AT5G59910

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000578
Physical Location & Seq
Forward (+)
24126877 .. 24128162
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59910.1

Sequence Viewer

Length: 453 bp
ATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCAGCTTCCGAGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGAAGCTCCCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAGATGAAGAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTTGCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGAGATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCCGTTTCTGAGGGGACTAAAGCCGTCACGAAATTCACCAGCTCTTGA

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

10.0

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 50 - 126 1.6e-21 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 80 - 149 1.4e-07 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000578)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45980 AT3G46030 AT5G59910
fragaria_vesca FvH4_3g35121 FvH4_3g35121 FvH4_3g35121 FvH4_3g35180 FvH4_3g35380 FvH4_3g35390 FvH4_3g35440 FvH4_3g40690
malus_domestica MD07G1116500.v1.1 MD11G1112800.v1.1 MD11G1144100.v1.1
prunus_persica Prupe.6G082000_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G082700_v2.0.a1 Prupe.6G083500_v2.0.a1
pyrus_communis pycom03g08040 pycom11g09350
rosa_chinensis RchiOBHm_Chr5g0063141 RchiOBHm_Chr5g0063151 RchiOBHm_Chr5g0063491 RchiOBHm_Chr5g0063501 RchiOBHm_Chr5g0063561 RchiOBHm_Chr5g0073451
rosa_laevigata RLG00000035607 RLG00000035610 RLG00000035611 RLG00000035640 RLG00000035650 RLG00000035655
rosa_multiflora Rmu_sc0005045.1_g000027 Rmu_sc0005045.1_g000029 Rmu_sc0005045.1_g000036 Rmu_sc0016394.1_g000001 Rmu_sc0021593.1_g000004 Rmu_ssc0000309.1_g000057 Rmu_ssc0000309.1_g000058
rosa_roxburghii Rroxscaffold_1G00007800 Rroxscaffold_1G00017210 Rroxscaffold_1G00017490 Rroxscaffold_1G00017500
rosa_rugosa Rorug05G0354400 Rorug05G0354600 Rorug05G0354700 Rorug05G0357700 Rorug05G0357800 Rorug05G0358300 Rorug05G0423500
rosa_samantha Rh5AG415000 Rh5AG416900 Rh5AG480900 Rh5BG429700 Rh5BG430000 Rh5BG432000 Rh5BG432200 Rh5BG432500 Rh5BG501700 Rh5CG453200 Rh5CG453500 Rh5CG455300 Rh5CG455600 Rh5CG455700 Rh5CG524800 Rh5DG443200 Rh5DG443400 Rh5DG443500 Rh5DG445400 Rh5DG445600 Rh5DG445900 Rh5DG514000
rosa_wichuraiana Rw5G038990 Rw5G039010 Rw5G039160 Rw5G039180 Rw5G044680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 137
AciI CCGC 2 cut(s) 27, 92
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 437
AcyI GRCGYC 2 cut(s) 5, 308
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 110, 233
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 7 cut(s) 44, 86, 121, 134, 295, 316, 447
AluI AGCT 7 cut(s) 44, 86, 121, 134, 295, 316, 447
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 351
BanI GGYRCC 2 cut(s) 4, 137
BccI CCATC 1 cut(s) 247
BceAI ACGGC 2 cut(s) 392, 413
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 6, 139
BmrFI CCNGG 1 cut(s) 387
BpmI CTGGAG 2 cut(s) 226, 408
BpuEI CTTGAG 1 cut(s) 285
BsaBI GATNNNNATC 2 cut(s) 197, 257
BsaHI GRCGYC 2 cut(s) 5, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 233
Bse118I RCCGGY 1 cut(s) 55
Bse8I GATNNNNATC 2 cut(s) 197, 257
BseBI CCWGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 2 cut(s) 197, 257
BseLI CCNNNNNNNGG 2 cut(s) 110, 233
BseMII CTCAG 2 cut(s) 21, 405
BseRI GAGGAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 2 cut(s) 4, 137
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 4 cut(s) 56, 89, 111, 141
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 110, 233
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 351
Bsp143I GATC 3 cut(s) 192, 258, 342
BspACI CCGC 2 cut(s) 27, 92
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 2 cut(s) 22, 406
