Rorug05G0354400

histone H2B.1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000578
Physical Location & Seq
Forward (+)
44277402 .. 44277746
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0354400.1

Sequence Viewer

Length: 243 bp
ATGGTCTTGAAGATGTCCATCACAGAGTCGTTAAAGAAATTAGTGTCGTGTGTTATCCTTGATTTGAATGGTACACTACTACACACAGATGGCATAGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAGAATGGAAAGAAATGGGATGGGAGGGAAGTTCAAACGATAGTTGGAAAAACACCACTCGAAGCTGCAACTGCTGTTGTGGAGGAATATGGGCTATCTTGCACAACGAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

80

Amino Acids

8.67

Weight (kDa)

5.77

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 3 cut(s) 10, 67, 161
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 26, 83, 140
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 17
Bse8I GATNNNNATC 1 cut(s) 17
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 17
BseXI GCAGC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 151
Csp6I GTAC 1 cut(s) 72
CviJI RGCY 2 cut(s) 191, 220
CviKI_1 RGCY 2 cut(s) 191, 220
CviQI GTAC 1 cut(s) 72
FaiI YATR 2 cut(s) 95, 216
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 194, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 178
MboII GAAGA 1 cut(s) 22
MluCI AATT 1 cut(s) 38
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 2 cut(s) 144, 202
MseI TTAA 2 cut(s) 32, 110
MslI CAYNNNNRTG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 32, 110
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 35
SetI ASST 1 cut(s) 193
SgeI CNNG 6 cut(s) 19, 60, 71, 139, 197, 237
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 38
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 38
Tru1I TTAA 2 cut(s) 32, 110
Tru9I TTAA 2 cut(s) 32, 110
TseI GCWGC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.