 123, 302, 620, 712, 834, 913, 1022
HpyF3I CTNAG 3 cut(s) 126, 491, 789
Hsp92II CATG 8 cut(s) 225, 407, 591, 716, 749, 755, 917, 970
HspAI GCGC 2 cut(s) 446, 631
Kzo9I GATC 3 cut(s) 19, 82, 539
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 6 cut(s) 110, 433, 556, 607, 964, 1009
MaeI CTAG 4 cut(s) 117, 456, 575, 873
MaeIII GTNAC 3 cut(s) 547, 1006, 1064
MalI GATC 3 cut(s) 21, 84, 541
MboI GATC 3 cut(s) 19, 82, 539
MboII GAAGA 3 cut(s) 323, 397, 1028
MfeI CAATTG 1 cut(s) 1069
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 857
MlyI GAGTC 2 cut(s) 19, 227
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 6 cut(s) 175, 524, 640, 844, 869, 949
Mph1103I ATGCAT 1 cut(s) 714
MseI TTAA 6 cut(s) 272, 369, 659, 822, 894, 1050
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 1 cut(s) 998
MspR9I CCNGG 2 cut(s) 336, 519
MunI CAATTG 1 cut(s) 1069
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 2 cut(s) 336, 519
NdeII GATC 3 cut(s) 19, 82, 539
NlaIII CATG 8 cut(s) 225, 407, 591, 716, 749, 755, 917, 970
NmuCI GTSAC 2 cut(s) 1006, 1064
NsbI TGCGCA 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 714
NspI RCATGY 2 cut(s) 407, 716
PaeI GCATGC 1 cut(s) 716
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 640, 719, 902
PflMI CCANNNNNTGG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 2 cut(s) 19, 226
PpsI GAGTC 2 cut(s) 19, 226
Psp6I CCWGG 2 cut(s) 334, 517
PspGI CCWGG 2 cut(s) 334, 517
PspPI GGNCC 1 cut(s) 929
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 4 cut(s) 730, 778, 1033, 1055
RsaNI GTAC 4 cut(s) 729, 777, 1032, 1054
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 6 cut(s) 272, 369, 659, 822, 894, 1050
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 3 cut(s) 19, 82, 539
Sau96I GGNCC 1 cut(s) 929
ScaI AGTACT 1 cut(s) 1033
SchI GAGTC 2 cut(s) 19, 227
ScrFI CCNGG 2 cut(s) 336, 519
SduI GDGCHC 1 cut(s) 857
SfaNI GCATC 6 cut(s) 110, 433, 556, 607, 964, 1009
SinI GGWCC 1 cut(s) 929
SmiMI CAYNNNNRTG 1 cut(s) 750
SphI GCATGC 1 cut(s) 716
SspMI CTAG 4 cut(s) 117, 456, 575, 873
StyD4I CCNGG 2 cut(s) 334, 517
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 3 cut(s) 209, 938, 1036
TaqI TCGA 2 cut(s) 89, 988
TatI WGTACW 2 cut(s) 1031, 1053
TfiI GAWTC 3 cut(s) 640, 719, 902
Tru1I TTAA 6 cut(s) 272, 369, 659, 822, 894, 1050
Tru9I TTAA 6 cut(s) 272, 369, 659, 822, 894, 1050
TseFI GTSAC 2 cut(s) 1006, 1064
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 2 cut(s) 1006, 1064
TspDTI ATGAA 3 cut(s) 260, 330, 782
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 929
XagI CCTNNNNNAGG 1 cut(s) 459
XapI RAATTY 3 cut(s) 784, 980, 1001
XceI RCATGY 2 cut(s) 407, 716
XcmI CCANNNNNNNNNTGG 2 cut(s) 183, 677
XspI CTAG 4 cut(s) 117, 456, 575, 873
ZrmI AGTACT 1 cut(s) 1033
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.