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 6, 139
BspPI GGATC 1 cut(s) 266
BspT107I GGYRCC 2 cut(s) 4, 137
BspTI CTTAAG 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 3 cut(s) 192, 258, 342
BssNI GRCGYC 2 cut(s) 5, 308
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 2 cut(s) 5, 308
BstAFI CTTAAG 1 cut(s) 212
BstC8I GCNNGC 4 cut(s) 27, 297, 318, 405
BstDEI CTNAG 2 cut(s) 30, 414
BstF5I GGATG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 195, 261, 345
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 192, 258, 342
BstMWI GCNNNNNNNGC 4 cut(s) 11, 83, 305, 404
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 4 cut(s) 27, 297, 318, 405
CciI TCATGA 1 cut(s) 261
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 262, 404
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 30, 414
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 194, 260, 344
DpnII GATC 3 cut(s) 192, 258, 342
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 107
Eco32I GATATC 2 cut(s) 232, 283
Eco88I CYCGRG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 385
EcoRV GATATC 2 cut(s) 232, 283
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 265, 407
FaiI YATR 2 cut(s) 263, 405
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 261, 403
FauI CCCGC 1 cut(s) 34
FokI GGATG 1 cut(s) 210
GlaI GCGC 1 cut(s) 6
GsuI CTGGAG 2 cut(s) 226, 408
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 110
HapII CCGG 4 cut(s) 56, 89, 111, 141
HgaI GACGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 308
Hin1II CATG 2 cut(s) 265, 407
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 2 cut(s) 293, 314
HinfI GANTC 2 cut(s) 237, 358
HpaII CCGG 4 cut(s) 56, 89, 111, 141
HphI GGTGA 1 cut(s) 433
Hpy188I TCNGA 4 cut(s) 49, 236, 363, 415
Hpy188III TCNNGA 9 cut(s) 124, 181, 227, 262, 289, 302, 353, 433, 450
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 83, 305, 404
HpyF3I CTNAG 2 cut(s) 30, 414
Hsp92I GRCGYC 2 cut(s) 5, 308
Hsp92II CATG 2 cut(s) 265, 407
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 192, 258, 342
LmnI GCTCC 2 cut(s) 91, 126
LpnPI CCDG 9 cut(s) 54, 69, 102, 120, 124, 154, 256, 372, 399
MaeIII GTNAC 1 cut(s) 430
MalI GATC 3 cut(s) 194, 260, 344
MboI GATC 3 cut(s) 192, 258, 342
MboII GAAGA 9 cut(s) 31, 46, 109, 166, 178, 181, 184, 193, 277
MflI RGATCY 1 cut(s) 192
MluCI AATT 1 cut(s) 437
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 5 cut(s) 55, 137, 298, 315, 409
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 2 cut(s) 213, 276
MspA1I CMGCKG 1 cut(s) 29
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 4 cut(s) 56, 89, 111, 141
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 4 cut(s) 11, 83, 305, 404
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 192, 258, 342
NlaIII CATG 2 cut(s) 265, 407
NlaIV GGNNCC 2 cut(s) 6, 139
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 430
NspI RCATGY 1 cut(s) 407
PaeI GCATGC 1 cut(s) 407
PagI TCATGA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 317
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 237, 358
PfoI TCCNGGA 1 cut(s) 385
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 2 cut(s) 6, 139
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 2 cut(s) 213, 276
Sau3AI GATC 3 cut(s) 192, 258, 342
ScrFI CCNGG 1 cut(s) 387
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 2 cut(s) 212, 300
SmoI CTYRAG 2 cut(s) 212, 300
SphI GCATGC 1 cut(s) 407
Sse9I AATT 1 cut(s) 437
SsiI CCGC 2 cut(s) 27, 92
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 180, 288, 311
TasI AATT 1 cut(s) 437
TfiI GAWTC 2 cut(s) 237, 358
Tru1I TTAA 2 cut(s) 213, 276
Tru9I TTAA 2 cut(s) 213, 276
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 179, 212, 262, 278
Vha464I CTTAAG 1 cut(s) 212
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.